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Aliases for SPATA31C1 Gene

Aliases for SPATA31C1 Gene

  • SPATA31 Subfamily C, Member 1 2 3
  • Family With Sequence Similarity 75, Member C1 2 3
  • FAM75C1 3 4
  • Spermatogenesis-Associated Protein 31C2 3
  • Spermatogenesis-Associated Protein 31C1 3
  • Protein FAM75C1 4
  • SPATA31C2 3

External Ids for SPATA31C1 Gene

Previous HGNC Symbols for SPATA31C1 Gene

  • FAM75C1

Previous GeneCards Identifiers for SPATA31C1 Gene

  • GC09P090529

Summaries for SPATA31C1 Gene

GeneCards Summary for SPATA31C1 Gene

SPATA31C1 (SPATA31 Subfamily C, Member 1) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SPATA31C1 Gene

  • May play a role in spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA31C1 Gene

Genomics for SPATA31C1 Gene

Genomic Location for SPATA31C1 Gene

Start:
87,914,493 bp from pter
End:
87,923,657 bp from pter
Size:
9,165 bases
Orientation:
Plus strand

Genomic View for SPATA31C1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA31C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA31C1 Gene

No data available for Regulatory Elements for SPATA31C1 Gene

Proteins for SPATA31C1 Gene

  • Protein details for SPATA31C1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DKV0-S31C1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 31C1
    Protein Accession:
    P0DKV0
    Secondary Accessions:

    Protein attributes for SPATA31C1 Gene

    Size:
    1188 amino acids
    Molecular mass:
    130522 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA31C1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA31C1 Gene

Proteomics data for SPATA31C1 Gene at MOPED

Post-translational modifications for SPATA31C1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA31C1 Gene

REFSEQ proteins:

No data available for DME Specific Peptides for SPATA31C1 Gene

Domains for SPATA31C1 Gene

Protein Domains for SPATA31C1 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

P0DKV0

UniProtKB/Swiss-Prot:

S31C1_HUMAN :
  • P0DKV0
Family:
  • Belongs to the SPATA31 family.
genes like me logo Genes that share domains with SPATA31C1: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPATA31C1 Gene

Function for SPATA31C1 Gene

Molecular function for SPATA31C1 Gene

UniProtKB/Swiss-Prot Function:
May play a role in spermatogenesis.

Animal Model Products

CRISPR Products

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31C1
    • Block miRNA regulation of SPATA31C1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31C1

    In Situ Assay Products

    Flow Cytometry Products

    No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA31C1 Gene

    Localization for SPATA31C1 Gene

    Subcellular locations from UniProtKB/Swiss-Prot for SPATA31C1 Gene

    Membrane; Single-pass membrane protein.

    Gene Ontology (GO) - Cellular Components for SPATA31C1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0016021 integral component of membrane IEA --
    genes like me logo Genes that share ontologies with SPATA31C1: view

    No data available for Subcellular locations from COMPARTMENTS for SPATA31C1 Gene

    Pathways for SPATA31C1 Gene

    SuperPathways for SPATA31C1 Gene

    No Data Available

    Interacting Proteins for SPATA31C1 Gene

    Gene Ontology (GO) - Biological Process for SPATA31C1 Gene

    GO ID Qualified GO term Evidence PubMed IDs
    GO:0007283 spermatogenesis IEA --
    GO:0030154 cell differentiation IEA --
    genes like me logo Genes that share ontologies with SPATA31C1: view

    No data available for Pathways by source for SPATA31C1 Gene

    Transcripts for SPATA31C1 Gene

    mRNA/cDNA for SPATA31C1 Gene

    (4) Selected AceView cDNA sequences:
    (1) Additional mRNA sequences :
    (5) REFSEQ mRNAs :
    (2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

    Unigene Clusters for SPATA31C1 Gene

    SPATA31 subfamily C, member 1:
    Representative Sequences:

    CRISPR Products

    miRNA Products

    • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA31C1
      • Block miRNA regulation of SPATA31C1 using miScript Target Protectors

      Inhibitory RNA Products

      • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA31C1

      Primer Products

      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat

      Flow Cytometry Products

      Alternative Splicing Database (ASD) splice patterns (SP) for SPATA31C1 Gene

      No ASD Table

      Relevant External Links for SPATA31C1 Gene

      GeneLoc Exon Structure for
      SPATA31C1
      ECgene alternative splicing isoforms for
      SPATA31C1

      Expression for SPATA31C1 Gene

      mRNA expression in normal human tissues for SPATA31C1 Gene

      mRNA differential expression in normal tissues according to GTEx for SPATA31C1 Gene

      This gene is overexpressed in Testis (46.7).

      Protein differential expression in normal tissues for SPATA31C1 Gene

      This gene is overexpressed in Pancreatic juice (37.2) and Platelet (31.8).

      Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA31C1 Gene

      SOURCE GeneReport for Unigene cluster for SPATA31C1 Gene Hs.652956

      genes like me logo Genes that share expressions with SPATA31C1: view

      Expression partners for SPATA31C1 Gene

      In Situ Assay Products

      No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SPATA31C1 Gene

      Orthologs for SPATA31C1 Gene

      Evolution for SPATA31C1 Gene

      ENSEMBL:
      Gene Tree for SPATA31C1 (if available)
      TreeFam:
      Gene Tree for SPATA31C1 (if available)

      No data available for Orthologs for SPATA31C1 Gene

      Paralogs for SPATA31C1 Gene

      Selected SIMAP similar genes for SPATA31C1 Gene using alignment to 1 proteins:

      genes like me logo Genes that share paralogs with SPATA31C1: view

      No data available for Paralogs for SPATA31C1 Gene

      Variants for SPATA31C1 Gene

      Sequence variations from dbSNP and Humsavar for SPATA31C1 Gene

      SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
      rs479015 -- 87,920,867(+) GACAC(C/T)ACAAT reference, synonymous-codon
      rs479917 -- 87,920,955(+) AATTC(C/T)GGCCC reference, missense
      rs512437 -- 87,922,941(-) GCTTA(C/T)TGAAG reference, missense
      rs529617 -- 87,919,022(-) gaggc(C/T)gaggc intron-variant
      rs529743 -- 87,918,978(-) AGCCT(A/G)GCCAT intron-variant

      Relevant External Links for SPATA31C1 Gene

      HapMap Linkage Disequilibrium report
      SPATA31C1

      No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA31C1 Gene

      Disorders for SPATA31C1 Gene

      No disorders were found for SPATA31C1 Gene.

      No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SPATA31C1 Gene

      Publications for SPATA31C1 Gene

      1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
      2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
      3. DNA sequence and analysis of human chromosome 9. (PMID: 15164053) Humphray S.J. … Dunham I. (Nature 2004) 4

      Products for SPATA31C1 Gene

      Sources for SPATA31C1 Gene

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