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Aliases for SPATA31D1 Gene

Aliases for SPATA31D1 Gene

  • SPATA31 Subfamily D, Member 1 2 3
  • Family With Sequence Similarity 75, Member D1 2 3
  • Protein FAM75D1 3 4
  • FAM75D1 3 4
  • Spermatogenesis-Associated Protein 31D1 3
  • FAM75-Like Protein FLJ46321 3

External Ids for SPATA31D1 Gene

Previous HGNC Symbols for SPATA31D1 Gene

  • FAM75D1

Previous GeneCards Identifiers for SPATA31D1 Gene

  • GC09P084624
  • GC09P084630
  • GC09P084636

Summaries for SPATA31D1 Gene

GeneCards Summary for SPATA31D1 Gene

SPATA31D1 (SPATA31 Subfamily D, Member 1) is a Protein Coding gene. An important paralog of this gene is SPATA31A1.

UniProtKB/Swiss-Prot for SPATA31D1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31D1 Gene

Genomics for SPATA31D1 Gene

Genomic Location for SPATA31D1 Gene

Start:
81,988,772 bp from pter
End:
81,995,256 bp from pter
Size:
6,485 bases
Orientation:
Plus strand

Genomic View for SPATA31D1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31D1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31D1 Gene

No data available for Regulatory Elements for SPATA31D1 Gene

Proteins for SPATA31D1 Gene

  • Protein details for SPATA31D1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZQQ2-S31D1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31D1
    Protein Accession:
    Q6ZQQ2
    Secondary Accessions:

    Protein attributes for SPATA31D1 Gene

    Size:
    1576 amino acids
    Molecular mass:
    175618 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPATA31D1 Gene

Proteomics data for SPATA31D1 Gene at MOPED

Post-translational modifications for SPATA31D1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31D1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31D1 Gene

Domains for SPATA31D1 Gene

Protein Domains for SPATA31D1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q6ZQQ2

UniProtKB/Swiss-Prot:

S31D1_HUMAN :
  • Q6ZQQ2
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31D1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31D1 Gene

Function for SPATA31D1 Gene

Molecular function for SPATA31D1 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31D1 Gene

Localization for SPATA31D1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31D1 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31D1: view

No data available for Subcellular locations from COMPARTMENTS for SPATA31D1 Gene

Pathways for SPATA31D1 Gene

SuperPathways for SPATA31D1 Gene

No Data Available

Interacting Proteins for SPATA31D1 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000341988%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000341988 for SPATA31D1 Gene via STRING

Symbol External ID(s) Details
UBC

Gene Ontology (GO) - Biological Process for SPATA31D1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31D1: view

No data available for Pathways by source for SPATA31D1 Gene

Transcripts for SPATA31D1 Gene

mRNA/cDNA for SPATA31D1 Gene

(10) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31D1 Gene

SPATA31 subfamily D, member 1:
Representative Sequences:

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31D1
    • Block miRNA regulation of SPATA31D1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31D1

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPATA31D1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31D1 Gene

    No ASD Table

    Relevant External Links for SPATA31D1 Gene

    GeneLoc Exon Structure for
    SPATA31D1
    ECgene alternative splicing isoforms for
    SPATA31D1

    Expression for SPATA31D1 Gene

    mRNA expression in normal human tissues for SPATA31D1 Gene

    mRNA differential expression in normal tissues according to GTEx for SPATA31D1 Gene

    This gene is overexpressed in Testis (51.4).

    Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SPATA31D1 Gene

    SOURCE GeneReport for Unigene cluster for SPATA31D1 Gene Hs.209545

    genes like me logo Genes that share expressions with SPATA31D1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31D1 Gene

    Orthologs for SPATA31D1 Gene

    This gene was present in the common ancestor of mammals.

