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Aliases for SPATA17-AS1 Gene

Subcategory (RNA class) for SPATA17-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA17-AS1 Gene

  • SPATA17 Antisense RNA 1 2 3 5

External Ids for SPATA17-AS1 Gene

Previous GeneCards Identifiers for SPATA17-AS1 Gene

  • GC00U935064

Summaries for SPATA17-AS1 Gene

GeneCards Summary for SPATA17-AS1 Gene

SPATA17-AS1 (SPATA17 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPATA17-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA17-AS1 Gene

Genomics for SPATA17-AS1 Gene

GeneHancer (GH) Regulatory Elements for SPATA17-AS1 Gene

Promoters and enhancers for SPATA17-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I217813 Enhancer 0.4 UCNEbase 11.8 -28.2 -28155 0.4 SPATA17-AS1 GC01M217852 SPATA17
GH01I217781 Enhancer 0.5 UCNEbase 0.8 +3.9 3949 0.3 POLR2A SPATA17 SPATA17-AS1 GC01P217753
GH01I217791 Enhancer 0.4 UCNEbase 0.4 -6.0 -6047 0.3 SPATA17 SPATA17-AS1 GC01M217852
GH01I217839 Enhancer 0.5 UCNEbase 0.2 -54.3 -54291 0.3 EZH2 GC01M217852 SPATA17-AS1 SPATA17
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SPATA17-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SPATA17-AS1 Gene

Genomic Locations for SPATA17-AS1 Gene
chr1:217,781,198-217,785,120
(GRCh38/hg38)
Size:
3,923 bases
Orientation:
Minus strand

Genomic View for SPATA17-AS1 Gene

Genes around SPATA17-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA17-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA17-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA17-AS1 Gene

Proteins for SPATA17-AS1 Gene

Post-translational modifications for SPATA17-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA17-AS1 Gene

Domains & Families for SPATA17-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA17-AS1 Gene

Function for SPATA17-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA17-AS1 Gene

Localization for SPATA17-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA17-AS1 Gene

Pathways & Interactions for SPATA17-AS1 Gene

SuperPathways for SPATA17-AS1 Gene

No Data Available

Interacting Proteins for SPATA17-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA17-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA17-AS1 Gene

Drugs & Compounds for SPATA17-AS1 Gene

No Compound Related Data Available

Transcripts for SPATA17-AS1 Gene

mRNA/cDNA for SPATA17-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA17-AS1 Gene

No ASD Table

Relevant External Links for SPATA17-AS1 Gene

GeneLoc Exon Structure for
SPATA17-AS1
ECgene alternative splicing isoforms for
SPATA17-AS1

Expression for SPATA17-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA17-AS1 Gene

genes like me logo Genes that share expression patterns with SPATA17-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA17-AS1 Gene

Orthologs for SPATA17-AS1 Gene

Evolution for SPATA17-AS1 Gene

ENSEMBL:
Gene Tree for SPATA17-AS1 (if available)
TreeFam:
Gene Tree for SPATA17-AS1 (if available)

No data available for Orthologs for SPATA17-AS1 Gene

Paralogs for SPATA17-AS1 Gene

No data available for Paralogs for SPATA17-AS1 Gene

Variants for SPATA17-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA17-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000913214 -- 217,784,035(-) TAAGTAA/TAA intron_variant
rs1001439428 -- 217,785,354(-) C/G/T upstream_transcript_variant
rs1001521379 -- 217,786,261(-) G/T upstream_transcript_variant
rs1002748460 -- 217,781,258(-) T/A non_coding_transcript_variant
rs1003035331 -- 217,786,809(-) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA17-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv549217 CNV loss 21841781

Additional Variant Information for SPATA17-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA17-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA17-AS1 Gene

Disorders for SPATA17-AS1 Gene

Additional Disease Information for SPATA17-AS1

No disorders were found for SPATA17-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA17-AS1 Gene

Publications for SPATA17-AS1 Gene

No publications were found for SPATA17-AS1 Gene.

Products for SPATA17-AS1 Gene

Sources for SPATA17-AS1 Gene

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