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Aliases for SPATA31E1 Gene

Aliases for SPATA31E1 Gene

  • SPATA31 Subfamily E, Member 1 2 3
  • Family With Sequence Similarity 75, Member E1 2 3
  • Protein FAM75E1 3 4
  • C9orf79 3 4
  • FAM75E1 3 4
  • Spermatogenesis-Associated Protein 31E1 3
  • Chromosome 9 Open Reading Frame 79 2
  • FAM75-Like Protein C9orf79 3
  • XXyac-YM21GA2.5 3

External Ids for SPATA31E1 Gene

Previous HGNC Symbols for SPATA31E1 Gene

  • C9orf79
  • FAM75E1

Previous GeneCards Identifiers for SPATA31E1 Gene

  • GC09P090499

Summaries for SPATA31E1 Gene

GeneCards Summary for SPATA31E1 Gene

SPATA31E1 (SPATA31 Subfamily E, Member 1) is a Protein Coding gene. An important paralog of this gene is SPATA31A1.

UniProtKB/Swiss-Prot for SPATA31E1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31E1 Gene

Genomics for SPATA31E1 Gene

Genomic Location for SPATA31E1 Gene

Start:
87,882,826 bp from pter
End:
87,888,899 bp from pter
Size:
6,074 bases
Orientation:
Plus strand

Genomic View for SPATA31E1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31E1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31E1 Gene

No data available for Regulatory Elements for SPATA31E1 Gene

Proteins for SPATA31E1 Gene

  • Protein details for SPATA31E1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUB1-S31E1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31E1
    Protein Accession:
    Q6ZUB1
    Secondary Accessions:
    • B2RPB1
    • Q5SQC9
    • Q8NA41
    • Q8ND27

    Protein attributes for SPATA31E1 Gene

    Size:
    1445 amino acids
    Molecular mass:
    157136 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04087.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=CAD39098.1; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for SPATA31E1 Gene

Proteomics data for SPATA31E1 Gene at MOPED

Post-translational modifications for SPATA31E1 Gene

  • Glycosylation at Asn408, Asn819, Asn906, and Asn1160
  • Modification sites at PhosphoSitePlus

Other Protein References for SPATA31E1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31E1 Gene

Domains for SPATA31E1 Gene

Protein Domains for SPATA31E1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6ZUB1

UniProtKB/Swiss-Prot:

S31E1_HUMAN :
  • Q6ZUB1
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31E1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31E1 Gene

Function for SPATA31E1 Gene

Molecular function for SPATA31E1 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31E1
    • Block miRNA regulation of SPATA31E1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31E1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31E1 Gene

    Localization for SPATA31E1 Gene

    Subcellular locations from UniProtKB/Swiss-Prot for SPATA31E1 Gene

    Membrane; Single-pass membrane protein.

    Gene Ontology (GO) - Cellular Components for SPATA31E1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0016021 integral component of membrane IEA --
    genes like me logo Genes that share ontologies with SPATA31E1: view

    No data available for Subcellular locations from COMPARTMENTS for SPATA31E1 Gene

    Pathways for SPATA31E1 Gene

    SuperPathways for SPATA31E1 Gene

    No Data Available

    Interacting Proteins for SPATA31E1 Gene

    Selected Interacting proteins: Q6ZUB1-S31E1_HUMAN for SPATA31E1 Gene via MINT I2D

    Symbol External ID(s) Details
    MYC
    --

    Gene Ontology (GO) - Biological Process for SPATA31E1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0007283 spermatogenesis IEA --
    GO:0030154 cell differentiation IEA --
    genes like me logo Genes that share ontologies with SPATA31E1: view

    No data available for Pathways by source for SPATA31E1 Gene

    Transcripts for SPATA31E1 Gene

    mRNA/cDNA for SPATA31E1 Gene

    (1) REFSEQ mRNAs :
    (8) Selected AceView cDNA sequences:
    (5) Additional mRNA sequences :
    (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for SPATA31E1 Gene

    SPATA31 subfamily E, member 1:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31E1
      • Block miRNA regulation of SPATA31E1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31E1

      Primer Products

      • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPATA31E1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31E1 Gene

      No ASD Table

      Relevant External Links for SPATA31E1 Gene

      GeneLoc Exon Structure for
      SPATA31E1
      ECgene alternative splicing isoforms for
      SPATA31E1

      Expression for SPATA31E1 Gene

      mRNA expression in normal human tissues for SPATA31E1 Gene

      mRNA differential expression in normal tissues according to GTEx for SPATA31E1 Gene

      This gene is overexpressed in Testis (50.4).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA31E1 Gene

      SOURCE GeneReport for Unigene cluster for SPATA31E1 Gene Hs.130672

      genes like me logo Genes that share expressions with SPATA31E1: view

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31E1 Gene

      Orthologs for SPATA31E1 Gene

      This gene was present in the common ancestor of mammals.

      Orthologs for SPATA31E1 Gene

      Organism Taxonomy Gene Similarity Type Details
      chimpanzee
      (Pan troglodytes)
      Mammalia LOC738069 35
      • 98.92 (n)
      • 98.13 (a)
      SPATA31E1 36
      • 98 (a)
      OneToOne
      cow
      (Bos Taurus)
      Mammalia LOC101903343 35
      • 58.1 (n)
      • 37.46 (a)
      SPATA31E1 36
      • 35 (a)
      OneToOne
      dog
      (Canis familiaris)
      Mammalia SPATA31E1 35
      • 59.51 (n)
      • 39.35 (a)
      SPATA31E1 36
      • 36 (a)
      OneToOne
      mouse
      (Mus musculus)
      Mammalia 1700014D04Rik 36
      • 20 (a)
      ManyToMany
      Species with no ortholog for SPATA31E1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rat (Rattus norvegicus)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for SPATA31E1 Gene

      ENSEMBL:
      Gene Tree for SPATA31E1 (if available)
      TreeFam:
      Gene Tree for SPATA31E1 (if available)

      Paralogs for SPATA31E1 Gene

      Paralogs for SPATA31E1 Gene

      Pseudogenes.org Pseudogenes for SPATA31E1 Gene

      genes like me logo Genes that share paralogs with SPATA31E1: view

      Variants for SPATA31E1 Gene

      Sequence variations from dbSNP and Humsavar for SPATA31E1 Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs3934636 -- 87,889,042(+) TCTGC(C/T)CCTTC downstream-variant-500B
      rs3935449 -- 87,883,507(-) CCTGC(A/C)CCAGG intron-variant
      rs4072357 -- 87,883,295(+) TTCTG(C/T)GATGG intron-variant
      rs4076794 - 87,886,599(-) CCCTT(C/G)TCAGA reference, missense
      rs4076795 - 87,886,533(-) GCAAA(G/T)TCAGA missense, reference

      Relevant External Links for SPATA31E1 Gene

      HapMap Linkage Disequilibrium report
      SPATA31E1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA31E1 Gene

      Disorders for SPATA31E1 Gene

      No disorders were found for SPATA31E1 Gene.

      No data available for UniProtKB/Swiss-Prot for SPATA31E1 Gene

      Publications for SPATA31E1 Gene

      1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
      2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4
      3. The SH3 domain of postsynaptic density 95 mediates inflammatory pain through phosphatidylinositol-3-kinase recruitment. (PMID: 20467438) Arbuckle M.I. … Grant S.G. (EMBO Rep. 2010) 3
      4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
      5. The full-ORF clone resource of the German cDNA consortium. (PMID: 17974005) Bechtel S. … Schupp I. (BMC Genomics 2007) 4

      Products for SPATA31E1 Gene

      Sources for SPATA31E1 Gene

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