    Orthologs for SPATA31D1 Gene

    Organism Taxonomy Gene Similarity Type Details
    chimpanzee
    (Pan troglodytes)
    Mammalia LOC100609070 35
    • 95.43 (n)
    • 91.52 (a)
    SPATA31D1 36
    • 97 (a)
    OneToOne
    cow
    (Bos Taurus)
    Mammalia LOC782251 35
    • 72.3 (n)
    • 54.67 (a)
    SPATA31D1 36
    • 53 (a)
    OneToOne
    dog
    (Canis familiaris)
    Mammalia -- 36
    • 48 (a)
    OneToMany
    -- 36
    • 49 (a)
    OneToMany
    FAM75D1 35
    • 68.94 (n)
    • 51.73 (a)
    mouse
    (Mus musculus)
    Mammalia Spata31d1a 35
    • 57 (n)
    • 37.07 (a)
    Spata31d1a 36
    • 32 (a)
    OneToMany
    Spata31d1b 36
    • 31 (a)
    OneToMany
    Spata31d1c 36
    • 35 (a)
    OneToMany
    Spata31d1d 36
    • 31 (a)
    OneToMany
    rat
    (Rattus norvegicus)
    Mammalia Spata31d3 35
    • 56.49 (n)
    • 36.96 (a)
    Species with no ortholog for SPATA31D1:
    • A. gosspyii yeast (Ashbya gossypii)
    • Actinobacteria (Mycobacterium tuberculosis)
    • African clawed frog (Xenopus laevis)
    • African malaria mosquito (Anopheles gambiae)
    • Alicante grape (Vitis vinifera)
    • alpha proteobacteria (Wolbachia pipientis)
    • amoeba (Dictyostelium discoideum)
    • Archea (Pyrococcus horikoshii)
    • baker's yeast (Saccharomyces cerevisiae)
    • barley (Hordeum vulgare)
    • beta proteobacteria (Neisseria meningitidis)
    • bread mold (Neurospora crassa)
    • chicken (Gallus gallus)
    • Chromalveolata (Phytophthora infestans)
    • common water flea (Daphnia pulex)
    • corn (Zea mays)
    • E. coli (Escherichia coli)
    • filamentous fungi (Aspergillus nidulans)
    • Firmicute bacteria (Streptococcus pneumoniae)
    • fission yeast (Schizosaccharomyces pombe)
    • fruit fly (Drosophila melanogaster)
    • green algae (Chlamydomonas reinhardtii)
    • honey bee (Apis mellifera)
    • K. lactis yeast (Kluyveromyces lactis)
    • lizard (Anolis carolinensis)
    • loblloly pine (Pinus taeda)
    • malaria parasite (Plasmodium falciparum)
    • medicago trunc (Medicago Truncatula)
    • moss (Physcomitrella patens)
    • oppossum (Monodelphis domestica)
    • orangutan (Pongo pygmaeus)
    • pig (Sus scrofa)
    • platypus (Ornithorhynchus anatinus)
    • rainbow trout (Oncorhynchus mykiss)
    • rice (Oryza sativa)
    • rice blast fungus (Magnaporthe grisea)
    • schistosome parasite (Schistosoma mansoni)
    • sea anemone (Nematostella vectensis)
    • sea squirt (Ciona intestinalis)
    • sea squirt (Ciona savignyi)
    • sea urchin (Strongylocentrotus purpuratus)
    • sorghum (Sorghum bicolor)
    • soybean (Glycine max)
    • stem rust fungus (Puccinia graminis)
    • sugarcane (Saccharum officinarum)
    • thale cress (Arabidopsis thaliana)
    • tomato (Lycopersicon esculentum)
    • toxoplasmosis (Toxoplasma gondii)
    • Trichoplax (Trichoplax adhaerens)
    • tropical clawed frog (Silurana tropicalis)
    • wheat (Triticum aestivum)
    • worm (Caenorhabditis elegans)
    • zebrafish (Danio rerio)

    Evolution for SPATA31D1 Gene

    ENSEMBL:
    Gene Tree for SPATA31D1 (if available)
    TreeFam:
    Gene Tree for SPATA31D1 (if available)

    Paralogs for SPATA31D1 Gene

    Paralogs for SPATA31D1 Gene

    Selected SIMAP similar genes for SPATA31D1 Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with SPATA31D1: view

    Variants for SPATA31D1 Gene

    Sequence variations from dbSNP and Humsavar for SPATA31D1 Gene

    SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
    rs1999661 -- 81,988,104(+) GAAAG(C/T)CAGCA upstream-variant-2KB
    rs3202949 -- 81,995,244(+) ATGTT(A/C)CAATA utr-variant-3-prime
    rs7019488 -- 81,995,686(+) TTTGG(A/G)ATATT downstream-variant-500B
    rs10118455 -- 81,990,378(+) GAGCC(A/G)TGTGC intron-variant
    rs10867826 -- 81,992,843(+) GAGAC(A/T)TCTTC synonymous-codon, reference

    Relevant External Links for SPATA31D1 Gene

    HapMap Linkage Disequilibrium report
    SPATA31D1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA31D1 Gene

    Disorders for SPATA31D1 Gene

    No disorders were found for SPATA31D1 Gene.

    No data available for UniProtKB/Swiss-Prot for SPATA31D1 Gene

    Publications for SPATA31D1 Gene

    1. Activity-based chemical proteomics accelerates inhibitor development for deubiquitylating enzymes. (PMID: 22118674) Altun M. … Kessler B.M. (Chem. Biol. 2011) 3
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4

    Products for SPATA31D1 Gene

    Sources for SPATA31D1 Gene

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