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Aliases for SPATA31D1 Gene

Aliases for SPATA31D1 Gene

  • SPATA31 Subfamily D, Member 1 2 3
  • Family With Sequence Similarity 75, Member D1 2 3
  • Protein FAM75D1 3 4
  • FAM75D1 3 4
  • FAM75-Like Protein FLJ46321 3

External Ids for SPATA31D1 Gene

Previous HGNC Symbols for SPATA31D1 Gene

  • FAM75D1

Previous GeneCards Identifiers for SPATA31D1 Gene

  • GC09P084624
  • GC09P084630
  • GC09P084636

Summaries for SPATA31D1 Gene

GeneCards Summary for SPATA31D1 Gene

SPATA31D1 (SPATA31 Subfamily D, Member 1) is a Protein Coding gene. An important paralog of this gene is SPATA31A1.

UniProtKB/Swiss-Prot for SPATA31D1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D1 Gene

Genomics for SPATA31D1 Gene

Genomic Location for SPATA31D1 Gene

Chromosome:
9
Start:
81,987,667 bp from pter
End:
81,995,256 bp from pter
Size:
7,590 bases
Orientation:
Plus strand

Genomic View for SPATA31D1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D1 Gene

No data available for Regulatory Elements for SPATA31D1 Gene

Proteins for SPATA31D1 Gene

  • Protein details for SPATA31D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQQ2-S31D1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31D1
    Protein Accession:
    Q6ZQQ2

    Protein attributes for SPATA31D1 Gene

    Size:
    1576 amino acids
    Molecular mass:
    175618 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPATA31D1 Gene

Proteomics data for SPATA31D1 Gene at MOPED

Post-translational modifications for SPATA31D1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31D1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D1 Gene

Domains & Families for SPATA31D1 Gene

Protein Domains for SPATA31D1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPATA31D1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6ZQQ2

UniProtKB/Swiss-Prot:

S31D1_HUMAN :
  • Belongs to the SPATA31 family.
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31D1: view

No data available for Gene Families for SPATA31D1 Gene

Function for SPATA31D1 Gene

Molecular function for SPATA31D1 Gene

UniProtKB/Swiss-Prot Function:
May play a role in spermatogenesis.

Phenotypes for SPATA31D1 Gene

GenomeRNAi human phenotypes for SPATA31D1:
genes like me logo Genes that share phenotypes with SPATA31D1: view

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D1
    • Block miRNA regulation of SPATA31D1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA31D1 Gene

    Localization for SPATA31D1 Gene

    Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D1 Gene

    Membrane; Single-pass membrane protein.

    Gene Ontology (GO) - Cellular Components for SPATA31D1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0016021 integral component of membrane IEA --
    genes like me logo Genes that share ontologies with SPATA31D1: view

    No data available for Subcellular locations from COMPARTMENTS for SPATA31D1 Gene

    Pathways & Interactions for SPATA31D1 Gene

    SuperPathways for SPATA31D1 Gene

    No Data Available

    Interacting Proteins for SPATA31D1 Gene

    STRING Interaction Network Preview (showing 1 interactants - click image to see details)
    http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000341988%0d%0a9606.ENSP00000344818%0d%0a
    Selected Interacting proteins: ENSP00000341988 for SPATA31D1 Gene via STRING

    Symbol External ID(s) Details
    UBC

    Gene Ontology (GO) - Biological Process for SPATA31D1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0007283 spermatogenesis IEA --
    GO:0030154 cell differentiation IEA --
    genes like me logo Genes that share ontologies with SPATA31D1: view

    No data available for Pathways by source and SIGNOR curated interactions for SPATA31D1 Gene

    Drugs & Compounds for SPATA31D1 Gene

    No Compound Related Data Available

    Transcripts for SPATA31D1 Gene

    mRNA/cDNA for SPATA31D1 Gene

    (2) REFSEQ mRNAs :
    (1) Additional mRNA sequences :
    (10) Selected AceView cDNA sequences:
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for SPATA31D1 Gene

    SPATA31 subfamily D, member 1:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D1
      • Block miRNA regulation of SPATA31D1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D1

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D1 Gene

      No ASD Table

      Relevant External Links for SPATA31D1 Gene

      GeneLoc Exon Structure for
      SPATA31D1
      ECgene alternative splicing isoforms for
      SPATA31D1

      Expression for SPATA31D1 Gene

      mRNA expression in normal human tissues for SPATA31D1 Gene

      mRNA differential expression in normal tissues according to GTEx for SPATA31D1 Gene

      This gene is overexpressed in Testis (x51.4).

      Protein differential expression in normal tissues from HIPED for SPATA31D1 Gene

      This gene is overexpressed in Monocytes (59.0) and Neutrophil (6.1).

      Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SPATA31D1 Gene



      SOURCE GeneReport for Unigene cluster for SPATA31D1 Gene Hs.209545

      genes like me logo Genes that share expression patterns with SPATA31D1: view

      Protein tissue co-expression partners for SPATA31D1 Gene

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31D1 Gene

      Orthologs for SPATA31D1 Gene

      This gene was present in the common ancestor of mammals.

