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Aliases for SPATA31D3 Gene

Aliases for SPATA31D3 Gene

  • SPATA31 Subfamily D, Member 3 2 3
  • Family With Sequence Similarity 75, Member D3 2 3
  • FAM75D3 3 4
  • Putative Spermatogenesis-Associated Protein 31D3 3
  • Putative FAM75-Like Protein FLJ44082 3
  • FAM75-Like Protein FLJ44082 3
  • Putative Protein FAM75D3 3
  • Protein FAM75D3 4

External Ids for SPATA31D3 Gene

Previous HGNC Symbols for SPATA31D3 Gene

  • FAM75D3

Previous GeneCards Identifiers for SPATA31D3 Gene

  • GC09P084562

Summaries for SPATA31D3 Gene

GeneCards Summary for SPATA31D3 Gene

SPATA31D3 (SPATA31 Subfamily D, Member 3) is a Protein Coding gene. An important paralog of this gene is SPATA31D4.

UniProtKB/Swiss-Prot for SPATA31D3 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D3 Gene

Genomics for SPATA31D3 Gene

Genomic Location for SPATA31D3 Gene

Start:
81,943,500 bp from pter
End:
81,950,094 bp from pter
Size:
6,595 bases
Orientation:
Plus strand

Genomic View for SPATA31D3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31D3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D3 Gene

No data available for Regulatory Elements for SPATA31D3 Gene

Proteins for SPATA31D3 Gene

  • Protein details for SPATA31D3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C874-S31D3_HUMAN
    Recommended name:
    Putative spermatogenesis-associated protein 31D3
    Protein Accession:
    P0C874
    Secondary Accessions:

    Protein attributes for SPATA31D3 Gene

    Size:
    917 amino acids
    Molecular mass:
    102419 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AK126070; Type=Frameshift; Positions=780; Evidence={ECO:0000305}; Sequence=AK308327; Type=Frameshift; Positions=780; Evidence={ECO:0000305};

neXtProt entry for SPATA31D3 Gene

Proteomics data for SPATA31D3 Gene at MOPED

Post-translational modifications for SPATA31D3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31D3 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D3 Gene

Domains for SPATA31D3 Gene

Protein Domains for SPATA31D3 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0C874

UniProtKB/Swiss-Prot:

S31D3_HUMAN :
  • P0C874
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31D3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31D3 Gene

Function for SPATA31D3 Gene

Molecular function for SPATA31D3 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

Phenotypes for SPATA31D3 Gene

genes like me logo Genes that share phenotypes with SPATA31D3: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31D3 Gene

Localization for SPATA31D3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D3 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31D3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31D3: view

No data available for Subcellular locations from COMPARTMENTS for SPATA31D3 Gene

Pathways for SPATA31D3 Gene

SuperPathways for SPATA31D3 Gene

No Data Available

Interacting Proteins for SPATA31D3 Gene

Gene Ontology (GO) - Biological Process for SPATA31D3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31D3: view

No data available for Pathways by source for SPATA31D3 Gene

Transcripts for SPATA31D3 Gene

mRNA/cDNA for SPATA31D3 Gene

(1) Additional mRNA sequences :
(2) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D3 Gene

SPATA31 subfamily D, member 3:
Representative Sequences:

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D3
    • Block miRNA regulation of SPATA31D3 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D3

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPATA31D3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D3 Gene

    No ASD Table

    Relevant External Links for SPATA31D3 Gene

    GeneLoc Exon Structure for
    SPATA31D3
    ECgene alternative splicing isoforms for
    SPATA31D3

    Expression for SPATA31D3 Gene

    mRNA expression in normal human tissues for SPATA31D3 Gene

    mRNA differential expression in normal tissues according to GTEx for SPATA31D3 Gene

    This gene is overexpressed in Testis (52.7).

    Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA31D3 Gene

    SOURCE GeneReport for Unigene cluster for SPATA31D3 Gene Hs.522246

    genes like me logo Genes that share expressions with SPATA31D3: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31D3 Gene

    Orthologs for SPATA31D3 Gene

    This gene was present in the common ancestor of mammals.

    Orthologs for SPATA31D3 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia LOC100609070 35
    • 93.12 (n)
    • 88.48 (a)
    cow
    (Bos Taurus)
    Mammalia LOC782251 35
    • 72.13 (n)
    • 55.75 (a)
    dog
    (Canis familiaris)
    Mammalia FAM75D1 35
    • 68.74 (n)
    • 51.77 (a)
    mouse
    (Mus musculus)
    Mammalia Spata31d1a 35
    • 57.62 (n)
    • 37.02 (a)
    rat
    (Rattus norvegicus)
    Mammalia Spata31d3 35
    • 55.21 (n)
    • 36.06 (a)
    Species with no ortholog for SPATA31D3:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SPATA31D3 Gene

    ENSEMBL:
    Gene Tree for SPATA31D3 (if available)
    TreeFam:
    Gene Tree for SPATA31D3 (if available)

    Paralogs for SPATA31D3 Gene

    Paralogs for SPATA31D3 Gene

    Selected SIMAP similar genes for SPATA31D3 Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with SPATA31D3: view

    Variants for SPATA31D3 Gene

    Sequence variations from dbSNP and Humsavar for SPATA31D3 Gene

    SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
    rs641486 -- 81,949,237(+) CAGGG(C/T)TGGGG utr-variant-3-prime
    rs2782405 -- 81,949,195(+) GCCCT(C/G/T)TAAGA utr-variant-3-prime
    rs11795190 -- 81,949,343(+) TCCTC(C/T)TGAAA utr-variant-3-prime
    rs34475432 -- 81,949,121(+) GGAGC(A/C)CAGGG utr-variant-3-prime
    rs35149852 -- 81,950,590(+) ACACG(-/A)AAAGG downstream-variant-500B

    Relevant External Links for SPATA31D3 Gene

    HapMap Linkage Disequilibrium report
    SPATA31D3

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA31D3 Gene

    Disorders for SPATA31D3 Gene

    No disorders were found for SPATA31D3 Gene.

    No data available for UniProtKB/Swiss-Prot for SPATA31D3 Gene

    Publications for SPATA31D3 Gene

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
    2. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 3 4

    Products for SPATA31D3 Gene

    Sources for SPATA31D3 Gene

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