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Aliases for SPATA20P1 Gene

Aliases for SPATA20P1 Gene

  • Spermatogenesis Associated 20 Pseudogene 1 2 3 5

External Ids for SPATA20P1 Gene

Previous GeneCards Identifiers for SPATA20P1 Gene

  • GC00U931690
  • GC21M039611
  • GC21M039612
  • GC21M039614
  • GC21M039616
  • GC21M039618

Summaries for SPATA20P1 Gene

GeneCards Summary for SPATA20P1 Gene

SPATA20P1 (Spermatogenesis Associated 20 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA20P1 Gene

Genomics for SPATA20P1 Gene

Regulatory Elements for SPATA20P1 Gene

Enhancers for SPATA20P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21F038285 1.6 FANTOM5 Ensembl ENCODE 5 -51.4 -51443 9.0 RAD21 RARA YY1 ZNF366 POLR3A SCRT2 FOS EGR2 USF2 CEBPB KCNJ15 SPATA20P1 DSCR8 GC21P038273 GC21M038327
GH21F038302 1.3 FANTOM5 Ensembl ENCODE 4.9 -64.7 -64678 1.5 ESRRA JUN HLF CEBPB MAX USF2 NR3C1 MNT EP300 SREBF1 KCNJ15 SPATA20P1 GC21P038273 GC21M038327
GH21F038257 1.2 FANTOM5 Ensembl ENCODE 5.2 -19.9 -19894 3.1 CTCF JUND BHLHE40 FOS RAD21 MAFK NFE2L2 KCNJ15 SPATA20P1 LOC105372801
GH21F038299 0.4 Ensembl 4.8 -62.1 -62080 2.1 POLR2A SALL1 KCNJ15 SPATA20P1 GC21P038273 GC21M038327
GH21F038239 1 Ensembl ENCODE 0.8 -2.8 -2790 3.8 SIN3A ZNF335 CTBP1 GLIS2 ZFHX2 GATA3 ZBTB48 SCRT2 PATZ1 EGR2 KCNJ15 SPATA20P1 LOC105372801
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA20P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA20P1 Gene

Chromosome:
21
Start:
38,238,227 bp from pter
End:
38,238,664 bp from pter
Size:
438 bases
Orientation:
Minus strand

Genomic View for SPATA20P1 Gene

Genes around SPATA20P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA20P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA20P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA20P1 Gene

Proteins for SPATA20P1 Gene

Post-translational modifications for SPATA20P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA20P1 Gene

Domains & Families for SPATA20P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA20P1 Gene

Function for SPATA20P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA20P1 Gene

Localization for SPATA20P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA20P1 Gene

Pathways & Interactions for SPATA20P1 Gene

SuperPathways for SPATA20P1 Gene

No Data Available

Interacting Proteins for SPATA20P1 Gene

Gene Ontology (GO) - Biological Process for SPATA20P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA20P1 Gene

Transcripts for SPATA20P1 Gene

mRNA/cDNA for SPATA20P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA20P1 Gene

No ASD Table

Relevant External Links for SPATA20P1 Gene

GeneLoc Exon Structure for
SPATA20P1
ECgene alternative splicing isoforms for
SPATA20P1

Expression for SPATA20P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA20P1 Gene

mRNA differential expression in normal tissues according to GTEx for SPATA20P1 Gene

This gene is overexpressed in Whole Blood (x25.9).

NURSA nuclear receptor signaling pathways regulating expression of SPATA20P1 Gene:

SPATA20P1
genes like me logo Genes that share expression patterns with SPATA20P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA20P1 Gene

Orthologs for SPATA20P1 Gene

Evolution for SPATA20P1 Gene

ENSEMBL:
Gene Tree for SPATA20P1 (if available)
TreeFam:
Gene Tree for SPATA20P1 (if available)

No data available for Orthologs for SPATA20P1 Gene

Paralogs for SPATA20P1 Gene

No data available for Paralogs for SPATA20P1 Gene

Variants for SPATA20P1 Gene

Relevant External Links for SPATA20P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA20P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA20P1 Gene

Disorders for SPATA20P1 Gene

No disorders were found for SPATA20P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SPATA20P1 Gene

Publications for SPATA20P1 Gene

No publications were found for SPATA20P1 Gene.

Products for SPATA20P1 Gene

Sources for SPATA20P1 Gene

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