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SPATA2L Gene

protein-coding   GIFtS: 41
GCID: GC16M089762

Spermatogenesis Associated 2-Like

(Previous name: chromosome 16 open reading frame 76)
(Previous symbol: C16orf76)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Spermatogenesis Associated 2-Like1 2
C16orf761 2 3
SPATA2-Like Protein2 3
Chromosome 16 Open Reading Frame 761
Spermatogenesis-Associated Protein 2-Like Protein2
tamo2

External Ids:    HGNC: 283931   Entrez Gene: 1240442   Ensembl: ENSG000001587927   UniProtKB: Q8IUW33   

Export aliases for SPATA2L gene to outside databases

Previous GC identifers: GC16M088292 GC16M075458


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPATA2L Gene:
SPATA2L (spermatogenesis associated 2-like) is a protein-coding gene. An important paralog of this gene is SPATA2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000016.9  NT_010498.16  NC_018927.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPATA2L gene promoter:
         AhR   POU2F1   NRF-2   AML1a   CP2   POU2F1a   Olf-1   XBP-1   CUTL1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSPATA2L promoter sequence
   Search Chromatin IP Primers for SPATA2L

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPATA2L


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 16q24.3   Ensembl cytogenetic band:  16q24.3   HGNC cytogenetic band: 16q24.3

SPATA2L Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPATA2L gene location

GeneLoc information about chromosome 16         GeneLoc Exon Structure

GeneLoc location for GC16M089762:  view genomic region     (about GC identifiers)

Start:
89,762,751 bp from pter      End:
89,768,121 bp from pter
Size:
5,371 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SPA2L_HUMAN, Q8IUW3 (See protein sequence)
Recommended Name: Spermatogenesis-associated protein 2-like protein  
Size: 424 amino acids; 46179 Da
Secondary accessions: D3DX85 Q8NHV3
Alternative splicing: 2 isoforms:  Q8IUW3-1   Q8IUW3-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SPATA2L: NX_Q8IUW3

Explore proteomics data for SPATA2L at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See SPATA2L Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_689552.2  
    ENSEMBL proteins: 
     ENSP00000289805   ENSP00000334006   ENSP00000458083  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    ProtoNet protein and cluster: Q8IUW3

    UniProtKB/Swiss-Prot: SPA2L_HUMAN, Q8IUW3
    Similarity: Belongs to the SPATA2 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Phenotypes:
         3 GenomeRNAi human phenotypes for SPATA2L:
     Decreased influenza A/WSN/33 r  Decreased viability of wild-ty  Synthetic lethal with c-Myc af 

    Animal Models:
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    SwitchGear 3'UTR luciferase reporter plasmidSPATA2L 3' UTR sequence
    Inhib. RNA
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    mitochondrion1
    peroxisome1
    plasma membrane1

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SPATA2L
    Interactions:

        Search GeneGlobe Interaction Network for SPATA2L

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for SPATA2L (Q8IUW33 ENSP000002898054) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CYLDQ9NQC73, ENSP000003089284I2D: score=2 STRING: ENSP00000308928
    UBCENSP000003448184STRING: ENSP00000344818
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SPATA2L (SPA2L)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SPATA2L gene: 
    NM_152339.3  

    Unigene Cluster for SPATA2L:

    Spermatogenesis associated 2-like
    Hs.374556  [show with all ESTs]
    Unigene Representative Sequence: NM_152339
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000289805(uc002foj.3) ENST00000335360(uc002fok.3) ENST00000569918

    miRNA
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    4 qRT-PCR Assays for microRNAs that regulate SPATA2L:
    hsa-miR-4253 hsa-miR-29c hsa-miR-29a hsa-miR-29b
    SwitchGear 3'UTR luciferase reporter plasmidSPATA2L 3' UTR sequence
    Inhib. RNA
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      QuantiFast Probe-based Assays in human, mouse, rat SPATA2L

    Additional mRNA sequence: 

    AF070574.1 AK127372.1 BC027606.1 BC039608.1 BC053588.1 

    15 DOTS entries:

    DT.100832847  DT.92413136  DT.120667672  DT.97847205  DT.75149153  DT.97769715  DT.99958417  DT.100705508 
    DT.100837924  DT.86854973  DT.86854975  DT.100816587  DT.453112  DT.95252922  DT.95369535 

    Selected AceView cDNA sequences (see all 52):

    CR602544 BX387118 BX353978 BU849032 BG721575 BQ072915 AK127372 BE793145 
    BM906021 BM273272 BE875800 BG773450 BG394879 BM544766 BC027606 BI917333 
    AF070574 BC039608 BX375464 AL525023 CK819980 NM_152339 BM973644 BX353977 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for SPATA2L    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3a · 3b ^ 4a · 4b
    SP1:                    -                 -               
    SP2:                    -                                 
    SP3:                                                      


