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Aliases for SPATA31D4 Gene

Aliases for SPATA31D4 Gene

  • SPATA31 Subfamily D, Member 4 2 3
  • Family With Sequence Similarity 75, Member D4 2 3
  • FAM75D4 3 4
  • Putative Spermatogenesis-Associated Protein 31D4 3
  • FAM75-Like Protein FLJ43859 3
  • Putative Protein FAM75D4 3
  • Protein FAM75D4 4

External Ids for SPATA31D4 Gene

Previous Symbols for SPATA31D4 Gene

  • FAM75D4

Summaries for SPATA31D4 Gene

GeneCards Summary for SPATA31D4 Gene

SPATA31D4 (SPATA31 Subfamily D, Member 4) is a Protein Coding gene. An important paralog of this gene is SPATA31D3.

UniProtKB/Swiss-Prot for SPATA31D4 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D4 Gene

Genomics for SPATA31D4 Gene

Genomic Location for SPATA31D4 Gene

Start:
81,928,428 bp from pter
End:
81,934,998 bp from pter
Size:
6,571 bases
Orientation:
Plus strand

Genomic View for SPATA31D4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31D4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D4 Gene

No data available for Regulatory Elements for SPATA31D4 Gene

Proteins for SPATA31D4 Gene

  • Protein details for SPATA31D4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZUB0-S31D4_HUMAN
    Recommended name:
    Putative spermatogenesis-associated protein 31D4
    Protein Accession:
    Q6ZUB0
    Secondary Accessions:

    Protein attributes for SPATA31D4 Gene

    Size:
    917 amino acids
    Molecular mass:
    102390 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPATA31D4 Gene

Proteomics data for SPATA31D4 Gene at MOPED

Post-translational modifications for SPATA31D4 Gene

No Post-translational modifications

Other Protein References for SPATA31D4 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D4 Gene

Domains for SPATA31D4 Gene

Protein Domains for SPATA31D4 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

S31D4_HUMAN
Family:
  • Belongs to the SPATA31 family.:
    • Q6ZUB0
genes like me logo Genes that share domains with SPATA31D4: view

No data available for Gene Families for SPATA31D4 Gene

Function for SPATA31D4 Gene

Molecular function for SPATA31D4 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31D4 Gene

Localization for SPATA31D4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D4 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31D4: view

Pathways for SPATA31D4 Gene

SuperPathways for SPATA31D4 Gene

No Data Available

Interacting Proteins for SPATA31D4 Gene

Gene Ontology (GO) - Biological Process for SPATA31D4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31D4: view

No data available for Pathways by source for SPATA31D4 Gene

Transcripts for SPATA31D4 Gene

mRNA/cDNA for SPATA31D4 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D4 Gene

SPATA31 subfamily D, member 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D4 Gene

No ASD Table

Relevant External Links for SPATA31D4 Gene

GeneLoc Exon Structure for
SPATA31D4
ECgene alternative splicing isoforms for
SPATA31D4

Expression for SPATA31D4 Gene

mRNA expression in normal human tissues for SPATA31D4 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31D4 Gene

This gene is overexpressed in Testis (53.0).

SOURCE GeneReport for Unigene cluster for SPATA31D4 Gene Hs.722630

genes like me logo Genes that share expressions with SPATA31D4: view

Orthologs for SPATA31D4 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA31D4 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100609070 36
  • 93.12 (n)
  • 88.48 (a)
cow
(Bos Taurus)
Mammalia LOC782251 36
  • 72.13 (n)
  • 55.86 (a)
dog
(Canis familiaris)
Mammalia FAM75D1 36
  • 68.74 (n)
  • 51.9 (a)
mouse
(Mus musculus)
Mammalia Spata31d1a 36
  • 57.62 (n)
  • 37.02 (a)
Spata31d1a 16
rat
(Rattus norvegicus)
Mammalia Spata31d3 36
  • 55.21 (n)
  • 36.06 (a)
Species with no ortholog for SPATA31D4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA31D4 Gene

ENSEMBL:
Gene Tree for SPATA31D4 (if available)
TreeFam:
Gene Tree for SPATA31D4 (if available)

Paralogs for SPATA31D4 Gene

Paralogs for SPATA31D4 Gene

Selected SIMAP similar genes for SPATA31D4 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATA31D4: view

Variants for SPATA31D4 Gene

Sequence variations from dbSNP and Humsavar for SPATA31D4 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs623447 -- 81,932,534(+) TCCTC(C/G)TCTGA reference, missense
rs1887453 -- 81,934,029(-) CCCTG(G/T)GCTCC utr-variant-3-prime
rs7018822 -- 81,933,069(+) GTCTT(A/G)TAGAC utr-variant-3-prime
rs7031316 -- 81,926,743(+) AATCA(C/T)TGATT upstream-variant-2KB
rs7035006 -- 81,933,068(+) AGTCT(C/T)GTAGA utr-variant-3-prime

Relevant External Links for SPATA31D4 Gene

HapMap Linkage Disequilibrium report
SPATA31D4

No data available for Structural Variations from Database of Genomic Variants (DGV) for SPATA31D4 Gene

Disorders for SPATA31D4 Gene

No disorders were found for SPATA31D4 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA31D4 Gene

Publications for SPATA31D4 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

Products for SPATA31D4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D4
    • Block miRNA regulation of SPATA31D4 using miScript Target Protectors

    Sources for SPATA31D4 Gene

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