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Aliases for SPATA31D5P Gene

Aliases for SPATA31D5P Gene

  • SPATA31 Subfamily D, Member 5, Pseudogene 2 3
  • Family With Sequence Similarity 75, Member D5, Pseudogene 2 3
  • Family With Sequence Similarity 75, Member D5 2
  • FAM75-Like Protein FLJ46321 Pseudogene 3
  • FAM75D5P 3
  • FAM75D5 3

External Ids for SPATA31D5P Gene

Previous HGNC Symbols for SPATA31D5P Gene

  • FAM75D5

Previous GeneCards Identifiers for SPATA31D5P Gene

  • GC09P084534
  • GC09P084535
  • GC09P084536

Summaries for SPATA31D5P Gene

GeneCards Summary for SPATA31D5P Gene

SPATA31D5P (SPATA31 Subfamily D, Member 5, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D5P Gene

Genomics for SPATA31D5P Gene

Genomic Location for SPATA31D5P Gene

Start:
81,913,437 bp from pter
End:
81,919,927 bp from pter
Size:
6,491 bases
Orientation:
Plus strand

Genomic View for SPATA31D5P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31D5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D5P Gene

No data available for Regulatory Elements for SPATA31D5P Gene

Proteins for SPATA31D5P Gene

Post-translational modifications for SPATA31D5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA31D5P Gene

Domains for SPATA31D5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA31D5P Gene

Function for SPATA31D5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31D5P Gene

Localization for SPATA31D5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA31D5P Gene

Pathways for SPATA31D5P Gene

SuperPathways for SPATA31D5P Gene

No Data Available

Interacting Proteins for SPATA31D5P Gene

Gene Ontology (GO) - Biological Process for SPATA31D5P Gene

None

No data available for Pathways by source for SPATA31D5P Gene

Transcripts for SPATA31D5P Gene

mRNA/cDNA for SPATA31D5P Gene

(6) Additional mRNA sequences :
(7) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D5P Gene

SPATA31 subfamily D, member 5, pseudogene:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D5P
    • Block miRNA regulation of SPATA31D5P using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D5P

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D5P Gene

    No ASD Table

    Relevant External Links for SPATA31D5P Gene

    GeneLoc Exon Structure for
    SPATA31D5P
    ECgene alternative splicing isoforms for
    SPATA31D5P

    Expression for SPATA31D5P Gene

    mRNA expression in normal human tissues for SPATA31D5P Gene

    mRNA differential expression in normal tissues according to GTEx for SPATA31D5P Gene

    This gene is overexpressed in Testis (51.8).

    SOURCE GeneReport for Unigene cluster for SPATA31D5P Gene Hs.215235

    genes like me logo Genes that share expressions with SPATA31D5P: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SPATA31D5P Gene

    Orthologs for SPATA31D5P Gene

    Evolution for SPATA31D5P Gene

    ENSEMBL:
    Gene Tree for SPATA31D5P (if available)
    TreeFam:
    Gene Tree for SPATA31D5P (if available)

    No data available for Orthologs for SPATA31D5P Gene

    Paralogs for SPATA31D5P Gene

    No data available for Paralogs for SPATA31D5P Gene

    Variants for SPATA31D5P Gene

    Sequence variations from dbSNP and Humsavar for SPATA31D5P Gene

    SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
    rs513556 -- 81,917,284(-) ATGCT(C/G)TCTGA nc-transcript-variant
    rs515305 -- 81,917,095(-) TTGAA(A/G)GACTT nc-transcript-variant
    rs515355 -- 81,917,075(-) TACAG(C/G)ATTGG nc-transcript-variant
    rs515389 -- 81,917,067(-) TGGTA(C/G)CTGGA nc-transcript-variant
    rs528073 -- 81,918,386(-) GCTGT(A/G)TGTGG nc-transcript-variant

    Relevant External Links for SPATA31D5P Gene

    HapMap Linkage Disequilibrium report
    SPATA31D5P

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA31D5P Gene

    Disorders for SPATA31D5P Gene

    No disorders were found for SPATA31D5P Gene.

    No data available for UniProtKB/Swiss-Prot for SPATA31D5P Gene

    Publications for SPATA31D5P Gene

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

    Products for SPATA31D5P Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D5P
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D5P
      • Block miRNA regulation of SPATA31D5P using miScript Target Protectors

      Sources for SPATA31D5P Gene

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