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Aliases for SPATA1 Gene

Aliases for SPATA1 Gene

  • Spermatogenesis Associated 1 2 3 5
  • Sperm-Specific Protein SP-2 3 4
  • Spermatogenesis-Associated Protein 1 3
  • SPAP1 3
  • SP-2 3

External Ids for SPATA1 Gene

Previous GeneCards Identifiers for SPATA1 Gene

  • GC01M085538
  • GC01P084109
  • GC01P084260
  • GC01P084394
  • GC01P084684
  • GC01P084744
  • GC01P084971

Summaries for SPATA1 Gene

GeneCards Summary for SPATA1 Gene

SPATA1 (Spermatogenesis Associated 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA1 Gene

Genomics for SPATA1 Gene

Regulatory Elements for SPATA1 Gene

Enhancers for SPATA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G084503 1.5 FANTOM5 ENCODE 20.3 -0.5 -469 4.3 HDGF CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 ZBTB7B SPATA1 BCL10 ENSG00000271576 GNG5 CTBS RPF1 MCOLN2
GH01G084618 1.6 Ensembl ENCODE dbSUPER 18.4 +113.9 113887 2.9 PKNOX1 CREB3L1 ZFP64 SIN3A ZNF2 CBX5 ZNF143 FOS ZNF263 SP3 ENSG00000271576 SPATA1 CTBS GNG5 RPF1 MCOLN3 LINC01461 GC01M084581
GH01G084597 1.1 Ensembl ENCODE 23.9 +93.2 93189 3.0 PKNOX1 ZBTB21 JUN ASH2L RELA FOSL1 GTF3C2 ZFHX2 GATA2 CBX5 SPATA1 GNG5 RPF1 BCL10 CTBS GC01M084581 LINC01461
GH01G084630 1.4 Ensembl ENCODE dbSUPER 16.4 +127.2 127197 5.9 PKNOX1 SIN3A RCOR1 FOS ZEB2 ZNF217 MBD2 RAD51 SMARCA4 MTA1 SPATA1 GNG5 RPF1 CTBS LINC01555 LINC01461
GH01G084572 1.5 FANTOM5 ENCODE 9.9 +67.6 67589 2.8 HDGF FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 CTBS SPATA1 GNG5 MCOLN2 GC01P084567 PIR44908
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPATA1 on UCSC Golden Path with GeneCards custom track

Promoters for SPATA1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000009117 -300 3201 HDGF CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 ZBTB7B

Genomic Location for SPATA1 Gene

Chromosome:
1
Start:
84,506,300 bp from pter
End:
84,566,194 bp from pter
Size:
59,895 bases
Orientation:
Plus strand

Genomic View for SPATA1 Gene

Genes around SPATA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPATA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPATA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA1 Gene

Proteins for SPATA1 Gene

  • Protein details for SPATA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VX52-SPAT1_HUMAN
    Recommended name:
    Spermatogenesis-associated protein 1
    Protein Accession:
    Q5VX52
    Secondary Accessions:
    • A0PJU9
    • Q0VDJ9
    • Q0VDK0
    • Q6P386
    • Q9HAR4

    Protein attributes for SPATA1 Gene

    Size:
    437 amino acids
    Molecular mass:
    50307 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAG22047.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI19642.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI19643.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI27635.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAH70205.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAM13069.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for SPATA1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPATA1 Gene

Post-translational modifications for SPATA1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SPATA1 Gene

Domains & Families for SPATA1 Gene

Protein Domains for SPATA1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPATA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPATA1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SPATA1 Gene

Function for SPATA1 Gene

genes like me logo Genes that share phenotypes with SPATA1: view

Animal Model Products

Inhibitory RNA Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPATA1 Gene

Localization for SPATA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPATA1 Gene

Pathways & Interactions for SPATA1 Gene

SuperPathways for SPATA1 Gene

No Data Available

Interacting Proteins for SPATA1 Gene

Selected Interacting proteins: Q5VX52-SPAT1_HUMAN for SPATA1 Gene via IID

Gene Ontology (GO) - Biological Process for SPATA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPATA1 Gene

Drugs & Compounds for SPATA1 Gene

No Compound Related Data Available

Transcripts for SPATA1 Gene

mRNA/cDNA for SPATA1 Gene

(11) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA1 Gene

Spermatogenesis associated 1:
Representative Sequences:

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA1 Gene

No ASD Table

Relevant External Links for SPATA1 Gene

GeneLoc Exon Structure for
SPATA1
ECgene alternative splicing isoforms for
SPATA1

Expression for SPATA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPATA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPATA1 Gene

This gene is overexpressed in Whole Blood (x5.8).

Protein differential expression in normal tissues from HIPED for SPATA1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SPATA1 Gene



Protein tissue co-expression partners for SPATA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SPATA1 Gene:

SPATA1

SOURCE GeneReport for Unigene cluster for SPATA1 Gene:

Hs.584956
genes like me logo Genes that share expression patterns with SPATA1: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPATA1 Gene

Orthologs for SPATA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPATA1 34
  • 99.49 (n)
dog
(Canis familiaris)
Mammalia SPATA1 34
  • 89.55 (n)
cow
(Bos Taurus)
Mammalia SPATA1 34
  • 87.34 (n)
mouse
(Mus musculus)
Mammalia Spata1 16 34
  • 85.93 (n)
rat
(Rattus norvegicus)
Mammalia Spata1 34
  • 83.69 (n)
chicken
(Gallus gallus)
Aves SPATA1 34
  • 66.28 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia spata1 34
  • 57.78 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC101885834 34
  • 48.47 (n)
Species where no ortholog for SPATA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPATA1 Gene

ENSEMBL:
Gene Tree for SPATA1 (if available)
TreeFam:
Gene Tree for SPATA1 (if available)

Paralogs for SPATA1 Gene

No data available for Paralogs for SPATA1 Gene

Variants for SPATA1 Gene

Sequence variations from dbSNP and Humsavar for SPATA1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000019693 -- 84,530,081(+) TCAAA(C/T)TCCTG intron-variant
rs1000087909 -- 84,528,671(+) CCTGT(A/T)ATGTA intron-variant
rs1000090045 -- 84,510,811(+) ATAAA(C/T)AATGG intron-variant
rs1000185189 -- 84,549,896(+) TTATA(A/C)TTTAT intron-variant
rs1000222999 -- 84,508,936(+) GGGAA(G/T)ATACT intron-variant

Relevant External Links for SPATA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPATA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPATA1 Gene

Disorders for SPATA1 Gene

Relevant External Links for SPATA1

Genetic Association Database (GAD)
SPATA1
Human Genome Epidemiology (HuGE) Navigator
SPATA1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPATA1

No disorders were found for SPATA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPATA1 Gene

Publications for SPATA1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  5. Single-nucleotide polymorphisms, acute rejection, and severity of tubulitis in kidney transplantation, accounting for center-to-center variation. (PMID: 21085059) Israni A. … Oetting W.S. (Transplantation 2010) 46 64

Products for SPATA1 Gene

Sources for SPATA1 Gene

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