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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SPATA33 Gene

protein-coding   GIFtS: 31
GCID: GC16P089733

Spermatogenesis Associated 33

(Previous name: chromosome 16 open reading frame 55)
(Previous symbol: C16orf55)
  Search for SPATA33
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Spermatogenesis Associated 331 2
C16orf551 2
Chromosome 16 Open Reading Frame 551
Uncharacterized Protein C16orf552

External Ids:    HGNC: 264631   Entrez Gene: 1240452   Ensembl: ENSG000001675237   OMIM: 6154095   UniProtKB: Q96N063   

Export aliases for SPATA33 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SPATA33 Gene: 
SPATA33 (spermatogenesis associated 33) is a protein-coding gene.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for SPATA33
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSPATA33 promoter sequence
   Search SABiosciences Chromatin IP Primers for SPATA33

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SPATA33


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q24.3   Ensembl cytogenetic band:  16q24.3   HGNC cytogenetic band: 16q24.3

SPATA33 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPATA33 gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16P089733:  view genomic region     (about GC identifiers)

Start:
89,724,210 bp from pter      End:
89,737,680 bp from pter
Size:
13,471 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: CP055_HUMAN, Q96N06 (See protein sequence)
Recommended Name: Uncharacterized protein C16orf55  
Size: 139 amino acids; 15461 Da
Secondary accessions: A8WFL2

Explore the universe of human proteins at neXtProt for SPATA33: NX_Q96N06

Explore proteomics data for SPATA33 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q96N06

  • SPATA33 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SPATA33 Protein Expression
    REFSEQ proteins (5 alternative transcripts): 
    NP_001258836.1  NP_001258837.1  NP_001258838.1  NP_001258839.1  NP_694570.1  

    ENSEMBL proteins: 
     ENSP00000301031   ENSP00000461933   ENSP00000455761   ENSP00000462403   ENSP00000456696  
     ENSP00000462233   ENSP00000462319   ENSP00000462996  

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    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005829cytosol IEA--

    SPATA33 for ontologies           About GeneDecksing



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    Browse ELISAs at Cloud-Clone Corp. 
    Browse CLIAs at Cloud-Clone Corp.


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    ProtoNet protein and cluster: Q96N06


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 GenomeRNAi human phenotype for SPATA33:
     Decreased viability with pacli 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for SPATA33 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SPATA33

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SPATA33 (CP055)

    Search CenterWatch for drugs/clinical trials and news about SPATA33 / CP055

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SPATA33 gene (5 alternative transcripts): 
    NM_001271907.1  NM_001271908.1  NM_001271909.1  NM_001271910.1  NM_153025.2  

    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000301031(uc002fnw.1 uc010vpk.1) ENST00000566204 ENST00000565890(uc002fny.2)
    ENST00000457689 ENST00000567827 ENST00000564238(uc002fnx.4) ENST00000568929
    ENST00000566857 ENST00000579310
    miRNA
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    Inhib. RNA
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    Primer
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    24/99 AceView cDNA sequences (see all 99):

    BM853395 BM684785 CR606992 AW274988 AW070989 AI655320 BU844820 AW002406 
    AA555330 BM846416 AA319434 AI969920 CR607009 AW298386 BM683984 CD369549 
    AI024723 AW137815 CB216379 CR613671 H20390 BG434751 BQ575829 AA884223 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SPATA33 (see all 11)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c · 10d · 10e · 10f
    SP1:              -     -     -     -     -           -     -     -     -     -     -                                       
    SP2:                    -     -     -     -           -     -     -     -     -     -                                       
    SP3:                          -     -     -           -     -     -     -     -     -                                       
    SP4:                          -     -     -                 -     -     -     -                                             
    SP5:                          -     -     -                                                                                 


    ECgene alternative splicing isoforms for SPATA33

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SPATA33 expression in normal human tissues (normalized intensities)      SPATA33 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SPATA33 Expression
    About this image


    SPATA33 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Pancreas (Endocrine System)
             Posterior foregut-like cells ( A scalable, suspension protocol for derivation of...
     
     Testis (Reproductive System)

    See SPATA33 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SPATA33
        SABiosciences Custom PCR Arrays for SPATA33
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPATA33

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of human and mouse.

    Orthologs for SPATA33 gene from 1/4 species (see all 4)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia 4732415M23Rik1 , 5 RIKEN cDNA 4732415M23 gene1, 5 72.18(n)1
    58.68(a)1
      8 (72.08 cM)5
    3208691  NM_177279.41  NP_796253.21 
     1232128585 


    ENSEMBL Gene Tree for SPATA33 (if available)
    TreeFam Gene Tree for SPATA33 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/450 SNPs in SPATA33 are shown (see all 450)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1499065411,2
    --75432909(+) GGAAGC/TCTGAT 1 -- ut310--------
    rs1891009521,2
    --75432925(+) TAGTGA/GCAGTG 1 -- ut310--------
    rs169659411,2
    C,F,H--75432981(+) GATCTG/TCCATT 1 -- ut3111Minor allele frequency- T:0.03NA NS EA WA 1346
    rs1449410041,2
    --75433003(+) GTGGCC/TAGTGG 1 -- ut310--------
    rs1490446071,2
    C--75433113(+) GGCCTA/GTGTAG 1 -- ut310--------
    rs1431398331,2
    --75433114(+) GCCTAG/TGTAGT 1 -- ut310--------
    rs766907551,2
    C--75433198(+) CAAAAA/GAAAAA 1 -- ds50010--------
    rs347562951,2
    C--75433390(+) GGTTTT/GTTACA 1 -- ds50011Minor allele frequency- G:0.00NA 2
    rs1810016821,2
    --75433392(+) TTTGTC/TACATA 1 -- ds50010--------
    rs1404195581,2
    --75433439(+) AACTCA/GTCATT 1 -- ds50010--------

    HapMap Linkage Disequilibrium report for SPATA33 (89724210 - 89737680 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SPATA33: --
    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers for resequencing SPATA33
    DNA2.0 Custom Variant and Variant Library Synthesis for SPATA33

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    SPATA33 for disorders           About MalaCards
    OMIM gene information: 615409    OMIM disorders: --


    SPATA33 for disorders           About GeneDecksing


    Export disorders for SPATA33 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SPATA33 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SPATA33)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A novel testis-enriched gene Spata33 is expressed duri ng spermatogenesis. (PubMed id 23844118)1, 3 Chen H....Zhou R. (2013)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Genome-wide association study in Han Chinese identifie s three novel loci for human height. (PubMed id 23456168)1 Hao Y....Gu D. (2013)
    4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PubMed id 15342556)1 Suzuki Y.... Sugano S. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    7. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (1996)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 124045 HGNC: 26463 AceView: FLJ31606 Ensembl:ENSG00000167523 euGenes: HUgn124045
    ECgene: SPATA33 H-InvDB: SPATA33

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SPATA33 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SPATA33 gene:
    Search GeneIP for patents involving SPATA33

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
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