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Aliases for SPATA21 Gene

Aliases for SPATA21 Gene

  • Spermatogenesis Associated 21 2 3
  • Spermatogenesis-Associated Protein 21 3
  • Spergen-2 3
  • Spergen2 3

External Ids for SPATA21 Gene

Previous GeneCards Identifiers for SPATA21 Gene

  • GC01M016471
  • GC01M016597
  • GC01M016714
  • GC01M015242

Summaries for SPATA21 Gene

GeneCards Summary for SPATA21 Gene

SPATA21 (Spermatogenesis Associated 21) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is EFCAB3.

UniProtKB/Swiss-Prot for SPATA21 Gene

  • Involved in the differentiation of haploid spermatids.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA21 Gene

Genomics for SPATA21 Gene

Regulatory Elements for SPATA21 Gene

Genomic Location for SPATA21 Gene

Start:
16,387,117 bp from pter
End:
16,437,424 bp from pter
Size:
50,308 bases
Orientation:
Minus strand

Genomic View for SPATA21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA21 Gene

Proteins for SPATA21 Gene

  • Protein details for SPATA21 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z572-SPT21_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 21
    Protein Accession:
    Q7Z572
    Secondary Accessions:
    • B9EK40
    • F5GXP5

    Protein attributes for SPATA21 Gene

    Size:
    469 amino acids
    Molecular mass:
    52207 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPATA21 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA21 Gene

Proteomics data for SPATA21 Gene at MOPED

Post-translational modifications for SPATA21 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPATA21 Gene

No data available for DME Specific Peptides for SPATA21 Gene

Domains for SPATA21 Gene

Gene Families for SPATA21 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for SPATA21 Gene

Suggested Antigen Peptide Sequences for SPATA21 Gene

Graphical View of Domain Structure for InterPro Entry

Q7Z572

UniProtKB/Swiss-Prot:

SPT21_HUMAN :
  • Q7Z572
Domain:
  • Contains 1 EF-hand domain.
genes like me logo Genes that share domains with SPATA21: view

Function for SPATA21 Gene

Molecular function for SPATA21 Gene

UniProtKB/Swiss-Prot Function: Involved in the differentiation of haploid spermatids.

Gene Ontology (GO) - Molecular Function for SPATA21 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
genes like me logo Genes that share ontologies with SPATA21: view

Phenotypes for SPATA21 Gene

genes like me logo Genes that share phenotypes with SPATA21: view

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPATA21 Gene

Localization for SPATA21 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPATA21 Gene COMPARTMENTS Subcellular localization image for SPATA21 gene
Compartment Confidence
cytosol 3
extracellular 1
mitochondrion 1
nucleus 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPATA21 Gene

Pathways for SPATA21 Gene

SuperPathways for SPATA21 Gene

No Data Available

Interacting Proteins for SPATA21 Gene

Gene Ontology (GO) - Biological Process for SPATA21 Gene

None

No data available for Pathways by source for SPATA21 Gene

Transcripts for SPATA21 Gene

Unigene Clusters for SPATA21 Gene

Spermatogenesis associated 21:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA21 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
SP1: - - - - - -
SP2: - -
SP3: - - - - - -
SP4:

Relevant External Links for SPATA21 Gene

GeneLoc Exon Structure for
SPATA21
ECgene alternative splicing isoforms for
SPATA21

Expression for SPATA21 Gene

mRNA expression in normal human tissues for SPATA21 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPATA21 Gene

This gene is overexpressed in Testis (28.2), Liver (4.7), Brain - Cerebellum (4.2), and Brain - Cerebellar Hemisphere (4.0).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SPATA21 Gene

SOURCE GeneReport for Unigene cluster for SPATA21 Gene Hs.705501

genes like me logo Genes that share expressions with SPATA21: view

No data available for mRNA Expression by UniProt/SwissProt for SPATA21 Gene

Orthologs for SPATA21 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATA21 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA21 35
  • 99.19 (n)
  • 98.53 (a)
SPATA21 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SPATA21 35
  • 76.33 (n)
  • 63.01 (a)
SPATA21 36
  • 42 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPATA21 35
  • 78.65 (n)
  • 70.77 (a)
SPATA21 36
  • 47 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Spata21 35
  • 75.13 (n)
  • 67.77 (a)
Spata21 16
Spata21 36
  • 45 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SPATA21 36
  • 17 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPATA21 36
  • 27 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Spata21 35
  • 76.5 (n)
  • 68.51 (a)
chicken
(Gallus gallus)
Aves -- 36
  • 16 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 18 (a)
OneToMany
Species with no ortholog for SPATA21:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPATA21 Gene

ENSEMBL:
Gene Tree for SPATA21 (if available)
TreeFam:
Gene Tree for SPATA21 (if available)

Paralogs for SPATA21 Gene

Paralogs for SPATA21 Gene

genes like me logo Genes that share paralogs with SPATA21: view

Variants for SPATA21 Gene

Sequence variations from dbSNP and Humsavar for SPATA21 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs513145 -- 16,404,781(-) ctcag(A/G)ctgag intron-variant
rs525409 - 16,405,015(+) CGTCA(C/G)AGAGA missense, reference, nc-transcript-variant
rs526481 -- 16,405,152(+) TTTCT(C/G)TCATT intron-variant
rs526489 -- 16,405,158(+) TCATT(C/T)ATCCC intron-variant
rs526513 -- 16,405,166(+) CCCAT(C/T)ACCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA21 Gene

Variant ID Type Subtype PubMed ID
nsv829581 CNV Loss 20364138
esv2675247 CNV Deletion 23128226
esv1035588 CNV Insertion 17803354
esv2674598 CNV Deletion 23128226
dgv19n67 CNV Loss 20364138
esv2744408 CNV Deletion 23290073

Relevant External Links for SPATA21 Gene

HapMap Linkage Disequilibrium report
SPATA21
Human Gene Mutation Database (HGMD)
SPATA21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPATA21 Gene

Disorders for SPATA21 Gene

No disorders were found for SPATA21 Gene.

No data available for UniProtKB/Swiss-Prot for SPATA21 Gene

Publications for SPATA21 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Dynamics of cullin-RING ubiquitin ligase network revealed by systematic quantitative proteomics. (PMID: 21145461) Bennett E.J. … Harper J.W. (Cell 2010) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4
  5. The consensus coding sequences of human breast and colorectal cancers. (PMID: 16959974) Sjoeblom T. … Velculescu V.E. (Science 2006) 4

Products for SPATA21 Gene

Sources for SPATA21 Gene

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