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Aliases for SPATA31C1 Gene

Aliases for SPATA31C1 Gene

  • SPATA31 Subfamily C, Member 1 2 3 5
  • Family With Sequence Similarity 75, Member C1 2 3
  • FAM75C1 3 4
  • Spermatogenesis-Associated Protein 31C2 3
  • Protein FAM75C1 4
  • SPATA31C2 3

External Ids for SPATA31C1 Gene

Previous HGNC Symbols for SPATA31C1 Gene

  • FAM75C1

Previous GeneCards Identifiers for SPATA31C1 Gene

  • GC09P090529

Summaries for SPATA31C1 Gene

GeneCards Summary for SPATA31C1 Gene

SPATA31C1 (SPATA31 Subfamily C, Member 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SPATA31C1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31C1 Gene

Genomics for SPATA31C1 Gene

Genomic Location for SPATA31C1 Gene

Chromosome:
9
Start:
87,913,936 bp from pter
End:
87,923,657 bp from pter
Size:
9,722 bases
Orientation:
Plus strand

Genomic View for SPATA31C1 Gene

Genes around SPATA31C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA31C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA31C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31C1 Gene

No data available for Regulatory Elements for SPATA31C1 Gene

Proteins for SPATA31C1 Gene

  • Protein details for SPATA31C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DKV0-S31C1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31C1
    Protein Accession:
    P0DKV0

    Protein attributes for SPATA31C1 Gene

    Size:
    1188 amino acids
    Molecular mass:
    130522 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA31C1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA31C1 Gene

Proteomics data for SPATA31C1 Gene at MOPED

Post-translational modifications for SPATA31C1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31C1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31C1 Gene

Domains & Families for SPATA31C1 Gene

Protein Domains for SPATA31C1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0DKV0

UniProtKB/Swiss-Prot:

S31C1_HUMAN :
  • Belongs to the SPATA31 family.
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31C1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31C1 Gene

Function for SPATA31C1 Gene

Molecular function for SPATA31C1 Gene

UniProtKB/Swiss-Prot Function:
May play a role in spermatogenesis.

Phenotypes for SPATA31C1 Gene

GenomeRNAi human phenotypes for SPATA31C1:
genes like me logo Genes that share phenotypes with SPATA31C1: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA31C1 Gene

Localization for SPATA31C1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPATA31C1 Gene

Membrane; Single-pass membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA31C1 Gene

Pathways & Interactions for SPATA31C1 Gene

SuperPathways for SPATA31C1 Gene

No Data Available

Interacting Proteins for SPATA31C1 Gene

Gene Ontology (GO) - Biological Process for SPATA31C1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA31C1 Gene

Drugs & Compounds for SPATA31C1 Gene

No Compound Related Data Available

Transcripts for SPATA31C1 Gene

mRNA/cDNA for SPATA31C1 Gene

(5) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA31C1 Gene

SPATA31 subfamily C, member 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31C1 Gene

No ASD Table

Relevant External Links for SPATA31C1 Gene

GeneLoc Exon Structure for
SPATA31C1
ECgene alternative splicing isoforms for
SPATA31C1

Expression for SPATA31C1 Gene

mRNA expression in normal human tissues for SPATA31C1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA31C1 Gene

This gene is overexpressed in Testis (x46.7).

Protein differential expression in normal tissues from HIPED for SPATA31C1 Gene

This gene is overexpressed in Pancreatic juice (37.2) and Platelet (31.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SPATA31C1 Gene



SOURCE GeneReport for Unigene cluster for SPATA31C1 Gene Hs.652956

genes like me logo Genes that share expression patterns with SPATA31C1: view

Protein tissue co-expression partners for SPATA31C1 Gene

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31C1 Gene

Orthologs for SPATA31C1 Gene

Evolution for SPATA31C1 Gene

ENSEMBL:
Gene Tree for SPATA31C1 (if available)
TreeFam:
Gene Tree for SPATA31C1 (if available)

No data available for Orthologs for SPATA31C1 Gene

Paralogs for SPATA31C1 Gene

(11) SIMAP similar genes for SPATA31C1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPATA31C1: view

No data available for Paralogs for SPATA31C1 Gene

Variants for SPATA31C1 Gene

Sequence variations from dbSNP and Humsavar for SPATA31C1 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs512327 -- 87,922,977(+) TTTTT(A/C/G)AGACG reference, missense
rs512437 -- 87,922,941(-) GCTTA(C/T)TGAAG reference, missense
rs611152 -- 87,913,467(-) ctcac(G/T)gcaac upstream-variant-2KB
rs612348 -- 87,921,797(-) TTCCT(A/G)CTTTT reference, synonymous-codon
rs612703 -- 87,921,752(-) TTGGA(G/T)ACGGG reference, synonymous-codon

Relevant External Links for SPATA31C1 Gene

HapMap Linkage Disequilibrium report
SPATA31C1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA31C1 Gene

Disorders for SPATA31C1 Gene

Relevant External Links for SPATA31C1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA31C1

No disorders were found for SPATA31C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA31C1 Gene

Publications for SPATA31C1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SPATA31C1 Gene

Sources for SPATA31C1 Gene

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