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Aliases for SPATA20P1 Gene

Aliases for SPATA20P1 Gene

  • Spermatogenesis Associated 20 Pseudogene 1 2 3 5

External Ids for SPATA20P1 Gene

Previous GeneCards Identifiers for SPATA20P1 Gene

  • GC00U931690
  • GC21M039611
  • GC21M039612
  • GC21M039614
  • GC21M039616
  • GC21M039618

Summaries for SPATA20P1 Gene

GeneCards Summary for SPATA20P1 Gene

SPATA20P1 (Spermatogenesis Associated 20 Pseudogene 1) is a Pseudogene.

Additional gene information for SPATA20P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA20P1 Gene

Genomics for SPATA20P1 Gene

Regulatory Elements for SPATA20P1 Gene

Enhancers for SPATA20P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H038302 1.5 FANTOM5 Ensembl ENCODE dbSUPER 4.9 -64.7 -64678 1 JUN MAX USF2 CEBPB NR3C1 EP300 JUND MAFF POLR2A FOS KCNJ15 SPATA20P1 GC21P038273 GC21M038327
GH21H038257 1.4 FANTOM5 Ensembl ENCODE dbSUPER 5.2 -19.9 -19894 3 FOS BMI1 MAFK KCNJ15 SPATA20P1 LOC105372801
GH21H038244 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.5 -6490 2 BACH1 YBX1 BATF GATA3 ZNF366 FOXK2 FOS ATF7 RUNX3 HES1 DSCR3 KCNJ15 SPATA20P1 LOC105372801
GH21H038239 0.9 Ensembl ENCODE dbSUPER 0.7 -2.8 -2790 3 SCRT1 SCRT2 KCNJ15 SPATA20P1 LOC105372801
GH21H038246 0.8 FANTOM5 dbSUPER 0.4 -8.1 -8113 0 ZNF114 ZNF366 KCNJ15 SPATA20P1 LOC105372801
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA20P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA20P1 Gene

Chromosome:
21
Start:
38,238,227 bp from pter
End:
38,238,664 bp from pter
Size:
438 bases
Orientation:
Minus strand

Genomic View for SPATA20P1 Gene

Genes around SPATA20P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA20P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA20P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA20P1 Gene

Proteins for SPATA20P1 Gene

Post-translational modifications for SPATA20P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA20P1 Gene

Domains & Families for SPATA20P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA20P1 Gene

Function for SPATA20P1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPATA20P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA20P1 Gene

Localization for SPATA20P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA20P1 Gene

Pathways & Interactions for SPATA20P1 Gene

SuperPathways for SPATA20P1 Gene

No Data Available

Interacting Proteins for SPATA20P1 Gene

Gene Ontology (GO) - Biological Process for SPATA20P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA20P1 Gene

Drugs & Compounds for SPATA20P1 Gene

No Compound Related Data Available

Transcripts for SPATA20P1 Gene

mRNA/cDNA for SPATA20P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPATA20P1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA20P1 Gene

No ASD Table

Relevant External Links for SPATA20P1 Gene

GeneLoc Exon Structure for
SPATA20P1
ECgene alternative splicing isoforms for
SPATA20P1

Expression for SPATA20P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA20P1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA20P1 Gene

This gene is overexpressed in Whole Blood (x25.9).

NURSA nuclear receptor signaling pathways regulating expression of SPATA20P1 Gene:

SPATA20P1
genes like me logo Genes that share expression patterns with SPATA20P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA20P1 Gene

Orthologs for SPATA20P1 Gene

Evolution for SPATA20P1 Gene

ENSEMBL:
Gene Tree for SPATA20P1 (if available)
TreeFam:
Gene Tree for SPATA20P1 (if available)

No data available for Orthologs for SPATA20P1 Gene

Paralogs for SPATA20P1 Gene

No data available for Paralogs for SPATA20P1 Gene

Variants for SPATA20P1 Gene

Relevant External Links for SPATA20P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA20P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA20P1 Gene

Disorders for SPATA20P1 Gene

No disorders were found for SPATA20P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPATA20P1 Gene

Publications for SPATA20P1 Gene

No publications were found for SPATA20P1 Gene.

Products for SPATA20P1 Gene

Sources for SPATA20P1 Gene

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