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Aliases for SPATA13-AS1 Gene

Subcategory (RNA class) for SPATA13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPATA13-AS1 Gene

  • SPATA13 Antisense RNA 1 2 3 5
  • SPATA13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPATA13-AS1 Gene

Previous GeneCards Identifiers for SPATA13-AS1 Gene

  • GC00U933567
  • GC13M024827

Summaries for SPATA13-AS1 Gene

GeneCards Summary for SPATA13-AS1 Gene

SPATA13-AS1 (SPATA13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA13-AS1 Gene

Genomics for SPATA13-AS1 Gene

Regulatory Elements for SPATA13-AS1 Gene

Enhancers for SPATA13-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F024050 1.4 FANTOM5 Ensembl ENCODE 10.8 +203.6 203598 1.5 PTRF ZNF766 FOS ETV6 HDAC8 ZNF592 CREB3 MEF2D TFDP1 ZNF589 SPATA13 MIR2276 SPATA13-AS1 PARP4 PIR59399 IPO7P2
GH13F024214 1.2 Ensembl ENCODE 11.5 +37.6 37649 4.4 ELF3 MLX ARID4B ZNF48 RAD21 ZNF2 RARA YY1 ZNF366 EGR2 MIR2276 SPATA13 SPATA13-AS1 PIR40383
GH13F024220 1.1 Ensembl ENCODE 11.3 +33.7 33685 2.1 CTCF SAP130 WRNIP1 ZFP64 ARID4B MAX RAD21 ZNF316 GATA3 SMC3 MIR2276 SPATA13 SPATA13-AS1 PIR40383
GH13F024228 0.9 Ensembl ENCODE 13.2 +25.4 25368 0.3 SCRT1 CTCF ZNF654 MAX TRIM22 RAD21 ZNF664 ZNF692 SCRT2 ZNF547 SPATA13-AS1 SPATA13 MIR2276 PIR40383
GH13F024038 1.1 FANTOM5 Ensembl ENCODE 10.8 +215.6 215562 1.2 JUND MTA2 MAFK ATF2 SP7 SPATA13 MIR2276 SPATA13-AS1 PIR59399 IPO7P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA13-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA13-AS1 Gene

24,252,749 bp from pter
24,254,439 bp from pter
1,691 bases
Minus strand

Genomic View for SPATA13-AS1 Gene

Genes around SPATA13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA13-AS1 Gene

Proteins for SPATA13-AS1 Gene

Post-translational modifications for SPATA13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA13-AS1 Gene

Domains & Families for SPATA13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA13-AS1 Gene

Function for SPATA13-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA13-AS1 Gene

Localization for SPATA13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA13-AS1 Gene

Pathways & Interactions for SPATA13-AS1 Gene

SuperPathways for SPATA13-AS1 Gene

No Data Available

Interacting Proteins for SPATA13-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA13-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SPATA13-AS1 Gene

Transcripts for SPATA13-AS1 Gene

mRNA/cDNA for SPATA13-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA13-AS1 Gene

SPATA13 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA13-AS1 Gene

No ASD Table

Relevant External Links for SPATA13-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPATA13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPATA13-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPATA13-AS1 Gene:

genes like me logo Genes that share expression patterns with SPATA13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPATA13-AS1 Gene

Orthologs for SPATA13-AS1 Gene

Evolution for SPATA13-AS1 Gene

Gene Tree for SPATA13-AS1 (if available)
Gene Tree for SPATA13-AS1 (if available)

No data available for Orthologs for SPATA13-AS1 Gene

Paralogs for SPATA13-AS1 Gene

No data available for Paralogs for SPATA13-AS1 Gene

Variants for SPATA13-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA13-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs111438506 -- 24,253,611(+) TCAAT(A/G)TGTAG intron-variant
rs111699682 -- 24,254,470(+) TCATT(A/T)TTATT intron-variant, upstream-variant-2KB
rs111880392 -- 24,255,203(+) GGACA(C/T)AGTCA intron-variant, upstream-variant-2KB
rs111940849 -- 24,255,837(+) AAATT(A/G)AGCTC intron-variant, upstream-variant-2KB
rs113517036 -- 24,255,894(+) TTTCA(A/G)ATGAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPATA13-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv561292 CNV loss 21841781
nsv525965 CNV gain 19592680
nsv455837 CNV gain 19166990
nsv1151909 OTHER inversion 26484159
nsv1140246 OTHER inversion 24896259
nsv1078303 OTHER inversion 25765185
nsv1050731 CNV gain 25217958
esv5325 OTHER complex 18987735
esv3892311 CNV gain 25118596
esv3892310 CNV gain 25118596
esv3631540 CNV gain 21293372
esv3582215 CNV gain 25503493
esv3580576 CNV loss 25503493
esv2751137 CNV gain 17911159
esv2751136 CNV loss 17911159
esv2422502 CNV duplication 17116639
esv2422202 CNV duplication 17116639
dgv3084n54 CNV gain 21841781
dgv1615n100 CNV gain 25217958

Relevant External Links for SPATA13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA13-AS1 Gene

Disorders for SPATA13-AS1 Gene

Relevant External Links for SPATA13-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SPATA13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA13-AS1 Gene

Publications for SPATA13-AS1 Gene

No publications were found for SPATA13-AS1 Gene.

Products for SPATA13-AS1 Gene

Sources for SPATA13-AS1 Gene

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