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Aliases for SPANXF1 Gene

Aliases for SPANXF1 Gene

  • SPANX Family, Member F1 2
  • Nuclear-Associated Protein SPAN-Xb 4
  • Nuclear-Associated Protein SPAN-Xf 4
  • Cancer/Testis Antigen 11.2 4
  • SPANX Family Member B/F 4
  • SPANXB1 SPANXB2 SPANXF1 4
  • SPANX-B 4
  • SPANX-F 4
  • CT11.2 4
  • SPANXB 4

External Ids for SPANXF1 Gene

Summaries for SPANXF1 Gene

GeneCards Summary for SPANXF1 Gene

SPANXF1 (SPANX Family, Member F1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPANXF1 Gene

Genomics for SPANXF1 Gene

Genomic Location for SPANXF1 Gene

Orientation:
Unknown strand

Genomic View for SPANXF1 Gene

Cytogenetic band:

No data available for RefSeq DNA sequence and Regulatory Elements for SPANXF1 Gene

Proteins for SPANXF1 Gene

  • Protein details for SPANXF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NS25-SPNXB_HUMAN
    Recommended name:
    Sperm protein associated with the nucleus on the X chromosome B/F
    Protein Accession:
    Q9NS25
    Secondary Accessions:
    • B2RPP2
    • Q32WQ7
    • Q5JYZ7
    • Q8TAD5

    Protein attributes for SPANXF1 Gene

    Size:
    103 amino acids
    Molecular mass:
    11826 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPANXF1 Gene

Proteomics data for SPANXF1 Gene at MOPED

Post-translational modifications for SPANXF1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for SPANXF1 Gene

Domains for SPANXF1 Gene

Protein Domains for SPANXF1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SPANXF1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NS25

UniProtKB/Swiss-Prot:

SPNXB_HUMAN
Family:
  • Belongs to the SPAN-X family.:
    • Q9NS25
genes like me logo Genes that share domains with SPANXF1: view

No data available for Gene Families for SPANXF1 Gene

Function for SPANXF1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPANXF1 Gene

Localization for SPANXF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPANXF1 Gene

Cytoplasm. Nucleus. Note=Associated with nuclear craters.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPANXF1 Gene

Pathways for SPANXF1 Gene

SuperPathways for SPANXF1 Gene

No Data Available

Interacting Proteins for SPANXF1 Gene

Gene Ontology (GO) - Biological Process for SPANXF1 Gene

None

No data available for Pathways by source for SPANXF1 Gene

Transcripts for SPANXF1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SPANXF1 Gene

No ASD Table

Relevant External Links for SPANXF1 Gene

ECgene alternative splicing isoforms for
SPANXF1

No data available for mRNA/cDNA for SPANXF1 Gene

Expression for SPANXF1 Gene

mRNA expression in normal human tissues for SPANXF1 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for SPANXF1 Gene

mRNA Expression by UniProt/SwissProt for SPANXF1 Gene

Q9NS25-SPNXB_HUMAN
Tissue specificity: Detected in testis and sperm.
genes like me logo Genes that share expressions with SPANXF1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for SPANXF1 Gene

Orthologs for SPANXF1 Gene

No data available for Orthologs and Evolution for SPANXF1 Gene

Paralogs for SPANXF1 Gene

Selected SIMAP similar genes for SPANXF1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPANXF1: view

No data available for Paralogs for SPANXF1 Gene

Variants for SPANXF1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SPANXF1 Gene

Variant ID Type Subtype PubMed ID
dgv2481e1 CNV Complex 17122850
dgv2482e1 CNV Complex 17122850
dgv2483e1 CNV Complex 17122850
nsv433463 CNV Gain 18776910
nsv524931 CNV Gain 19592680
nsv7462 OTHER Inversion 18451855
nsv511087 CNV Complex 20534489
nsv508805 CNV Insertion 20534489
nsv510863 CNV Loss 20534489
nsv7123 CNV Loss 18451855
nsv9978 CNV Gain 18304495
nsv7124 CNV Insertion 18451855
nsv821600 CNV Deletion 20802225
esv1002958 CNV Loss 20482838
esv25300 CNV Gain+Loss 19812545
nsv499192 CNV Loss 21111241
nsv515176 CNV Complex 21397061

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Relevant External Links for SPANXF1 Gene

Disorders for SPANXF1 Gene

No disorders were found for SPANXF1 Gene.

No data available for UniProtKB/Swiss-Prot for SPANXF1 Gene

Publications for SPANXF1 Gene

  1. Spermatid-specific expression of the novel X-linked gene product SPAN-X localized to the nucleus of human spermatozoa. (PMID: 10906052) Westbrook V.A. … Herr J.C. (Biol. Reprod. 2000) 4
  2. The human SPANX multigene family: genomic organization, alignment and expression in male germ cells and tumor cell lines. (PMID: 12758128) Zendman A.J. … van Muijen G.N.P. (Gene 2003) 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4
  5. Dynamic structure of the SPANX gene cluster mapped to the prostate cancer susceptibility locus HPCX at Xq27. (PMID: 16251457) Kouprina N. … Larionov V. (Genome Res. 2005) 4

Products for SPANXF1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPANXF1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPANXF1
    • Block miRNA regulation of SPANXF1 using miScript Target Protectors

    Sources for SPANXF1 Gene

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