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Aliases for SPATA33 Gene

Aliases for SPATA33 Gene

  • Spermatogenesis Associated 33 2 3
  • C16orf55 3 4 6
  • Spermatogenesis-Associated Protein 33 3
  • Chromosome 16 Open Reading Frame 55 2

External Ids for SPATA33 Gene

Previous Symbols for SPATA33 Gene

  • C16orf55

Summaries for SPATA33 Gene

GeneCards Summary for SPATA33 Gene

SPATA33 (Spermatogenesis Associated 33) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA33 Gene

Genomics for SPATA33 Gene

Genomic Location for SPATA33 Gene

Start:
89,657,744 bp from pter
End:
89,671,272 bp from pter
Size:
13,529 bases
Orientation:
Plus strand

Genomic View for SPATA33 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA33 Gene

No data available for Regulatory Elements for SPATA33 Gene

Proteins for SPATA33 Gene

  • Protein details for SPATA33 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96N06-SPT33_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 33
    Protein Accession:
    Q96N06
    Secondary Accessions:
    • A8WFL2
    • B4DZN8

    Protein attributes for SPATA33 Gene

    Size:
    139 amino acids
    Molecular mass:
    15461 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA33 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA33 Gene

Proteomics data for SPATA33 Gene at MOPED

Post-translational modifications for SPATA33 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SPATA33 Gene

Domains for SPATA33 Gene

Protein Domains for SPATA33 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPATA33: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA33 Gene

Function for SPATA33 Gene

Phenotypes for SPATA33 Gene

GenomeRNAi human phenotypes for SPATA33:
genes like me logo Genes that share phenotypes with SPATA33: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA33 Gene

Localization for SPATA33 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA33 Gene

Cytoplasm, cytosol. Nucleus.

Gene Ontology (GO) - Cellular Components for SPATA33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm --
GO:0005829 cytosol IEA --
genes like me logo Genes that share ontologies with SPATA33: view

No data available for Subcellular locations from COMPARTMENTS for SPATA33 Gene

Pathways for SPATA33 Gene

SuperPathways for SPATA33 Gene

No Data Available

Interacting Proteins for SPATA33 Gene

Gene Ontology (GO) - Biological Process for SPATA33 Gene

None

No data available for Pathways by source for SPATA33 Gene

Transcripts for SPATA33 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA33 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d · 10e · 10f
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - - -
SP4: - - - - - - -
SP5: - - -
SP6: - - - - - - -
SP7: - - - - - - -
SP8: - -
SP9: - - - - - -
SP10: - - - - - -
SP11:

Relevant External Links for SPATA33 Gene

GeneLoc Exon Structure for
SPATA33
ECgene alternative splicing isoforms for
SPATA33

Expression for SPATA33 Gene

mRNA expression in normal human tissues for SPATA33 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA33 Gene

This gene is overexpressed in Testis (13.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA33 Gene

genes like me logo Genes that share expressions with SPATA33: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA33 Gene

Orthologs for SPATA33 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA33 35
  • 99.05 (n)
  • 99.29 (a)
SPATA33 36
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SPATA33 35
  • 67.65 (n)
  • 49.26 (a)
dog
(Canis familiaris)
Mammalia SPATA33 36
  • 51 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 4732415M23Rik 16
Spata33 35
  • 72.47 (n)
  • 59.85 (a)
Spata33 36
  • 50 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Spata33 35
  • 70.77 (n)
  • 60 (a)
Species with no ortholog for SPATA33:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA33 Gene

ENSEMBL:
Gene Tree for SPATA33 (if available)
TreeFam:
Gene Tree for SPATA33 (if available)

Paralogs for SPATA33 Gene

Selected SIMAP similar genes for SPATA33 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with SPATA33: view

No data available for Paralogs for SPATA33 Gene

Variants for SPATA33 Gene

Sequence variations from dbSNP and Humsavar for SPATA33 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs154662 -- 89,661,493(+) ACCTT(C/T)TTCCT intron-variant, nc-transcript-variant, utr-variant-3-prime
rs164753 -- 89,661,187(+) AATCA(C/T)TGTGG intron-variant, nc-transcript-variant, utr-variant-3-prime
rs166297 -- 89,664,777(+) CAACC(A/G)GAATG intron-variant
rs171805 -- 89,667,206(+) ttacc(A/G)ctaga intron-variant
rs185421 -- 89,663,237(+) attcc(A/C)tttCT intron-variant

Relevant External Links for SPATA33 Gene

HapMap Linkage Disequilibrium report
SPATA33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA33 Gene

Disorders for SPATA33 Gene

No disorders were found for SPATA33 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA33 Gene

Publications for SPATA33 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. A novel testis-enriched gene Spata33 is expressed during spermatogenesis. (PMID: 23844118) Chen H. … Zhou R. (PLoS ONE 2013) 2 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4
  5. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3

Products for SPATA33 Gene

Sources for SPATA33 Gene

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