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Aliases for SPATA41 Gene

Subcategory (RNA class) for SPATA41 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SPATA41 Gene

  • Spermatogenesis Associated 41 (Non-Protein Coding) 2 3
  • HSD47 3

External Ids for SPATA41 Gene

ORGUL Members for SPATA41 Gene

Summaries for SPATA41 Gene

GeneCards Summary for SPATA41 Gene

SPATA41 (Spermatogenesis Associated 41 (Non-Protein Coding)) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA41 Gene

Genomics for SPATA41 Gene

Genomic Location for SPATA41 Gene

Start:
100,344,457 bp from pter
End:
100,350,718 bp from pter
Size:
6,262 bases
Orientation:
Minus strand

Genomic View for SPATA41 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA41 Gene

No data available for Regulatory Elements for SPATA41 Gene

Proteins for SPATA41 Gene

Post-translational modifications for SPATA41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA41 Gene

Domains for SPATA41 Gene

Gene Families for SPATA41 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPATA41: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA41 Gene

Function for SPATA41 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA41 Gene

Localization for SPATA41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA41 Gene

Pathways for SPATA41 Gene

SuperPathways for SPATA41 Gene

No Data Available

Interacting Proteins for SPATA41 Gene

Gene Ontology (GO) - Biological Process for SPATA41 Gene

None

No data available for Pathways by source for SPATA41 Gene

Transcripts for SPATA41 Gene

mRNA/cDNA for SPATA41 Gene

(1) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA41 Gene

No ASD Table

Relevant External Links for SPATA41 Gene

GeneLoc Exon Structure for
SPATA41
ECgene alternative splicing isoforms for
SPATA41

Expression for SPATA41 Gene

mRNA expression in normal human tissues for SPATA41 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA41 Gene

This gene is overexpressed in Testis (5.7) and Liver (5.5).
genes like me logo Genes that share expressions with SPATA41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SPATA41 Gene

Orthologs for SPATA41 Gene

Evolution for SPATA41 Gene

ENSEMBL:
Gene Tree for SPATA41 (if available)
TreeFam:
Gene Tree for SPATA41 (if available)

No data available for Orthologs for SPATA41 Gene

Paralogs for SPATA41 Gene

No data available for Paralogs for SPATA41 Gene

Variants for SPATA41 Gene

Sequence variations from dbSNP and Humsavar for SPATA41 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1442821 -- 100,346,620(+) TTAAA(A/G)AGGCT intron-variant
rs2289584 -- 100,349,291(+) CTCGA(G/T)TCTGA nc-transcript-variant, intron-variant
rs2289585 -- 100,349,985(+) AGTGA(A/C)TCTTG nc-transcript-variant
rs2411364 -- 100,345,120(+) CATGA(A/G/T)TCTGA nc-transcript-variant
rs2411365 -- 100,345,122(+) TGAGT(A/C)TGAAT nc-transcript-variant

Relevant External Links for SPATA41 Gene

HapMap Linkage Disequilibrium report
SPATA41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA41 Gene

Disorders for SPATA41 Gene

No disorders were found for SPATA41 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA41 Gene

Publications for SPATA41 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SPATA41 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA41
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA41
    • Block miRNA regulation of SPATA41 using miScript Target Protectors

    Sources for SPATA41 Gene

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