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Aliases for SPATA1 Gene

Aliases for SPATA1 Gene

  • Spermatogenesis Associated 1 2 3
  • Sperm-Specific Protein SP-2 3 4
  • Spermatogenesis Associated Protein 1 3
  • Spermatogenesis-Associated Protein 1 3
  • SPATA13 6
  • SPAP1 3
  • ASEF2 6
  • SP-2 3

External Ids for SPATA1 Gene

Previous GeneCards Identifiers for SPATA1 Gene

  • GC01M085538
  • GC01P084109
  • GC01P084260
  • GC01P084394
  • GC01P084684
  • GC01P084744
  • GC01P084971

Summaries for SPATA1 Gene

GeneCards Summary for SPATA1 Gene

SPATA1 (Spermatogenesis Associated 1) is a Protein Coding gene. Among its related pathways are G-protein signaling_Regulation of CDC42 activity and Regulation of CDC42 activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPATA1 Gene

Genomics for SPATA1 Gene

Regulatory Elements for SPATA1 Gene

Genomic Location for SPATA1 Gene

84,506,289 bp from pter
84,566,194 bp from pter
59,906 bases
Plus strand

Genomic View for SPATA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPATA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPATA1 Gene

Proteins for SPATA1 Gene

  • Protein details for SPATA1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Spermatogenesis-associated protein 1
    Protein Accession:
    Secondary Accessions:
    • A0PJU9
    • Q0VDJ9
    • Q0VDK0
    • Q6P386
    • Q9HAR4

    Protein attributes for SPATA1 Gene

    437 amino acids
    Molecular mass:
    50307 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAG22047.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI19642.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI19643.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI27635.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAH70205.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=CAM13069.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

    Alternative splice isoforms for SPATA1 Gene


neXtProt entry for SPATA1 Gene

Proteomics data for SPATA1 Gene at MOPED

Post-translational modifications for SPATA1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SPATA1 Gene

Domains for SPATA1 Gene

Protein Domains for SPATA1 Gene


Suggested Antigen Peptide Sequences for SPATA1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPATA1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SPATA1 Gene

Function for SPATA1 Gene

miRNA for SPATA1 Gene

miRTarBase miRNAs that target SPATA1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targets and HOMER Transcription for SPATA1 Gene

Localization for SPATA1 Gene

Subcellular locations from

Jensen Localization Image for SPATA1 Gene COMPARTMENTS Subcellular localization image for SPATA1 gene
Compartment Confidence
cytosol 2
nucleus 2
golgi apparatus 1
mitochondrion 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SPATA1 Gene

Pathways for SPATA1 Gene

genes like me logo Genes that share pathways with SPATA1: view

Pathways by source for SPATA1 Gene

2 BioSystems pathways for SPATA1 Gene
1 GeneGo (Thomson Reuters) pathway for SPATA1 Gene

Interacting Proteins for SPATA1 Gene

Gene Ontology (GO) - Biological Process for SPATA1 Gene


Transcripts for SPATA1 Gene

mRNA/cDNA for SPATA1 Gene

(26) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPATA1 Gene

Spermatogenesis associated 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPATA1 Gene

No ASD Table

Relevant External Links for SPATA1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPATA1 Gene

mRNA expression in normal human tissues for SPATA1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPATA1 Gene

This gene is overexpressed in Whole Blood (5.8).

Protein differential expression in normal tissues for SPATA1 Gene

This gene is overexpressed in Monocytes (69.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPATA1 Gene

SOURCE GeneReport for Unigene cluster for SPATA1 Gene Hs.584956

genes like me logo Genes that share expressions with SPATA1: view

Expression partners for SPATA1 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SPATA1 Gene

Orthologs for SPATA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPATA1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SPATA1 35
  • 87.34 (n)
  • 78.9 (a)
(Canis familiaris)
Mammalia SPATA1 35
  • 89.55 (n)
  • 82.3 (a)
(Mus musculus)
Mammalia Spata1 35
  • 85.93 (n)
  • 78.66 (a)
Spata1 16
(Pan troglodytes)
Mammalia SPATA1 35
  • 99.49 (n)
  • 99.12 (a)
(Rattus norvegicus)
Mammalia Spata1 35
  • 83.69 (n)
  • 78.18 (a)
(Gallus gallus)
Aves SPATA1 35
  • 66.28 (n)
  • 56.07 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia spata1 35
  • 57.78 (n)
  • 48.58 (a)
(Danio rerio)
Actinopterygii LOC101885834 35
  • 48.47 (n)
  • 35.51 (a)
Species with no ortholog for SPATA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPATA1 Gene

Gene Tree for SPATA1 (if available)
Gene Tree for SPATA1 (if available)

Paralogs for SPATA1 Gene

No data available for Paralogs for SPATA1 Gene

Variants for SPATA1 Gene

Sequence variations from dbSNP and Humsavar for SPATA1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs186360 -- 84,526,427(+) CCAGA(A/G)GGATC intron-variant
rs312395 -- 84,509,277(+) tacag(C/T)gaact intron-variant
rs312398 -- 84,525,227(+) ctccc(A/G)aagtg intron-variant
rs312399 -- 84,520,487(-) ATAGA(A/G)AAAAA intron-variant
rs312400 -- 84,517,303(+) atcag(C/G)gttca intron-variant

Relevant External Links for SPATA1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPATA1 Gene

Disorders for SPATA1 Gene

Relevant External Links for SPATA1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for SPATA1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for SPATA1 Gene

Publications for SPATA1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Single-nucleotide polymorphisms, acute rejection, and severity of tubulitis in kidney transplantation, accounting for center-to-center variation. (PMID: 21085059) Israni A. … Oetting W.S. (Transplantation 2010) 48
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SPATA1 Gene

Sources for SPATA1 Gene

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