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Aliases for SPARCL1 Gene

Aliases for SPARCL1 Gene

  • SPARC-Like 1 (Hevin) 2 3
  • High Endothelial Venule Protein 3 4
  • MAST 9 3 4
  • Proliferation-Inducing Protein 33 3
  • SPARC-Like 1 (Mast9, Hevin) 2
  • SPARC-Like Protein 1 3
  • MAST9 3
  • PIG33 3
  • Hevin 4
  • SC1 3

External Ids for SPARCL1 Gene

Summaries for SPARCL1 Gene

GeneCards Summary for SPARCL1 Gene

SPARCL1 (SPARC-Like 1 (Hevin)) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is SPARC.

Gene Wiki entry for SPARCL1 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPARCL1 Gene

Genomics for SPARCL1 Gene

Genomic Location for SPARCL1 Gene

Start:
87,473,335 bp from pter
End:
87,531,061 bp from pter
Size:
57,727 bases
Orientation:
Minus strand

Genomic View for SPARCL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPARCL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPARCL1 Gene

Regulatory Elements for SPARCL1 Gene

Proteins for SPARCL1 Gene

  • Protein details for SPARCL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14515-SPRL1_HUMAN
    Recommended name:
    SPARC-like protein 1
    Protein Accession:
    Q14515
    Secondary Accessions:
    • B4E2Z0
    • E7ESU2
    • Q14800

    Protein attributes for SPARCL1 Gene

    Size:
    664 amino acids
    Molecular mass:
    75208 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPARCL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPARCL1 Gene

Proteomics data for SPARCL1 Gene at MOPED

Post-translational modifications for SPARCL1 Gene

  • N- and O-glycosylated. O-glycosylated with a core 1 or possibly core 8 glycan.
  • Modification sites at PhosphoSitePlus
  • Glycosylation at Thr31, Thr40, Ser44, Thr116, Asn169, Asn176, Asn196, Asn280, Thr331, Thr398, Asn412, and Asn476

No data available for DME Specific Peptides for SPARCL1 Gene

Domains for SPARCL1 Gene

Gene Families for SPARCL1 Gene

HGNC:
  • EFHAND :EF-hand domain containing

UniProtKB/Swiss-Prot:

SPRL1_HUMAN
Domain:
  • Contains 1 EF-hand domain.:
    • Q14515
  • Contains 1 follistatin-like domain.:
    • Q14515
  • Contains 1 Kazal-like domain.:
    • Q14515
Family:
  • Belongs to the SPARC family.:
    • Q14515
genes like me logo Genes that share domains with SPARCL1: view

Function for SPARCL1 Gene

Gene Ontology (GO) - Molecular Function for SPARCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SPARCL1: view

Phenotypes for SPARCL1 Gene

genes like me logo Genes that share phenotypes with SPARCL1: view

Animal Models for SPARCL1 Gene

MGI Knock Outs for SPARCL1:

miRNA for SPARCL1 Gene

miRTarBase miRNAs that target SPARCL1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for SPARCL1 Gene

Localization for SPARCL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPARCL1 Gene

Secreted, extracellular space, extracellular matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPARCL1 Gene COMPARTMENTS Subcellular localization image for SPARCL1 gene
Compartment Confidence
extracellular 2

Gene Ontology (GO) - Cellular Components for SPARCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0005615 extracellular space IDA 16502470
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with SPARCL1: view

Pathways for SPARCL1 Gene

SuperPathways for SPARCL1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for SPARCL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IEA --
genes like me logo Genes that share ontologies with SPARCL1: view

No data available for Pathways by source for SPARCL1 Gene

Compounds for SPARCL1 Gene

(1) Novoseek inferred chemical compound relationships for SPARCL1 Gene

Compound -log(P) Hits PubMed IDs
cysteine 19.5 2
genes like me logo Genes that share compounds with SPARCL1: view

Transcripts for SPARCL1 Gene

Unigene Clusters for SPARCL1 Gene

SPARC-like 1 (hevin):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPARCL1 Gene

ExUns: 1a · 1b · 1c · 1d ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16
SP1:
SP2: -
SP3: - - - -
SP4: -
SP5:
SP6: -
SP7: - - - - - - - -

Relevant External Links for SPARCL1 Gene

GeneLoc Exon Structure for
SPARCL1
ECgene alternative splicing isoforms for
SPARCL1

Expression for SPARCL1 Gene

mRNA expression in normal human tissues for SPARCL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SPARCL1 Gene

