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Aliases for SPATA41 Gene

Subcategory (RNA class) for SPATA41 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPATA41 Gene

  • Spermatogenesis Associated 41 (Non-Protein Coding) 2 3 5
  • HSD47 3

External Ids for SPATA41 Gene

Previous GeneCards Identifiers for SPATA41 Gene

  • GC15M100886

Summaries for SPATA41 Gene

GeneCards Summary for SPATA41 Gene

SPATA41 (Spermatogenesis Associated 41 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA41 Gene

Genomics for SPATA41 Gene

Regulatory Elements for SPATA41 Gene

Enhancers for SPATA41 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F100720 1.7 FANTOM5 Ensembl ENCODE 6.8 -373.8 -373772 8.6 HDGF PKNOX1 ARID4B SIN3A FEZF1 BRCA1 FOS DEK TSHZ1 TBX21 TM2D3 SPATA41 ALDH1A3 LOC105371024 GC15M100739
GH15F100349 1 ENCODE 8.4 +0.5 542 2.0 PKNOX1 ATF1 ARID4B SIN3A YY1 ELK1 ZNF143 FOS NFYC ZHX2 SPATA41 CERS3-AS1 ADAMTS17 LOC105371021
GH15F100307 0.7 ENCODE 6.2 +42.2 42240 1.7 CTCF SIN3A FEZF1 ZIC2 CTBP1 MAZ RFX1 L3MBTL2 BHLHE40 KLF4 ADAMTS17 SPATA41 PIR51596 PIR40167
GH15F100309 0.7 ENCODE 5.7 +39.4 39438 3.1 GTF2F1 TAF1 SIN3A GATA3 POLR2A ZNF687 RFX1 L3MBTL2 HLF NRF1 SPATA41 PIR51596 PIR40167
GH15F100525 0.5 ENCODE 7.7 -175.3 -175341 0.8 CTCF POLR2A RAD21 YY1 SPATA41 CERS3-AS1 CERS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA41 on UCSC Golden Path with GeneCards custom track

Promoters for SPATA41 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SPATA41 Gene

100,344,457 bp from pter
100,350,718 bp from pter
6,262 bases
Minus strand

Genomic View for SPATA41 Gene

Genes around SPATA41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA41 Gene

Proteins for SPATA41 Gene

Post-translational modifications for SPATA41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA41 Gene

Domains & Families for SPATA41 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA41 Gene

Function for SPATA41 Gene

genes like me logo Genes that share phenotypes with SPATA41: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA41 Gene

Localization for SPATA41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA41 Gene

Pathways & Interactions for SPATA41 Gene

SuperPathways for SPATA41 Gene

No Data Available

Interacting Proteins for SPATA41 Gene

Gene Ontology (GO) - Biological Process for SPATA41 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPATA41 Gene

Transcripts for SPATA41 Gene

mRNA/cDNA for SPATA41 Gene

(1) REFSEQ mRNAs :
(5) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA41 Gene

No ASD Table

Relevant External Links for SPATA41 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPATA41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA41 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA41 Gene

This gene is overexpressed in Testis (x5.7) and Liver (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of SPATA41 Gene:

genes like me logo Genes that share expression patterns with SPATA41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA41 Gene

Orthologs for SPATA41 Gene

Evolution for SPATA41 Gene

Gene Tree for SPATA41 (if available)
Gene Tree for SPATA41 (if available)

No data available for Orthologs for SPATA41 Gene

Paralogs for SPATA41 Gene

No data available for Paralogs for SPATA41 Gene

Variants for SPATA41 Gene

Sequence variations from dbSNP and Humsavar for SPATA41 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs111373466 -- 100,348,251(+) AGAAA(C/T)GAAAA intron-variant, upstream-variant-2KB
rs111662444 -- 100,349,642(+) CTATA(A/G)GTGGA intron-variant, nc-transcript-variant
rs111836087 -- 100,344,373(+) CACCG(-/A)AAAAA intron-variant, upstream-variant-2KB
rs113955744 -- 100,349,718(+) ACCAC(-/A)AGCCT intron-variant, nc-transcript-variant
rs114021718 -- 100,346,255(+) CTGGA(G/T)CCAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA41 Gene

Variant ID Type Subtype PubMed ID
esv3637473 CNV gain 21293372
esv3637474 CNV gain 21293372
esv3892745 CNV gain 25118596
nsv1045838 CNV gain 25217958
nsv457284 CNV gain 19166990
nsv457287 CNV gain 19166990
nsv471265 CNV gain 18288195
nsv570777 CNV gain 21841781
nsv570779 CNV gain 21841781
nsv570781 CNV gain 21841781

Relevant External Links for SPATA41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA41 Gene

Disorders for SPATA41 Gene

Relevant External Links for SPATA41

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SPATA41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA41 Gene

Publications for SPATA41 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SPATA41 Gene

Sources for SPATA41 Gene

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