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Aliases for SPATA31C1 Gene

Aliases for SPATA31C1 Gene

  • SPATA31 Subfamily C, Member 1 2 3
  • Family With Sequence Similarity 75, Member C1 2 3
  • FAM75C1 3 4
  • Spermatogenesis-Associated Protein 31C2 3
  • Spermatogenesis-Associated Protein 31C1 3
  • Protein FAM75C1 4
  • SPATA31C2 3

External Ids for SPATA31C1 Gene

Previous Symbols for SPATA31C1 Gene

  • FAM75C1

Summaries for SPATA31C1 Gene

GeneCards Summary for SPATA31C1 Gene

SPATA31C1 (SPATA31 Subfamily C, Member 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SPATA31C1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31C1 Gene

Genomics for SPATA31C1 Gene

Genomic Location for SPATA31C1 Gene

Start:
87,914,493 bp from pter
End:
87,923,657 bp from pter
Size:
9,165 bases
Orientation:
Plus strand

Genomic View for SPATA31C1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31C1 Gene

No data available for Regulatory Elements for SPATA31C1 Gene

Proteins for SPATA31C1 Gene

  • Protein details for SPATA31C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DKV0-S31C1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31C1
    Protein Accession:
    P0DKV0
    Secondary Accessions:

    Protein attributes for SPATA31C1 Gene

    Size:
    1188 amino acids
    Molecular mass:
    130522 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA31C1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA31C1 Gene

Proteomics data for SPATA31C1 Gene at MOPED

Post-translational modifications for SPATA31C1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31C1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31C1 Gene

Domains for SPATA31C1 Gene

Protein Domains for SPATA31C1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

S31C1_HUMAN
Family:
  • Belongs to the SPATA31 family.:
    • P0DKV0
genes like me logo Genes that share domains with SPATA31C1: view

No data available for Gene Families for SPATA31C1 Gene

Function for SPATA31C1 Gene

Molecular function for SPATA31C1 Gene

UniProtKB/Swiss-Prot Function: May play a role in spermatogenesis.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31C1 Gene

Localization for SPATA31C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31C1 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SPATA31C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SPATA31C1: view

Pathways for SPATA31C1 Gene

SuperPathways for SPATA31C1 Gene

No Data Available

Interacting Proteins for SPATA31C1 Gene

Gene Ontology (GO) - Biological Process for SPATA31C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with SPATA31C1: view

No data available for Pathways by source for SPATA31C1 Gene

Transcripts for SPATA31C1 Gene

mRNA/cDNA for SPATA31C1 Gene

(5) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31C1 Gene

SPATA31 subfamily C, member 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31C1 Gene

No ASD Table

Relevant External Links for SPATA31C1 Gene

GeneLoc Exon Structure for
SPATA31C1
ECgene alternative splicing isoforms for
SPATA31C1

Expression for SPATA31C1 Gene

mRNA expression in normal human tissues for SPATA31C1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31C1 Gene

This gene is overexpressed in Testis (46.7).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA31C1 Gene

SOURCE GeneReport for Unigene cluster for SPATA31C1 Gene Hs.652956

genes like me logo Genes that share expressions with SPATA31C1: view

Orthologs for SPATA31C1 Gene

Evolution for SPATA31C1 Gene

ENSEMBL:
Gene Tree for SPATA31C1 (if available)
TreeFam:
Gene Tree for SPATA31C1 (if available)

No data available for Orthologs for SPATA31C1 Gene

Paralogs for SPATA31C1 Gene

Selected SIMAP similar genes for SPATA31C1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATA31C1: view

No data available for Paralogs for SPATA31C1 Gene

Variants for SPATA31C1 Gene

Sequence variations from dbSNP and Humsavar for SPATA31C1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs479015 -- 87,920,867(+) GACAC(C/T)ACAAT reference, synonymous-codon
rs479917 -- 87,920,955(+) AATTC(C/T)GGCCC reference, missense
rs512437 -- 87,922,941(-) GCTTA(C/T)TGAAG reference, missense
rs529617 -- 87,919,022(-) gaggc(C/T)gaggc intron-variant
rs529743 -- 87,918,978(-) AGCCT(A/G)GCCAT intron-variant

Relevant External Links for SPATA31C1 Gene

HapMap Linkage Disequilibrium report
SPATA31C1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SPATA31C1 Gene

Disorders for SPATA31C1 Gene

No disorders were found for SPATA31C1 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA31C1 Gene

Publications for SPATA31C1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4

Products for SPATA31C1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31C1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31C1
    • Block miRNA regulation of SPATA31C1 using miScript Target Protectors

    Sources for SPATA31C1 Gene

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