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Aliases for SPATA31E1 Gene

Aliases for SPATA31E1 Gene

  • SPATA31 Subfamily E, Member 1 2 3
  • Family With Sequence Similarity 75, Member E1 2 3
  • Protein FAM75E1 3 4
  • C9orf79 3 4
  • FAM75E1 3 4
  • Spermatogenesis-Associated Protein 31E1 3
  • Chromosome 9 Open Reading Frame 79 2
  • FAM75-Like Protein C9orf79 3
  • XXyac-YM21GA2.5 3

External Ids for SPATA31E1 Gene

Previous Symbols for SPATA31E1 Gene

  • C9orf79
  • FAM75E1

Summaries for SPATA31E1 Gene

GeneCards Summary for SPATA31E1 Gene

SPATA31E1 (SPATA31 Subfamily E, Member 1) is a Protein Coding gene. An important paralog of this gene is SPATA31A1.

UniProtKB/Swiss-Prot for SPATA31E1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31E1 Gene

Genomics for SPATA31E1 Gene

Genomic Location for SPATA31E1 Gene

Start:
87,882,826 bp from pter
End:
87,888,899 bp from pter
Size:
6,074 bases
Orientation:
Plus strand

Genomic View for SPATA31E1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31E1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31E1 Gene

No data available for Regulatory Elements for SPATA31E1 Gene

Proteins for SPATA31E1 Gene

  • Protein details for SPATA31E1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUB1-S31E1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31E1
    Protein Accession:
    Q6ZUB1
    Secondary Accessions:
    • B2RPB1
    • Q5SQC9
    • Q8NA41
    • Q8ND27

    Protein attributes for SPATA31E1 Gene

    Size:
    1445 amino acids
    Molecular mass:
    157136 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04087.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAD39098.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for SPATA31E1 Gene

Proteomics data for SPATA31E1 Gene at MOPED

Post-translational modifications for SPATA31E1 Gene

  • Glycosylation at Asn408, Asn819, Asn906, and Asn1160

Other Protein References for SPATA31E1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31E1 Gene

Domains for SPATA31E1 Gene

Protein Domains for SPATA31E1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

S31E1_HUMAN
Family:
  • Belongs to the SPATA31 family.:
    • Q6ZUB1
genes like me logo Genes that share domains with SPATA31E1: view

No data available for Gene Families for SPATA31E1 Gene

Function for SPATA31E1 Gene

Molecular function for SPATA31E1 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31E1 Gene

Localization for SPATA31E1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31E1 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31E1: view

Pathways for SPATA31E1 Gene

SuperPathways for SPATA31E1 Gene

No Data Available

Interacting Proteins for SPATA31E1 Gene

Selected Interacting proteins: Q6ZUB1-S31E1_HUMAN for SPATA31E1 Gene via MINT I2D

Symbol External ID(s) Details
MYC
--

Gene Ontology (GO) - Biological Process for SPATA31E1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31E1: view

No data available for Pathways by source for SPATA31E1 Gene

Transcripts for SPATA31E1 Gene

mRNA/cDNA for SPATA31E1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31E1 Gene

SPATA31 subfamily E, member 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31E1 Gene

No ASD Table

Relevant External Links for SPATA31E1 Gene

GeneLoc Exon Structure for
SPATA31E1
ECgene alternative splicing isoforms for
SPATA31E1

Expression for SPATA31E1 Gene

mRNA expression in normal human tissues for SPATA31E1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31E1 Gene

This gene is overexpressed in Testis (50.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA31E1 Gene

SOURCE GeneReport for Unigene cluster for SPATA31E1 Gene Hs.130672

genes like me logo Genes that share expressions with SPATA31E1: view

Orthologs for SPATA31E1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA31E1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC738069 36
  • 98.92 (n)
  • 98.13 (a)
SPATA31E1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia LOC101903343 36
  • 58.1 (n)
  • 37.46 (a)
SPATA31E1 37
  • 35 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPATA31E1 36
  • 59.51 (n)
  • 39.35 (a)
SPATA31E1 37
  • 36 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700014D04Rik 37
  • 20 (a)
ManyToMany
Species with no ortholog for SPATA31E1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA31E1 Gene

ENSEMBL:
Gene Tree for SPATA31E1 (if available)
TreeFam:
Gene Tree for SPATA31E1 (if available)

Paralogs for SPATA31E1 Gene

Paralogs for SPATA31E1 Gene

Pseudogenes.org Pseudogenes for SPATA31E1 Gene

genes like me logo Genes that share paralogs with SPATA31E1: view

Variants for SPATA31E1 Gene

Sequence variations from dbSNP and Humsavar for SPATA31E1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs3934636 -- 87,889,042(+) TCTGC(C/T)CCTTC downstream-variant-500B
rs3935449 -- 87,883,507(-) CCTGC(A/C)CCAGG intron-variant
rs4072357 -- 87,883,295(+) TTCTG(C/T)GATGG intron-variant
rs4076794 - 87,886,599(-) CCCTT(C/G)TCAGA reference, missense
rs4076795 - 87,886,533(-) GCAAA(G/T)TCAGA missense, reference

Relevant External Links for SPATA31E1 Gene

HapMap Linkage Disequilibrium report
SPATA31E1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SPATA31E1 Gene

Disorders for SPATA31E1 Gene

No disorders were found for SPATA31E1 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA31E1 Gene

Publications for SPATA31E1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
  3. The SH3 domain of postsynaptic density 95 mediates inflammatory pain through phosphatidylinositol-3-kinase recruitment. (PMID: 20467438) Arbuckle M.I. … Grant S.G. (EMBO Rep. 2010) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

Products for SPATA31E1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31E1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31E1
    • Block miRNA regulation of SPATA31E1 using miScript Target Protectors

    Sources for SPATA31E1 Gene

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