      Orthologs for SPATA31D1 Gene

      Organism Taxonomy Gene Similarity Type Details
      cow
      (Bos Taurus)
      Mammalia LOC782251 35
      • 72.3 (n)
      • 54.67 (a)
      SPATA31D1 36
      • 53 (a)
      OneToOne
      dog
      (Canis familiaris)
      Mammalia FAM75D1 35
      • 68.94 (n)
      • 51.73 (a)
      -- 36
      • 48 (a)
      OneToMany
      -- 36
      • 49 (a)
      OneToMany
      mouse
      (Mus musculus)
      Mammalia Spata31d1a 35
      • 57 (n)
      • 37.07 (a)
      Spata31d1a 36
      • 32 (a)
      OneToMany
      Spata31d1b 36
      • 31 (a)
      OneToMany
      Spata31d1c 36
      • 35 (a)
      OneToMany
      Spata31d1d 36
      • 31 (a)
      OneToMany
      chimpanzee
      (Pan troglodytes)
      Mammalia LOC100609070 35
      • 95.43 (n)
      • 91.52 (a)
      SPATA31D1 36
      • 97 (a)
      OneToOne
      rat
      (Rattus norvegicus)
      Mammalia Spata31d3 35
      • 56.49 (n)
      • 36.96 (a)
      Species with no ortholog for SPATA31D1:
      • A. gosspyii yeast (Ashbya gossypii)
      • Actinobacteria (Mycobacterium tuberculosis)
      • African clawed frog (Xenopus laevis)
      • African malaria mosquito (Anopheles gambiae)
      • Alicante grape (Vitis vinifera)
      • alpha proteobacteria (Wolbachia pipientis)
      • amoeba (Dictyostelium discoideum)
      • Archea (Pyrococcus horikoshii)
      • baker's yeast (Saccharomyces cerevisiae)
      • barley (Hordeum vulgare)
      • beta proteobacteria (Neisseria meningitidis)
      • bread mold (Neurospora crassa)
      • chicken (Gallus gallus)
      • Chromalveolata (Phytophthora infestans)
      • common water flea (Daphnia pulex)
      • corn (Zea mays)
      • E. coli (Escherichia coli)
      • filamentous fungi (Aspergillus nidulans)
      • Firmicute bacteria (Streptococcus pneumoniae)
      • fission yeast (Schizosaccharomyces pombe)
      • fruit fly (Drosophila melanogaster)
      • green algae (Chlamydomonas reinhardtii)
      • honey bee (Apis mellifera)
      • K. lactis yeast (Kluyveromyces lactis)
      • lizard (Anolis carolinensis)
      • loblloly pine (Pinus taeda)
      • malaria parasite (Plasmodium falciparum)
      • medicago trunc (Medicago Truncatula)
      • moss (Physcomitrella patens)
      • oppossum (Monodelphis domestica)
      • orangutan (Pongo pygmaeus)
      • pig (Sus scrofa)
      • platypus (Ornithorhynchus anatinus)
      • rainbow trout (Oncorhynchus mykiss)
      • rice (Oryza sativa)
      • rice blast fungus (Magnaporthe grisea)
      • schistosome parasite (Schistosoma mansoni)
      • sea anemone (Nematostella vectensis)
      • sea squirt (Ciona intestinalis)
      • sea squirt (Ciona savignyi)
      • sea urchin (Strongylocentrotus purpuratus)
      • sorghum (Sorghum bicolor)
      • soybean (Glycine max)
      • stem rust fungus (Puccinia graminis)
      • sugarcane (Saccharum officinarum)
      • thale cress (Arabidopsis thaliana)
      • tomato (Lycopersicon esculentum)
      • toxoplasmosis (Toxoplasma gondii)
      • Trichoplax (Trichoplax adhaerens)
      • tropical clawed frog (Silurana tropicalis)
      • wheat (Triticum aestivum)
      • worm (Caenorhabditis elegans)
      • zebrafish (Danio rerio)

      Evolution for SPATA31D1 Gene

      ENSEMBL:
      Gene Tree for SPATA31D1 (if available)
      TreeFam:
      Gene Tree for SPATA31D1 (if available)

      Paralogs for SPATA31D1 Gene

      Paralogs for SPATA31D1 Gene

      (2) SIMAP similar genes for SPATA31D1 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with SPATA31D1: view

      Variants for SPATA31D1 Gene

      Variation tolerance for SPATA31D1 Gene

      Residual Variation Intolerance Score: 86.74% of all genes are more intolerant (likely to be disease-causing)
      Gene Damage Index Score: 4.86; 67.36% of all genes are more intolerant (likely to be disease-causing)

      Relevant External Links for SPATA31D1 Gene

      HapMap Linkage Disequilibrium report
      SPATA31D1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SPATA31D1 Gene

      Disorders for SPATA31D1 Gene

      Relevant External Links for SPATA31D1

      Atlas of Genetics and Cytogenetics in Oncology and Haematology:
      SPATA31D1
      genes like me logo Genes that share disorders with SPATA31D1: view

      No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA31D1 Gene

      Publications for SPATA31D1 Gene

      1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67

      Products for SPATA31D1 Gene

      Sources for SPATA31D1 Gene

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