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Aliases for SPATA3-AS1 Gene

Subcategory (RNA class) for SPATA3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SPATA3-AS1 Gene

  • SPATA3 Antisense RNA 1 (Head To Head) 2 3

External Ids for SPATA3-AS1 Gene

ORGUL Members for SPATA3-AS1 Gene

Summaries for SPATA3-AS1 Gene

GeneCards Summary for SPATA3-AS1 Gene

SPATA3-AS1 (SPATA3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and belongs to the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA3-AS1 Gene

Genomics for SPATA3-AS1 Gene

Genomic Location for SPATA3-AS1 Gene

Start:
230,984,368 bp from pter
End:
230,996,032 bp from pter
Size:
11,665 bases
Orientation:
Minus strand

Genomic View for SPATA3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA3-AS1 Gene

No data available for Regulatory Elements for SPATA3-AS1 Gene

Proteins for SPATA3-AS1 Gene

Post-translational modifications for SPATA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA3-AS1 Gene

Domains for SPATA3-AS1 Gene

Gene Families for SPATA3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPATA3-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA3-AS1 Gene

Function for SPATA3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA3-AS1 Gene

Localization for SPATA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA3-AS1 Gene

Pathways for SPATA3-AS1 Gene

SuperPathways for SPATA3-AS1 Gene

No Data Available

Interacting Proteins for SPATA3-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA3-AS1 Gene

None

No data available for Pathways by source for SPATA3-AS1 Gene

Transcripts for SPATA3-AS1 Gene

mRNA/cDNA for SPATA3-AS1 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA3-AS1 Gene

No ASD Table

Relevant External Links for SPATA3-AS1 Gene

GeneLoc Exon Structure for
SPATA3-AS1
ECgene alternative splicing isoforms for
SPATA3-AS1

Expression for SPATA3-AS1 Gene

mRNA expression in normal human tissues for SPATA3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA3-AS1 Gene

This gene is overexpressed in Testis (39.7).
genes like me logo Genes that share expressions with SPATA3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SPATA3-AS1 Gene

Orthologs for SPATA3-AS1 Gene

Evolution for SPATA3-AS1 Gene

ENSEMBL:
Gene Tree for SPATA3-AS1 (if available)
TreeFam:
Gene Tree for SPATA3-AS1 (if available)

No data available for Orthologs for SPATA3-AS1 Gene

Paralogs for SPATA3-AS1 Gene

No data available for Paralogs for SPATA3-AS1 Gene

Variants for SPATA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs906878 -- 230,991,219(-) GACTC(C/G)GGGGC intron-variant
rs953760 -- 230,986,557(+) CTTCC(C/T)TGCCC intron-variant
rs1060780 -- 230,987,679(-) CAGGA(C/T)ACAGT nc-transcript-variant
rs2368999 -- 230,991,328(-) AACAC(C/T)TCTGA intron-variant
rs2369000 -- 230,985,906(-) CTTAC(C/T)GGCCT nc-transcript-variant

Relevant External Links for SPATA3-AS1 Gene

HapMap Linkage Disequilibrium report
SPATA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA3-AS1 Gene

Disorders for SPATA3-AS1 Gene

No disorders were found for SPATA3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA3-AS1 Gene

Publications for SPATA3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3

Products for SPATA3-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPATA3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPATA3-AS1
    • Block miRNA regulation of SPATA3-AS1 using miScript Target Protectors

    Sources for SPATA3-AS1 Gene

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