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Aliases for SPATA31D4 Gene

Aliases for SPATA31D4 Gene

  • SPATA31 Subfamily D Member 4 2 3 5
  • Family With Sequence Similarity 75, Member D4 2 3
  • FAM75D4 3 4
  • Putative Spermatogenesis-Associated Protein 31D4 3
  • FAM75-Like Protein FLJ43859 3
  • Putative Protein FAM75D4 3
  • Protein FAM75D4 4

External Ids for SPATA31D4 Gene

Previous HGNC Symbols for SPATA31D4 Gene

  • FAM75D4

Previous GeneCards Identifiers for SPATA31D4 Gene

  • GC09P084546

Summaries for SPATA31D4 Gene

GeneCards Summary for SPATA31D4 Gene

SPATA31D4 (SPATA31 Subfamily D Member 4) is a Protein Coding gene. An important paralog of this gene is SPATA31D3.

UniProtKB/Swiss-Prot for SPATA31D4 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D4 Gene

Genomics for SPATA31D4 Gene

Regulatory Elements for SPATA31D4 Gene

Enhancers for SPATA31D4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F082923 1 ENCODE 16.2 +995.1 995093 0.1 PKNOX1 FEZF1 GLI4 ZNF2 ZNF302 KLF7 FOS ZNF263 SP3 REST ENSG00000232749 LOC442427 MTCO3P40 ENSG00000225085 DDX10P2 ENSG00000235377 SPATA31D2P SPATA31D4 LOC105376108 ENSG00000230846
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA31D4 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA31D4 Gene

Chromosome:
9
Start:
81,928,428 bp from pter
End:
81,934,998 bp from pter
Size:
6,571 bases
Orientation:
Plus strand

Genomic View for SPATA31D4 Gene

Genes around SPATA31D4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA31D4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA31D4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D4 Gene

Proteins for SPATA31D4 Gene

  • Protein details for SPATA31D4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUB0-S31D4_HUMAN
    Recommended name:
    Putative spermatogenesis-associated protein 31D4
    Protein Accession:
    Q6ZUB0

    Protein attributes for SPATA31D4 Gene

    Size:
    917 amino acids
    Molecular mass:
    102390 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPATA31D4 Gene

Post-translational modifications for SPATA31D4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31D4 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D4 Gene

Domains & Families for SPATA31D4 Gene

Protein Domains for SPATA31D4 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6ZUB0

UniProtKB/Swiss-Prot:

S31D4_HUMAN :
  • Belongs to the SPATA31 family.
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31D4: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31D4 Gene

Function for SPATA31D4 Gene

Molecular function for SPATA31D4 Gene

UniProtKB/Swiss-Prot Function:
May play a role in spermatogenesis.

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA31D4 Gene

Localization for SPATA31D4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D4 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31D4: view

No data available for Subcellular locations from COMPARTMENTS for SPATA31D4 Gene

Pathways & Interactions for SPATA31D4 Gene

SuperPathways for SPATA31D4 Gene

No Data Available

Interacting Proteins for SPATA31D4 Gene

Gene Ontology (GO) - Biological Process for SPATA31D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31D4: view

No data available for Pathways by source and SIGNOR curated interactions for SPATA31D4 Gene

Transcripts for SPATA31D4 Gene

mRNA/cDNA for SPATA31D4 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D4 Gene

SPATA31 subfamily D, member 4:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D4 Gene

No ASD Table

Relevant External Links for SPATA31D4 Gene

GeneLoc Exon Structure for
SPATA31D4
ECgene alternative splicing isoforms for
SPATA31D4

Expression for SPATA31D4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA31D4 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31D4 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of SPATA31D4 Gene:

SPATA31D4

SOURCE GeneReport for Unigene cluster for SPATA31D4 Gene:

Hs.722630
genes like me logo Genes that share expression patterns with SPATA31D4: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA31D4 Gene

Orthologs for SPATA31D4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA31D4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100609070 34
  • 93.12 (n)
cow
(Bos Taurus)
Mammalia LOC782251 34
  • 72.13 (n)
dog
(Canis familiaris)
Mammalia FAM75D1 34
  • 68.74 (n)
mouse
(Mus musculus)
Mammalia Spata31d1a 34 16
  • 57.62 (n)
rat
(Rattus norvegicus)
Mammalia Spata31d3 34
  • 55.21 (n)
Species where no ortholog for SPATA31D4 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA31D4 Gene

ENSEMBL:
Gene Tree for SPATA31D4 (if available)
TreeFam:
Gene Tree for SPATA31D4 (if available)

Paralogs for SPATA31D4 Gene

(2) SIMAP similar genes for SPATA31D4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATA31D4: view

Variants for SPATA31D4 Gene

Sequence variations from dbSNP and Humsavar for SPATA31D4 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs111661840 -- 81,934,259(+) AAAAC(C/T)TTTTC intron-variant, utr-variant-3-prime
rs138456481 -- 81,932,805(+) ACCAC(C/G)GCGTT intron-variant, reference, missense
rs143051195 -- 81,933,289(+) AAATT(A/G)GAAAC intron-variant, utr-variant-3-prime
rs144258741 -- 81,934,085(+) CAGCT(A/G)CAAAG intron-variant, utr-variant-3-prime
rs151243434 -- 81,932,804(+) GACCA(C/T)GGCGT intron-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SPATA31D4 Gene

Variant ID Type Subtype PubMed ID
esv2193928 CNV deletion 18987734
esv23543 CNV gain+loss 19812545
esv2738657 CNV deletion 23290073
nsv508555 CNV deletion 20534489
nsv6584 CNV deletion 18451855
nsv821665 CNV loss 15273396
nsv831639 CNV loss 17160897
nsv8536 CNV loss 18304495
nsv972405 CNV duplication 23825009
nsv972764 CNV duplication 23825009

Relevant External Links for SPATA31D4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA31D4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA31D4 Gene

Disorders for SPATA31D4 Gene

Relevant External Links for SPATA31D4

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA31D4

No disorders were found for SPATA31D4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA31D4 Gene

Publications for SPATA31D4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4 64

Products for SPATA31D4 Gene

Sources for SPATA31D4 Gene

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