    ECgene alternative splicing isoforms for SPATA2L

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SPATA2L expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TGCTGGGTAG
    SPATA2L Expression
    About this image

    SPATA2L Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SPATA2L Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.374556
        Custom PCR Arrays for SPATA2L
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPATA2L

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for SPATA2L gene from Selected species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Spata2l1 , 5 spermatogenesis associated 2-like1, 5 81.4(n)1
    86.05(a)1
      8 (72.09 cM)5
    787791  NM_030176.21  NP_084452.21 
     1232322585 
    chicken
    (Gallus gallus)
    Aves SPATA2L6
    spermatogenesis associated 2-like
    41(a)
    1 ↔ 1
    11(18212172-18213607)
    lizard
    (Anolis carolinensis)
    Reptilia SPATA2L6
    spermatogenesis associated 2-like
    38(a)
    1 ↔ 1
    GL343487.1(634682-636149)
    tropical clawed frog
    (Xenopus tropicalis)
    Amphibia spata2l1 spermatogenesis associated 2-like 43.77(n)
    36.58(a)
      100486570  XM_002933662.2  XP_002933708.2 
    zebrafish
    (Danio rerio)
    Actinopterygii spata2l6
    spermatogenesis associated 2-like
    13(a)
    1 ↔ 1
    18(14270185-14274508) ENSDARG00000068814


    ENSEMBL Gene Tree for SPATA2L (if available)
    TreeFam Gene Tree for SPATA2L (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for SPATA2L gene
    SPATA22  

    Find genes that share paralogs with SPATA2L           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SPATA2L (see all 200)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 16 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs38036901,2
    C,F,A,H--89763359(-) CAGGAG/CTTGGG 1 -- ut3118Minor allele frequency- C:0.45NA NS EA WA CSA 869
    rs1880641771,2
    --89763388(+) GCAGGA/GAGCAG 1 -- ut310--------
    rs760853071,2
    C,F--89763416(+) TTGGGG/ACACAG 1 -- ut311Minor allele frequency- A:0.03WA 118
    rs1926918101,2
    --89763579(+) ATACAA/GAGAGT 1 -- ut310--------
    rs37516961,2
    C,F,A,H--89763619(-) GGGGGA/TTGGAG 1 -- ut31 ese316Minor allele frequency- T:0.41EA NS NA WA CSA 2249
    rs1411391051,2
    --89763659(+) GGCAAC/TCAGAG 1 -- ut310--------
    rs80514331,2
    C,F,H--89763681(+) TCCCCA/GGCAAA 1 -- ut31 ese310Minor allele frequency- G:0.06NS EA NA CSA 1192
    rs1850371671,2
    C--89763757(+) GCCCCA/GGGGCT 2 P syn10--------
    rs2005448571,2
    C--89763791(+) GTGCAC/TGCTGT 2 H R mis10--------
    rs2011864351,2
    C--89763810(+) GCGCCA/GCTGGG 2 R W mis10--------

    HapMap Linkage Disequilibrium report for SPATA2L (89762751 - 89768121 bp)

    Structural Variations
         Database of Genomic Variants (DGV) Selected variations for SPATA2L (see all 13):    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv509639CNV Insertion20534489
    nsv907425CNV Loss21882294
    dgv3009n71CNV Loss21882294
    dgv3012n71CNV Loss21882294
    nsv833330CNV Loss17160897
    nsv907420CNV Loss21882294
    nsv907429CNV Loss21882294
    nsv907424CNV Loss21882294
    nsv907423CNV Loss21882294
    nsv516241CNV Loss19592680

    Site Specific Mutation Identification with PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SPATA2L gene integrated from 10 sources:
    (articles sorted by number of sources associating them with SPATA2L)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A "double adaptor" method for improved shotgun library construction. (PubMed id 8619474)1, 3 Andersson B.... Gibbs R.A. (Anal. Biochem. 1996)
    2. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (Mol. Cell 2011)
    3. Defining the human deubiquitinating enzyme interaction landscape. (PubMed id 19615732)1 Sowa M.E....Harper J.W. (Cell 2009)
    4. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    7. Large-scale concatenation cDNA sequencing. (PubMed id 9110174)1 Yu W.... Gibbs R.A. (Genome Res. 1997)
    8. (PubMed id )2 

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 124044 HGNC: 28393 AceView: MGC26885 Ensembl:ENSG00000158792 euGenes: HUgn124044
    ECgene: SPATA2L H-InvDB: SPATA2L

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SPATA2L Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SPATA2L gene:
    Search GeneIP for patents involving SPATA2L

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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