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Aliases for SPART-AS1 Gene

Subcategory (RNA class) for SPART-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPART-AS1 Gene

  • SPART Antisense RNA 1 2 3
  • SPG20 Antisense RNA 1 2 3 5
  • SPG20 Opposite Strand 2 3
  • SPG20-AS1 3 5
  • Chromosome 13 Open Reading Frame 43 2
  • C13orf43 3
  • SPG20OS 3

External Ids for SPART-AS1 Gene

Previous HGNC Symbols for SPART-AS1 Gene

  • C13orf43
  • SPG20OS
  • SPG20-AS1

Summaries for SPART-AS1 Gene

GeneCards Summary for SPART-AS1 Gene

SPART-AS1 (SPART Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SPART-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPART-AS1 Gene

Genomics for SPART-AS1 Gene

Regulatory Elements for SPART-AS1 Gene

Enhancers for SPART-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H036997 1.4 ENCODE dbSUPER 12.2 +653.7 653652 4 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 SUPT20H EXOSC8 RFXAP SPART-AS1 ALG5 SMAD9 CSNK1A1L
GH13H036416 1.4 FANTOM5 Ensembl ENCODE 6.7 +71.5 71487 2 TBP BATF ZEB1 ATF7 ETV6 RUNX3 CREM IKZF2 JUNB CEBPB SPART-AS1 SPART CCNA1
GH13H036777 0.9 Ensembl ENCODE 10.2 +432.0 432047 1 ZNF687 NR2F1 EBF1 DPF2 ZNF585B GLIS1 IKZF1 ZNF24 IKZF2 RFXAP ARL2BPP3 SPART-AS1 LOC102723490 TCEAL4P1
GH13H036673 0.8 ENCODE 10.2 +327.5 327528 0 ZIC2 ZNF324 ZFHX2 GLIS2 POLR2A PATZ1 ZNF391 EGR2 EZH2 SP3 RFXAP SPART-AS1 SERTM1 GAPDHP34
GH13H036427 0.7 ENCODE 7 +81.8 81819 1 SMARCE1 SMARCC1 NFIB JUN MAX CEBPB CEBPG DPF2 EP300 ZNF217 SPART-AS1 CCDC169 CCNA1 SPART
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPART-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SPART-AS1 Gene

Chromosome:
13
Start:
36,346,431 bp from pter
End:
36,369,735 bp from pter
Size:
23,305 bases
Orientation:
Plus strand

Genomic View for SPART-AS1 Gene

Genes around SPART-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPART-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPART-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPART-AS1 Gene

Proteins for SPART-AS1 Gene

Post-translational modifications for SPART-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPART-AS1 Gene

Domains & Families for SPART-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPART-AS1 Gene

Function for SPART-AS1 Gene

Phenotypes for SPART-AS1 Gene

GenomeRNAi human phenotypes for SPART-AS1:
genes like me logo Genes that share phenotypes with SPART-AS1: view

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPART-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPART-AS1 Gene

Localization for SPART-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SPART-AS1 gene
Compartment Confidence
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SPART-AS1 Gene

Pathways & Interactions for SPART-AS1 Gene

SuperPathways for SPART-AS1 Gene

No Data Available

Interacting Proteins for SPART-AS1 Gene

Gene Ontology (GO) - Biological Process for SPART-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPART-AS1 Gene

Drugs & Compounds for SPART-AS1 Gene

No Compound Related Data Available

Transcripts for SPART-AS1 Gene

mRNA/cDNA for SPART-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SPART-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SPART-AS1 Gene

No ASD Table

Relevant External Links for SPART-AS1 Gene

GeneLoc Exon Structure for
SPART-AS1
ECgene alternative splicing isoforms for
SPART-AS1

Expression for SPART-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPART-AS1 Gene

Orthologs for SPART-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for SPART-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPG20OS 34
  • 100 (a)
OneToOne
Species where no ortholog for SPART-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPART-AS1 Gene

ENSEMBL:
Gene Tree for SPART-AS1 (if available)
TreeFam:
Gene Tree for SPART-AS1 (if available)

Paralogs for SPART-AS1 Gene

No data available for Paralogs for SPART-AS1 Gene

Variants for SPART-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPART-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs2281864 Likely benign 36,346,475(-) TGCGG(A/G)CTCTG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs9566108 Likely benign 36,346,367(+) CCTCG(C/T)GCGCG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs528288894 Uncertain significance 36,346,340(+) CGGGG(G/T)CCGGT intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886050137 Uncertain significance 36,346,255(-) GGCAA(C/T)GCCGG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886050138 Uncertain significance 36,346,468(-) CTCTG(-/TG)GCGGG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for SPART-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPART-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPART-AS1 Gene

Disorders for SPART-AS1 Gene

Relevant External Links for SPART-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPART-AS1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPART-AS1

No disorders were found for SPART-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPART-AS1 Gene

Publications for SPART-AS1 Gene

  1. Expressed sequence tag analysis of adult human lens for the NEIBank Project: over 2000 non-redundant transcripts, novel genes and splice variants. (PMID: 12107413) Wistow G … Peterson K (Molecular vision 2002) 3 60

Products for SPART-AS1 Gene

Sources for SPART-AS1 Gene

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