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Aliases for SPATA3-AS1 Gene

Subcategory (RNA class) for SPATA3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA3-AS1 Gene

  • SPATA3 Antisense RNA 1 (Head To Head) 2 3 5

External Ids for SPATA3-AS1 Gene

Previous GeneCards Identifiers for SPATA3-AS1 Gene

  • GC02M231851

Summaries for SPATA3-AS1 Gene

GeneCards Summary for SPATA3-AS1 Gene

SPATA3-AS1 (SPATA3 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA3-AS1 Gene

Genomics for SPATA3-AS1 Gene

Regulatory Elements for SPATA3-AS1 Gene

Enhancers for SPATA3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F230973 1.4 FANTOM5 Ensembl ENCODE 13 +21.7 21726 2.3 HDGF TBP PKNOX1 TBL1XR1 WRNIP1 BMI1 ETV6 CREM SMAD5 CBFB SPATA3 SPATA3-AS1 ENSG00000230385 C2orf72 PSMD1 GPR55
GH02F230922 1.4 FANTOM5 Ensembl ENCODE 12.1 +71.2 71229 3.9 HDGF TBP PKNOX1 TBL1XR1 SIN3A BMI1 RAD21 RFX5 GLIS2 EGR1 GPR55 SPATA3 SPATA3-AS1 LOC151484 PSMD1 ENSG00000283164 GC02M230912
GH02F230792 1.6 FANTOM5 Ensembl ENCODE 10.3 +200.4 200366 6.3 HDGF ATF1 PKNOX1 CREB3L1 SIN3A ZNF48 YY1 ELK1 ZNF143 ZNF207 CAB39 TRIP12 SP100 RNU6-268P SPATA3 SPATA3-AS1 SP140L GC02P230779 ENSG00000270891
GH02F230863 1.3 Ensembl ENCODE 11.4 +126.4 126421 11.3 PKNOX1 ARID4B DMAP1 ZNF48 GLIS2 ELK1 ZNF143 SP3 TSHZ1 REST ENSG00000230385 SPATA3 SPATA3-AS1 PSMD1 ITM2C LOC151484
GH02F230847 1.2 Ensembl ENCODE 12.1 +147.9 147931 0.6 ARID4B DMAP1 ZNF48 ZNF143 FOS JUNB MXD4 MIER2 REST KAT8 LOC151484 SPATA3 SPATA3-AS1 ENSG00000230385 PSMD1 C2orf72 ENSG00000270891 ITM2C
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA3-AS1 Gene

Chromosome:
2
Start:
230,984,368 bp from pter
End:
230,996,032 bp from pter
Size:
11,665 bases
Orientation:
Minus strand

Genomic View for SPATA3-AS1 Gene

Genes around SPATA3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA3-AS1 Gene

Proteins for SPATA3-AS1 Gene

Post-translational modifications for SPATA3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA3-AS1 Gene

Domains & Families for SPATA3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA3-AS1 Gene

Function for SPATA3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA3-AS1 Gene

Localization for SPATA3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA3-AS1 Gene

Pathways & Interactions for SPATA3-AS1 Gene

SuperPathways for SPATA3-AS1 Gene

No Data Available

Interacting Proteins for SPATA3-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA3-AS1 Gene

Transcripts for SPATA3-AS1 Gene

mRNA/cDNA for SPATA3-AS1 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA3-AS1 Gene

No ASD Table

Relevant External Links for SPATA3-AS1 Gene

GeneLoc Exon Structure for
SPATA3-AS1
ECgene alternative splicing isoforms for
SPATA3-AS1

Expression for SPATA3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA3-AS1 Gene

This gene is overexpressed in Testis (x39.7).
genes like me logo Genes that share expression patterns with SPATA3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA3-AS1 Gene

Orthologs for SPATA3-AS1 Gene

Evolution for SPATA3-AS1 Gene

ENSEMBL:
Gene Tree for SPATA3-AS1 (if available)
TreeFam:
Gene Tree for SPATA3-AS1 (if available)

No data available for Orthologs for SPATA3-AS1 Gene

Paralogs for SPATA3-AS1 Gene

No data available for Paralogs for SPATA3-AS1 Gene

Variants for SPATA3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA3-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10195689 -- 230,985,064(+) CCACC(C/T)TCAAA nc-transcript-variant
rs10196200 -- 230,985,525(+) TGCTG(C/T)CACCA nc-transcript-variant
rs1060780 -- 230,987,679(-) CAGGA(C/T)ACAGT nc-transcript-variant
rs1061408 -- 230,995,903(-) TGCTT(C/T)TGCGA nc-transcript-variant, upstream-variant-2KB
rs10737943 -- 230,997,991(+) CCTGA(A/G)AAGGG intron-variant, upstream-variant-2KB

Relevant External Links for SPATA3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA3-AS1 Gene

Disorders for SPATA3-AS1 Gene

Relevant External Links for SPATA3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA3-AS1

No disorders were found for SPATA3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA3-AS1 Gene

Publications for SPATA3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64

Products for SPATA3-AS1 Gene

Sources for SPATA3-AS1 Gene

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