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Aliases for SPATA31D3 Gene

Aliases for SPATA31D3 Gene

  • SPATA31 Subfamily D Member 3 2 3 5
  • Family With Sequence Similarity 75, Member D3 2 3
  • FAM75D3 3 4
  • LOW QUALITY PROTEIN: Putative Spermatogenesis-Associated Protein 31D3 3
  • Putative Spermatogenesis-Associated Protein 31D3 3
  • Putative FAM75-Like Protein FLJ44082 3
  • FAM75-Like Protein FLJ44082 3
  • Putative Protein FAM75D3 3
  • Protein FAM75D3 4

External Ids for SPATA31D3 Gene

Previous HGNC Symbols for SPATA31D3 Gene

  • FAM75D3

Previous GeneCards Identifiers for SPATA31D3 Gene

  • GC09P084562

Summaries for SPATA31D3 Gene

GeneCards Summary for SPATA31D3 Gene

SPATA31D3 (SPATA31 Subfamily D Member 3) is a Protein Coding gene. An important paralog of this gene is SPATA31D4.

UniProtKB/Swiss-Prot for SPATA31D3 Gene

  • May play a role in spermatogenesis.

Additional gene information for SPATA31D3 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D3 Gene

Genomics for SPATA31D3 Gene

Regulatory Elements for SPATA31D3 Gene

Enhancers for SPATA31D3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H082923 1 ENCODE 14.6 +980.0 980021 0 PKNOX1 ARNT FEZF1 GLI4 ZNF2 ZNF302 FOS KLF7 SP3 REST ENSG00000232749 MTCO3P40 LOC442427 ENSG00000225085 ENSG00000235377 DDX10P2 SPATA31D3 SPATA31D4 SPATA31D2P LOC105376108
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA31D3 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA31D3 Gene

Chromosome:
9
Start:
81,943,500 bp from pter
End:
81,950,094 bp from pter
Size:
6,595 bases
Orientation:
Plus strand

Genomic View for SPATA31D3 Gene

Genes around SPATA31D3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA31D3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA31D3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D3 Gene

Proteins for SPATA31D3 Gene

  • Protein details for SPATA31D3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C874-S31D3_HUMAN
    Recommended name:
    Putative spermatogenesis-associated protein 31D3
    Protein Accession:
    P0C874

    Protein attributes for SPATA31D3 Gene

    Size:
    917 amino acids
    Molecular mass:
    102419 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AK126070; Type=Frameshift; Positions=780; Evidence={ECO:0000305}; Sequence=AK308327; Type=Frameshift; Positions=780; Evidence={ECO:0000305};

neXtProt entry for SPATA31D3 Gene

Post-translational modifications for SPATA31D3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31D3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D3 Gene

Domains & Families for SPATA31D3 Gene

Gene Families for SPATA31D3 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for SPATA31D3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0C874

UniProtKB/Swiss-Prot:

S31D3_HUMAN :
  • Belongs to the SPATA31 family.
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31D3: view

No data available for Suggested Antigen Peptide Sequences for SPATA31D3 Gene

Function for SPATA31D3 Gene

Molecular function for SPATA31D3 Gene

UniProtKB/Swiss-Prot Function:
May play a role in spermatogenesis.

Phenotypes for SPATA31D3 Gene

genes like me logo Genes that share phenotypes with SPATA31D3: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SPATA31D3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA31D3 Gene

Localization for SPATA31D3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D3 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31D3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31D3: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SPATA31D3 Gene

Pathways & Interactions for SPATA31D3 Gene

SuperPathways for SPATA31D3 Gene

No Data Available

Interacting Proteins for SPATA31D3 Gene

Gene Ontology (GO) - Biological Process for SPATA31D3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31D3: view

No data available for Pathways by source and SIGNOR curated interactions for SPATA31D3 Gene

Drugs & Compounds for SPATA31D3 Gene

No Compound Related Data Available

Transcripts for SPATA31D3 Gene

mRNA/cDNA for SPATA31D3 Gene

(2) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D3 Gene

SPATA31 subfamily D, member 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SPATA31D3
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D3 Gene

No ASD Table

Relevant External Links for SPATA31D3 Gene

GeneLoc Exon Structure for
SPATA31D3
ECgene alternative splicing isoforms for
SPATA31D3

Expression for SPATA31D3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA31D3 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31D3 Gene

This gene is overexpressed in Testis (x52.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SPATA31D3 Gene



NURSA nuclear receptor signaling pathways regulating expression of SPATA31D3 Gene:

SPATA31D3

SOURCE GeneReport for Unigene cluster for SPATA31D3 Gene:

Hs.522246
genes like me logo Genes that share expression patterns with SPATA31D3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA31D3 Gene

Orthologs for SPATA31D3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SPATA31D3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100609070 33
  • 93.12 (n)
cow
(Bos Taurus)
Mammalia LOC782251 33
  • 72.13 (n)
dog
(Canis familiaris)
Mammalia FAM75D1 33
  • 68.74 (n)
mouse
(Mus musculus)
Mammalia Spata31d1a 33
  • 57.62 (n)
rat
(Rattus norvegicus)
Mammalia Spata31d3 33
  • 55.21 (n)
Species where no ortholog for SPATA31D3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA31D3 Gene

ENSEMBL:
Gene Tree for SPATA31D3 (if available)
TreeFam:
Gene Tree for SPATA31D3 (if available)

Paralogs for SPATA31D3 Gene

(2) SIMAP similar genes for SPATA31D3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATA31D3: view

Variants for SPATA31D3 Gene

Sequence variations from dbSNP and Humsavar for SPATA31D3 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000341889 -- 81,950,303(+) AGATG(A/G)GCTCT intron-variant, downstream-variant-500B
rs1000678337 -- 81,949,596(+) CCCCA(G/T)GAGCC intron-variant, utr-variant-3-prime
rs1003565473 -- 81,948,012(+) AGGAT(A/G)CTGTG intron-variant, utr-variant-3-prime
rs1008227229 -- 81,949,672(+) CTGTC(A/C)AGGGC intron-variant, utr-variant-3-prime
rs1008980376 -- 81,948,343(+) CGCCC(C/G)TTAGA intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SPATA31D3 Gene

Variant ID Type Subtype PubMed ID
esv23543 CNV gain+loss 19812545
esv2738657 CNV deletion 23290073
nsv508555 CNV deletion 20534489
nsv6584 CNV deletion 18451855
nsv821665 CNV loss 15273396
nsv831639 CNV loss 17160897
nsv8536 CNV loss 18304495
nsv972765 CNV duplication 23825009

Relevant External Links for SPATA31D3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA31D3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA31D3 Gene

Disorders for SPATA31D3 Gene

Relevant External Links for SPATA31D3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA31D3

No disorders were found for SPATA31D3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA31D3 Gene

Publications for SPATA31D3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 60
  2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray SJ … Dunham I (Nature 2004) 3 4 60

Products for SPATA31D3 Gene

Sources for SPATA31D3 Gene

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