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Aliases for SPATA42 Gene

Subcategory (RNA class) for SPATA42 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA42 Gene

  • Spermatogenesis Associated 42 (Non-Protein Coding) 2 3 5
  • Spermatogenesis-Related Gene 7 2 3
  • AKNAD1 Antisense RNA 1 2 3
  • Spermatogenesis-Related Protein 7 3
  • AKNAD1-AS1 3
  • SRG7 3

External Ids for SPATA42 Gene

Previous GeneCards Identifiers for SPATA42 Gene

  • GC01P109402

Summaries for SPATA42 Gene

GeneCards Summary for SPATA42 Gene

SPATA42 (Spermatogenesis Associated 42 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA42 Gene

Genomics for SPATA42 Gene

Regulatory Elements for SPATA42 Gene

Enhancers for SPATA42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G108827 1.6 Ensembl ENCODE dbSUPER 12.7 -27.0 -27000 4.8 HDGF PKNOX1 FOXA2 SIN3A ZNF2 YY1 CBX5 ZNF143 FOS DEK GPSM2 AKNAD1 SPATA42 WDR47 HENMT1 LOC105378891 GC01P108791
GH01G108813 1.2 ENCODE dbSUPER 11.4 -41.4 -41419 4.9 PKNOX1 ATF1 FEZF1 YY1 GLIS2 FOS ZHX2 REST ZNF592 ZNF579 AKNAD1 SPATA42 ENSG00000232971 TMEM167B STXBP3 LOC105378891 GC01P108791
GH01G108896 0.9 Ensembl 12.3 +39.3 39284 0.2 HDAC1 ATF1 FOXA2 RARA ZNF335 ZNF366 FOS JUNB ZNF592 MEF2D SPATA42 AKNAD1 GPSM2 GC01P108959
GH01G108913 0.9 ENCODE 11.1 +56.1 56117 0.2 HDAC1 PKNOX1 ATF1 TBL1XR1 ARNT CHAMP1 TCF12 GATA2 ZNF263 ZNF592 AKNAD1 SPATA42 WDR47 RANP5 GPSM2 GC01P108959
GH01G108851 1 Ensembl ENCODE 9.8 -4.9 -4949 1.9 HDGF BCOR ATF1 ZMYM3 CEBPG ZNF384 FOSL1 ZNF121 NR2F6 NFE2 SPATA42 CLCC1 GPSM2 GC01M108838
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA42 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA42 Gene

Chromosome:
1
Start:
108,857,217 bp from pter
End:
108,858,524 bp from pter
Size:
1,308 bases
Orientation:
Plus strand

Genomic View for SPATA42 Gene

Genes around SPATA42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA42 Gene

Proteins for SPATA42 Gene

Post-translational modifications for SPATA42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA42 Gene

Domains & Families for SPATA42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA42 Gene

Function for SPATA42 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA42 Gene

Localization for SPATA42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA42 Gene

Pathways & Interactions for SPATA42 Gene

SuperPathways for SPATA42 Gene

No Data Available

Interacting Proteins for SPATA42 Gene

Gene Ontology (GO) - Biological Process for SPATA42 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA42 Gene

Drugs & Compounds for SPATA42 Gene

No Compound Related Data Available

Transcripts for SPATA42 Gene

mRNA/cDNA for SPATA42 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA42 Gene

No ASD Table

Relevant External Links for SPATA42 Gene

GeneLoc Exon Structure for
SPATA42
ECgene alternative splicing isoforms for
SPATA42

Expression for SPATA42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA42 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA42 Gene

This gene is overexpressed in Testis (x51.7).

NURSA nuclear receptor signaling pathways regulating expression of SPATA42 Gene:

SPATA42
genes like me logo Genes that share expression patterns with SPATA42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA42 Gene

Orthologs for SPATA42 Gene

Evolution for SPATA42 Gene

ENSEMBL:
Gene Tree for SPATA42 (if available)
TreeFam:
Gene Tree for SPATA42 (if available)

No data available for Orthologs for SPATA42 Gene

Paralogs for SPATA42 Gene

No data available for Paralogs for SPATA42 Gene

Variants for SPATA42 Gene

Sequence variations from dbSNP and Humsavar for SPATA42 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000058441 -- 108,858,370(+) TCTTT(A/C)TCTCC intron-variant, upstream-variant-2KB
rs1000661282 -- 108,856,828(+) GAACA(C/T)TCTCA intron-variant, upstream-variant-2KB
rs1001573326 -- 108,855,866(+) AAAAA(A/G)AAACA intron-variant, upstream-variant-2KB
rs1001604365 -- 108,856,089(+) CACAA(-/G)TAATC intron-variant, upstream-variant-2KB
rs1001659904 -- 108,855,366(+) CAAGA(A/T)CGCGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPATA42 Gene

Variant ID Type Subtype PubMed ID
esv3587139 CNV gain 21293372
esv3587140 CNV gain 21293372
nsv1013192 CNV gain 25217958

Relevant External Links for SPATA42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA42

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA42 Gene

Disorders for SPATA42 Gene

Relevant External Links for SPATA42

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA42

No disorders were found for SPATA42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA42 Gene

Publications for SPATA42 Gene

No publications were found for SPATA42 Gene.

Products for SPATA42 Gene

Sources for SPATA42 Gene

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