SOURCE GeneReport for Unigene cluster for SPARCL1 Gene Hs.62886

mRNA Expression by UniProt/SwissProt for SPARCL1 Gene

Q14515-SPRL1_HUMAN
Tissue specificity: Highly expressed in lymph node, brain, heart, lung, skeletal muscle, ovary, small intestine, and colon, with lower levels in placenta, pancreas, testis, spleen, and thymus, and no expression in kidney, liver, and peripheral blood leukocytes
genes like me logo Genes that share expressions with SPARCL1: view

Orthologs for SPARCL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for SPARCL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SPARCL1 36
  • 99 (n)
  • 97.89 (a)
SPARCL1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SPARCL1 36
  • 82.46 (n)
  • 74.46 (a)
SPARCL1 37
  • 74 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPARCL1 36
  • 85.47 (n)
  • 77.83 (a)
SPARCL1 37
  • 76 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sparcl1 36
  • 74.35 (n)
  • 66.77 (a)
Sparcl1 16
Sparcl1 37
  • 64 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPARCL1 37
  • 39 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sparcl1 36
  • 74.62 (n)
  • 66.51 (a)
chicken
(Gallus gallus)
Aves SPARCL1 37
  • 32 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii sparcl1 37
  • 33 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000305 36
  • 49.03 (n)
  • 38.71 (a)
fruit fly
(Drosophila melanogaster)
Insecta BM-40-SPARC 36
  • 47.78 (n)
  • 38.42 (a)
BM-40-SPARC 37
  • 29 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea ost-1 36
  • 53.88 (n)
  • 40.78 (a)
ost-1 37
  • 33 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 38 (a)
OneToMany
Species with no ortholog for SPARCL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for SPARCL1 Gene

ENSEMBL:
Gene Tree for SPARCL1 (if available)
TreeFam:
Gene Tree for SPARCL1 (if available)

Paralogs for SPARCL1 Gene

Paralogs for SPARCL1 Gene

Selected SIMAP similar genes for SPARCL1 Gene using alignment to 10 proteins:

genes like me logo Genes that share paralogs with SPARCL1: view

Variants for SPARCL1 Gene

Sequence variations from dbSNP and Humsavar for SPARCL1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs8342 -- 87,495,071(-) GCACC(C/T)GACAA synonymous-codon, reference, utr-variant-5-prime, intron-variant
rs9933 -- 87,480,464(-) ATTGA(C/G/T)CTTCT synonymous-codon, missense, reference
rs10626 -- 87,473,765(-) AGATT(A/T)TAAAG utr-variant-3-prime
rs13051 - 87,495,036(-) TGAAG(A/C)TGAAG missense, reference, utr-variant-5-prime, intron-variant
rs1031794 -- 87,530,030(+) CTGTG(C/T)TAACA upstream-variant-2KB

Relevant External Links for SPARCL1 Gene

HapMap Linkage Disequilibrium report
SPARCL1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SPARCL1 Gene

Disorders for SPARCL1 Gene

(7) Novoseek inferred disease relationships for SPARCL1 Gene

Disease -log(P) Hits PubMed IDs
pancreatic tumor 41.7 1
lung tumor 34.7 1
nsclc 30.6 5
tumors 4.74 11
inflammation 0 1

Relevant External Links for SPARCL1

Genetic Association Database (GAD)
SPARCL1
Human Genome Epidemiology (HuGE) Navigator
SPARCL1
genes like me logo Genes that share disorders with SPARCL1: view

No data available for UniProtKB/Swiss-Prot for SPARCL1 Gene

Publications for SPARCL1 Gene

  1. Cloning from purified high endothelial venule cells of hevin, a close relative of the antiadhesive extracellular matrix protein SPARC. (PMID: 7600298) Girard J.-P. … Springer T.A. (Immunity 1995) 2 3 4 23
  2. Modulation of endothelial cell adhesion by hevin, an acidic protein associated with high endothelial venules. (PMID: 8626806) Girard J.P. … Springer T.A. (J. Biol. Chem. 1996) 3 23
  3. SC1/hevin. An extracellular calcium-modulated protein that binds collagen I. (PMID: 12538579) Hambrock H.O. … Hartmann U. (J. Biol. Chem. 2003) 3 23
  4. Association analysis of schizophrenia on 18 genes involved in neuronal migration: MDGA1 as a new susceptibility gene. (PMID: 18384059) KAohler A.K. … Andreassen O.A. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2008) 3 49
  5. Sequential use of transcriptional profiling, expression quantitative trait mapping, and gene association implicates MMP20 in human kidney aging. (PMID: 19834535) Wheeler H.E. … Kim S.K. (PLoS Genet. 2009) 3 49

Products for SPARCL1 Gene

Sources for SPARCL1 Gene

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