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Aliases for SPATA13-AS1 Gene

Subcategory (RNA class) for SPATA13-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPATA13-AS1 Gene

  • SPATA13 Antisense RNA 1 2 3 5
  • SPATA13 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPATA13-AS1 Gene

Previous GeneCards Identifiers for SPATA13-AS1 Gene

  • GC00U933567
  • GC13M024827

Summaries for SPATA13-AS1 Gene

GeneCards Summary for SPATA13-AS1 Gene

SPATA13-AS1 (SPATA13 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPATA13-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA13-AS1 Gene

Genomics for SPATA13-AS1 Gene

Regulatory Elements for SPATA13-AS1 Gene

Enhancers for SPATA13-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H024217 1.4 Ensembl ENCODE dbSUPER 11.5 +36.4 36368 1 ELF3 FOXA2 MLX ARID4B RAD21 RARA YY1 EGR2 SP5 MXD4 MIR2276 SPATA13 SPATA13-AS1 PIR40383
GH13H024219 1.4 Ensembl ENCODE dbSUPER 11.4 +33.7 33685 2 FOXA2 RB1 ZFP64 ARID4B BATF RAD21 ZNF143 FOS ATF7 CREM MIR2276 SPATA13 SPATA13-AS1 PIR40383
GH13H024228 1.2 Ensembl ENCODE dbSUPER 13.2 +25.4 25368 0 SMARCA5 SCRT1 CTCF ZNF654 RFX1 TRIM22 MAX REST RAD21 ZNF664 SPATA13-AS1 SPATA13 MIR2276 PIR40383
GH13H024050 1.4 FANTOM5 Ensembl ENCODE dbSUPER 10.8 +203.7 203707 1 MAFG MNT FOSL1 JUND ZNF316 FOS MAFK EMSY SPATA13 MIR2276 SPATA13-AS1 PARP4 PIR59399 IPO7P2
GH13H024215 1.3 Ensembl ENCODE dbSUPER 11.5 +38.5 38537 1 FOXA2 JUN ZNF2 RAD21 YY1 ZNF366 ZNF600 PRDM10 ZNF639 REST MIR2276 SPATA13 SPATA13-AS1 PIR40383
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA13-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPATA13-AS1 Gene

Chromosome:
13
Start:
24,252,749 bp from pter
End:
24,254,439 bp from pter
Size:
1,691 bases
Orientation:
Minus strand

Genomic View for SPATA13-AS1 Gene

Genes around SPATA13-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA13-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA13-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA13-AS1 Gene

Proteins for SPATA13-AS1 Gene

Post-translational modifications for SPATA13-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPATA13-AS1 Gene

Domains & Families for SPATA13-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPATA13-AS1 Gene

Function for SPATA13-AS1 Gene

Phenotypes From GWAS Catalog for SPATA13-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPATA13-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA13-AS1 Gene

Localization for SPATA13-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPATA13-AS1 Gene

Pathways & Interactions for SPATA13-AS1 Gene

SuperPathways for SPATA13-AS1 Gene

No Data Available

Interacting Proteins for SPATA13-AS1 Gene

Gene Ontology (GO) - Biological Process for SPATA13-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA13-AS1 Gene

Drugs & Compounds for SPATA13-AS1 Gene

No Compound Related Data Available

Transcripts for SPATA13-AS1 Gene

mRNA/cDNA for SPATA13-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA13-AS1 Gene

SPATA13 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPATA13-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA13-AS1 Gene

No ASD Table

Relevant External Links for SPATA13-AS1 Gene

GeneLoc Exon Structure for
SPATA13-AS1
ECgene alternative splicing isoforms for
SPATA13-AS1

Expression for SPATA13-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA13-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPATA13-AS1 Gene:

Hs.577998
genes like me logo Genes that share expression patterns with SPATA13-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA13-AS1 Gene

Orthologs for SPATA13-AS1 Gene

Evolution for SPATA13-AS1 Gene

ENSEMBL:
Gene Tree for SPATA13-AS1 (if available)
TreeFam:
Gene Tree for SPATA13-AS1 (if available)

No data available for Orthologs for SPATA13-AS1 Gene

Paralogs for SPATA13-AS1 Gene

No data available for Paralogs for SPATA13-AS1 Gene

Variants for SPATA13-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPATA13-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000039896 -- 24,253,236(+) AACAG(A/G)GCAGA intron-variant
rs1000877840 -- 24,253,317(+) CTAAT(G/T)AACAG intron-variant
rs1000908862 -- 24,253,561(+) TAAAA(C/T)GTCAT intron-variant
rs1002371779 -- 24,253,933(+) GGTCA(C/T)GAGGA intron-variant
rs1002811595 -- 24,254,246(+) AAATT(C/T)AGTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPATA13-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1615n100 CNV gain 25217958
dgv3084n54 CNV gain 21841781
esv2422202 CNV duplication 17116639
esv2422502 CNV duplication 17116639
esv2751136 CNV loss 17911159
esv2751137 CNV gain 17911159
esv3580576 CNV loss 25503493
esv3582215 CNV gain 25503493
esv3631540 CNV gain 21293372
esv3892310 CNV gain 25118596
esv3892311 CNV gain 25118596
esv5325 OTHER complex 18987735
nsv1050731 CNV gain 25217958
nsv1078303 OTHER inversion 25765185
nsv1140246 OTHER inversion 24896259
nsv1151909 OTHER inversion 26484159
nsv455837 CNV gain 19166990
nsv525965 CNV gain 19592680
nsv561292 CNV loss 21841781

Relevant External Links for SPATA13-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA13-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPATA13-AS1 Gene

Disorders for SPATA13-AS1 Gene

Relevant External Links for SPATA13-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA13-AS1

No disorders were found for SPATA13-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA13-AS1 Gene

Publications for SPATA13-AS1 Gene

No publications were found for SPATA13-AS1 Gene.

Products for SPATA13-AS1 Gene

Sources for SPATA13-AS1 Gene

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