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Aliases for SPATA42 Gene

Subcategory (RNA class) for SPATA42 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPATA42 Gene

  • Spermatogenesis Associated 42 (Non-Protein Coding) 2 3 5
  • Spermatogenesis-Related Gene 7 2 3
  • AKNAD1 Antisense RNA 1 2 3
  • Spermatogenesis-Related Protein 7 3
  • AKNAD1-AS1 3
  • SRG7 3

External Ids for SPATA42 Gene

Previous GeneCards Identifiers for SPATA42 Gene

  • GC01P109402

Summaries for SPATA42 Gene

GeneCards Summary for SPATA42 Gene

SPATA42 (Spermatogenesis Associated 42 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA42 Gene

Genomics for SPATA42 Gene

Regulatory Elements for SPATA42 Gene

Enhancers for SPATA42 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F108857 0.7 ENCODE 13.2 +1.5 1511 1.6 SPATA42 AKNAD1 GPSM2
GH01F108862 0.2 Ensembl 12.8 +5.9 5884 0.6 ZNF362 MTA2 NR4A1 PTRF PTTG1 ZNF316 IKZF1 ID3 MAFK EMSY SPATA42 AKNAD1 GPSM2
GH01F108827 0.9 Ensembl ENCODE 12.7 -27.0 -27000 4.8 PKNOX1 SIN3A ZNF2 YY1 CBX5 FOS ZNF263 SP5 JUNB REST GPSM2 AKNAD1 SPATA42 WDR47 HENMT1 LOC105378891 GC01P108791
GH01F108889 0.9 Ensembl 12.5 +32.5 32484 1.4 GATAD2A ZNF263 ELF3 SAP130 GABPA ZNF316 IKZF1 ZNF584 KDM1A NR2C2 AKNAD1 SPATA42 PRPF38B GPSM2 GC01P108959
GH01F108896 0.6 Ensembl 12.3 +39.3 39285 0.6 HDAC1 ATF1 RARA ZNF335 ZNF366 FOS JUNB ZFP41 MEF2D ZNF589 AKNAD1 SPATA42 GPSM2 GC01P108959
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPATA42 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA42 Gene

108,857,217 bp from pter
108,858,524 bp from pter
1,308 bases
Plus strand

Genomic View for SPATA42 Gene

Genes around SPATA42 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA42 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA42 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA42 Gene

Proteins for SPATA42 Gene

Post-translational modifications for SPATA42 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA42 Gene

Domains & Families for SPATA42 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA42 Gene

Function for SPATA42 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA42 Gene

Localization for SPATA42 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA42 Gene

Pathways & Interactions for SPATA42 Gene

SuperPathways for SPATA42 Gene

No Data Available

Interacting Proteins for SPATA42 Gene

Gene Ontology (GO) - Biological Process for SPATA42 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPATA42 Gene

Transcripts for SPATA42 Gene

mRNA/cDNA for SPATA42 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA42 Gene

No ASD Table

Relevant External Links for SPATA42 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPATA42 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA42 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA42 Gene

This gene is overexpressed in Testis (x51.7).

NURSA nuclear receptor signaling pathways regulating expression of SPATA42 Gene:

genes like me logo Genes that share expression patterns with SPATA42: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA42 Gene

Orthologs for SPATA42 Gene

Evolution for SPATA42 Gene

Gene Tree for SPATA42 (if available)
Gene Tree for SPATA42 (if available)

No data available for Orthologs for SPATA42 Gene

Paralogs for SPATA42 Gene

No data available for Paralogs for SPATA42 Gene

Variants for SPATA42 Gene

Sequence variations from dbSNP and Humsavar for SPATA42 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs11102563 -- 108,859,002(+) ATTGA(C/T)GTAGC intron-variant, upstream-variant-2KB
rs111827354 -- 108,857,829(+) GTCAC(A/G)GTAAG intron-variant, upstream-variant-2KB
rs112268443 -- 108,856,333(+) TTTGT(C/T)GGCCA intron-variant, upstream-variant-2KB
rs116203555 -- 108,858,812(+) TGATG(A/C)CCAGC intron-variant, upstream-variant-2KB
rs12036331 -- 108,856,085(+) TGAGC(A/T)CAAGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPATA42 Gene

Variant ID Type Subtype PubMed ID
esv3587139 CNV gain 21293372
esv3587140 CNV gain 21293372
nsv1013192 CNV gain 25217958

Relevant External Links for SPATA42 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA42 Gene

Disorders for SPATA42 Gene

Relevant External Links for SPATA42

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SPATA42 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA42 Gene

Publications for SPATA42 Gene

No publications were found for SPATA42 Gene.

Products for SPATA42 Gene

Sources for SPATA42 Gene

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