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Aliases for SPANXA2-OT1 Gene

Subcategory (RNA class) for SPANXA2-OT1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SPANXA2-OT1 Gene

  • SPANXA2 Overlapping Transcript 1 2 3
  • SPANXA2 Overlapping Transcript 1 (Non-Protein Coding) 2 3
  • CXorf18 3 4
  • Chromosome X Open Reading Frame 18 2

External Ids for SPANXA2-OT1 Gene

ORGUL Members for SPANXA2-OT1 Gene

Previous Symbols for SPANXA2-OT1 Gene

  • CXorf18

Summaries for SPANXA2-OT1 Gene

GeneCards Summary for SPANXA2-OT1 Gene

SPANXA2-OT1 (SPANXA2 Overlapping Transcript 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPANXA2-OT1 Gene

Genomics for SPANXA2-OT1 Gene

Genomic Location for SPANXA2-OT1 Gene

Start:
141,502,849 bp from pter
End:
141,649,939 bp from pter
Size:
147,091 bases
Orientation:
Plus strand

Genomic View for SPANXA2-OT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPANXA2-OT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPANXA2-OT1 Gene

No data available for Regulatory Elements for SPANXA2-OT1 Gene

Proteins for SPANXA2-OT1 Gene

  • Protein details for SPANXA2-OT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9U9-SPOT1_HUMAN
    Recommended name:
    Putative uncharacterized protein SPANXA2-OT1
    Protein Accession:
    Q8N9U9
    Secondary Accessions:

    Protein attributes for SPANXA2-OT1 Gene

    Size:
    137 amino acids
    Molecular mass:
    13254 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SPANXA2-OT1 Gene

Proteomics data for SPANXA2-OT1 Gene at MOPED

Post-translational modifications for SPANXA2-OT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPANXA2-OT1 Gene

Domains for SPANXA2-OT1 Gene

Gene Families for SPANXA2-OT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for SPANXA2-OT1 Gene

ProtoNet:
genes like me logo Genes that share domains with SPANXA2-OT1: view

No data available for UniProtKB/Swiss-Prot for SPANXA2-OT1 Gene

Function for SPANXA2-OT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPANXA2-OT1 Gene

Localization for SPANXA2-OT1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SPANXA2-OT1 Gene

Pathways for SPANXA2-OT1 Gene

SuperPathways for SPANXA2-OT1 Gene

No Data Available

Interacting Proteins for SPANXA2-OT1 Gene

Gene Ontology (GO) - Biological Process for SPANXA2-OT1 Gene

None

No data available for Pathways by source for SPANXA2-OT1 Gene

Transcripts for SPANXA2-OT1 Gene

mRNA/cDNA for SPANXA2-OT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPANXA2-OT1 Gene

SPANXA2 overlapping transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPANXA2-OT1 Gene

No ASD Table

Relevant External Links for SPANXA2-OT1 Gene

GeneLoc Exon Structure for
SPANXA2-OT1
ECgene alternative splicing isoforms for
SPANXA2-OT1

Expression for SPANXA2-OT1 Gene

mRNA expression in normal human tissues for SPANXA2-OT1 Gene

mRNA differential expression in normal tissues according to GTEx for SPANXA2-OT1 Gene

This gene is overexpressed in Testis (8.5), Artery - Aorta (6.9), and Artery - Tibial (4.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SPANXA2-OT1 Gene

SOURCE GeneReport for Unigene cluster for SPANXA2-OT1 Gene Hs.590784

genes like me logo Genes that share expressions with SPANXA2-OT1: view

Orthologs for SPANXA2-OT1 Gene

Evolution for SPANXA2-OT1 Gene

ENSEMBL:
Gene Tree for SPANXA2-OT1 (if available)
TreeFam:
Gene Tree for SPANXA2-OT1 (if available)

No data available for Orthologs for SPANXA2-OT1 Gene

Paralogs for SPANXA2-OT1 Gene

Selected SIMAP similar genes for SPANXA2-OT1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SPANXA2-OT1: view

No data available for Paralogs for SPANXA2-OT1 Gene

Variants for SPANXA2-OT1 Gene

Sequence variations from dbSNP and Humsavar for SPANXA2-OT1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs68210 -- 141,516,011(+) TAAGA(C/T)GTAGA intron-variant
rs176347 -- 141,559,097(+) tgagg(A/T)tatgc intron-variant
rs176348 -- 141,558,952(+) agata(C/T)gcaga intron-variant
rs176349 -- 141,558,861(+) tagtg(A/T)cttct intron-variant
rs176354 -- 141,557,688(-) TTGTA(C/T)TGTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPANXA2-OT1 Gene

Variant ID Type Subtype PubMed ID
dgv2483e1 CNV Complex 17122850
nsv7462 OTHER Inversion 18451855
nsv470367 CNV Loss 18288195
nsv516880 CNV Gain+Loss 19592680
dgv2485e1 CNV Complex 17122850
nsv470369 CNV Gain 18288195
esv2752315 CNV Gain 17911159
dgv2486e1 CNV Complex 17122850
esv23188 CNV Loss 19812545
essv9625 CNV CNV 17122850
nsv471606 CNV Gain 15918152
nsv469528 CNV Loss 16826518
nsv9983 CNV Gain 18304495
esv26320 CNV Gain+Loss 19812545
nsv515177 CNV Complex 21397061
nsv470371 CNV Gain 18288195

Relevant External Links for SPANXA2-OT1 Gene

HapMap Linkage Disequilibrium report
SPANXA2-OT1

Disorders for SPANXA2-OT1 Gene

No disorders were found for SPANXA2-OT1 Gene.

No data available for UniProtKB/Swiss-Prot for SPANXA2-OT1 Gene

Publications for SPANXA2-OT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SPANXA2-OT1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPANXA2-OT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPANXA2-OT1
    • Block miRNA regulation of SPANXA2-OT1 using miScript Target Protectors

    Sources for SPANXA2-OT1 Gene

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