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Aliases for SPATA2L Gene

Aliases for SPATA2L Gene

  • Spermatogenesis Associated 2-Like 2 3
  • SPATA2-Like Protein 3 4
  • C16orf76 3 4
  • Spermatogenesis-Associated Protein 2-Like Protein 3
  • Chromosome 16 Open Reading Frame 76 2
  • Tamo 3

External Ids for SPATA2L Gene

Previous HGNC Symbols for SPATA2L Gene

  • C16orf76

Previous GeneCards Identifiers for SPATA2L Gene

  • GC16M088292
  • GC16M089762
  • GC16M075458

Summaries for SPATA2L Gene

GeneCards Summary for SPATA2L Gene

SPATA2L (Spermatogenesis Associated 2-Like) is a Protein Coding gene. An important paralog of this gene is SPATA2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA2L Gene

Genomics for SPATA2L Gene

Regulatory Elements for SPATA2L Gene

Genomic Location for SPATA2L Gene

Start:
89,696,343 bp from pter
End:
89,701,718 bp from pter
Size:
5,376 bases
Orientation:
Minus strand

Genomic View for SPATA2L Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA2L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA2L Gene

Proteins for SPATA2L Gene

  • Protein details for SPATA2L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IUW3-SPA2L_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 2-like protein
    Protein Accession:
    Q8IUW3
    Secondary Accessions:
    • D3DX85
    • Q8NHV3

    Protein attributes for SPATA2L Gene

    Size:
    424 amino acids
    Molecular mass:
    46179 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA2L Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA2L Gene

Proteomics data for SPATA2L Gene at MOPED

Post-translational modifications for SPATA2L Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA2L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPATA2L Gene

Domains for SPATA2L Gene

Protein Domains for SPATA2L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPATA2L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8IUW3

UniProtKB/Swiss-Prot:

SPA2L_HUMAN :
  • Q8IUW3
Family:
  • Belongs to the SPATA2 family.
genes like me logo Genes that share domains with SPATA2L: view

No data available for Gene Families for SPATA2L Gene

Function for SPATA2L Gene

genes like me logo Genes that share phenotypes with SPATA2L: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA2L Gene

Localization for SPATA2L Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPATA2L Gene COMPARTMENTS Subcellular localization image for SPATA2L gene
Compartment Confidence
cytosol 2
nucleus 2
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPATA2L Gene

Pathways for SPATA2L Gene

SuperPathways for SPATA2L Gene

No Data Available

Interacting Proteins for SPATA2L Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000289805%0d%0a9606.ENSP00000308928%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000289805 Q8IUW3-SPA2L_HUMAN for SPATA2L Gene via STRING I2D

Gene Ontology (GO) - Biological Process for SPATA2L Gene

None

No data available for Pathways by source for SPATA2L Gene

Transcripts for SPATA2L Gene

mRNA/cDNA for SPATA2L Gene

Unigene Clusters for SPATA2L Gene

Spermatogenesis associated 2-like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA2L Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4a · 4b
SP1: - -
SP2: -
SP3:

Relevant External Links for SPATA2L Gene

GeneLoc Exon Structure for
SPATA2L
ECgene alternative splicing isoforms for
SPATA2L

Expression for SPATA2L Gene

mRNA expression in normal human tissues for SPATA2L Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SPATA2L Gene

SOURCE GeneReport for Unigene cluster for SPATA2L Gene Hs.374556

genes like me logo Genes that share expressions with SPATA2L: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for SPATA2L Gene

Orthologs for SPATA2L Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATA2L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA2L 35
  • 99.06 (n)
  • 99.76 (a)
SPATA2L 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SPATA2L 35
  • 82.52 (n)
  • 83.09 (a)
SPATA2L 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPATA2L 35
  • 82.78 (n)
  • 83.25 (a)
SPATA2L 36
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Spata2l 35
  • 81.4 (n)
  • 86.05 (a)
Spata2l 16
Spata2l 36
  • 84 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SPATA2L 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPATA2L 36
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Spata2L 35
  • 82.82 (n)
  • 86.76 (a)
chicken
(Gallus gallus)
Aves SPATA2L 36
  • 41 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SPATA2L 36
  • 38 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia spata2l 35
  • 43.77 (n)
  • 36.58 (a)
zebrafish
(Danio rerio)
Actinopterygii spata2l 36
  • 13 (a)
OneToOne
Species with no ortholog for SPATA2L:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPATA2L Gene

ENSEMBL:
Gene Tree for SPATA2L (if available)
TreeFam:
Gene Tree for SPATA2L (if available)

Paralogs for SPATA2L Gene

Paralogs for SPATA2L Gene

genes like me logo Genes that share paralogs with SPATA2L: view

Variants for SPATA2L Gene

Sequence variations from dbSNP and Humsavar for SPATA2L Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs154661 -- 89,700,163(-) AGTGC(C/G)GGACA intron-variant
rs396742 -- 89,701,648(-) GGCCG(C/G)AGACC utr-variant-5-prime
rs417414 -- 89,699,740(-) acccc(A/G)tctct intron-variant
rs419151 -- 89,702,242(-) ACGAG(G/T)CTGAA upstream-variant-2KB
rs2437953 -- 89,702,007(-) GCCGG(C/G)TCGCC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPATA2L Gene

Variant ID Type Subtype PubMed ID
nsv428331 CNV Gain+Loss 18775914
dgv3008n71 CNV Loss 21882294
dgv3009n71 CNV Loss 21882294
nsv509639 CNV Insertion 20534489
nsv907420 CNV Loss 21882294
nsv457623 CNV Gain 19166990
nsv907423 CNV Loss 21882294
nsv907424 CNV Loss 21882294
nsv907425 CNV Loss 21882294
nsv833330 CNV Loss 17160897
dgv3012n71 CNV Loss 21882294
nsv516241 CNV Loss 19592680
nsv907429 CNV Loss 21882294

Relevant External Links for SPATA2L Gene

HapMap Linkage Disequilibrium report
SPATA2L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPATA2L Gene

Disorders for SPATA2L Gene

No disorders were found for SPATA2L Gene.

No data available for UniProtKB/Swiss-Prot for SPATA2L Gene

Publications for SPATA2L Gene

  1. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3
  2. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  5. Defining the human deubiquitinating enzyme interaction landscape. (PMID: 19615732) Sowa M.E. … Harper J.W. (Cell 2009) 3

Products for SPATA2L Gene

Sources for SPATA2L Gene

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