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SPAG7 Gene

protein-coding   GIFtS: 50
GCID: GC17M004862

Sperm Associated Antigen 7

  Search for SPAG7
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Sperm Associated Antigen 71 2
ACRP2
FSA-12
Sperm-Associated Antigen 72

External Ids:    HGNC: 112161   Entrez Gene: 95522   Ensembl: ENSG000000916407   OMIM: 6100565   UniProtKB: O753913   

Export aliases for SPAG7 gene to outside databases

Previous GC identifers: GC17M005281 GC17M004807 GC17M005064 GC17M005065 GC17M004803


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPAG7 Gene:
SPAG7 (sperm associated antigen 7) is a protein-coding gene. GO annotations related to this gene include nucleic acid binding.

Gene Wiki entry for SPAG7 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NT_010718.17  NC_018928.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPAG7 gene promoter:
         E2F-4   E2F-3a   E2F-5   E2F-2   Nkx2-5   c-Ets-1   E47   E2F-1   E2F   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSPAG7 promoter sequence
   Search Chromatin IP Primers for SPAG7

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPAG7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17p13.2   Ensembl cytogenetic band:  17p13.2   HGNC cytogenetic band: 17p13.2

SPAG7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPAG7 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17M004862:  view genomic region     (about GC identifiers)

Start:
4,862,521 bp from pter      End:
4,871,167 bp from pter
Size:
8,647 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SPAG7_HUMAN, O75391 (See protein sequence)
Recommended Name: Sperm-associated antigen 7  
Size: 227 amino acids; 26034 Da
Sequence caution: Sequence=AAC39888.1; Type=Frameshift; Positions=227;
1 PDB 3D structure from and Proteopedia for SPAG7:
2CPM (3D)    
Secondary accessions: Q96EU5

Explore the universe of human proteins at neXtProt for SPAG7: NX_O75391

Explore proteomics data for SPAG7 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys173
  • Modification sites at PhosphoSitePlus

  • See SPAG7 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_004881.2  
    ENSEMBL proteins: 
     ENSP00000461145   ENSP00000206020   ENSP00000458405   ENSP00000458264  

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    Search eBioscience for ELISAs for SPAG7 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR001374 R3H_ss-bd
     IPR017330 Sperm-assoc_antigen_PAG7

    Graphical View of Domain Structure for InterPro Entry O75391

    ProtoNet protein and cluster: O75391

    UniProtKB/Swiss-Prot: SPAG7_HUMAN, O75391
    Similarity: Contains 1 R3H domain


    Find genes that share domains with SPAG7           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003676nucleic acid binding IEA--
         
    Find genes that share ontologies with SPAG7           About GenesLikeMe


    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for SPAG7
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       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SPAG7
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for SPAG7

    miRNA
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    miRTarBase miRNAs that target SPAG7:
    hsa-mir-615-3p (MIRT039877)

    Block miRNA regulation of human, mouse, rat SPAG7 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate SPAG7 (see all 15):
    hsa-miR-4283 hsa-miR-4271 hsa-miR-15a hsa-miR-4312 hsa-miR-503 hsa-miR-497 hsa-miR-646 hsa-miR-374c
    SwitchGear 3'UTR luciferase reporter plasmidSPAG7 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat SPAG7

    Gene Editing
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    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SPAG7

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    SPAG7_HUMAN, O75391: Nucleus (Potential)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    nucleus3
    cytosol2

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with SPAG7           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SPAG7
    Interactions:

        Search GeneGlobe Interaction Network for SPAG7

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    Selected Interacting proteins for SPAG7 (O753912, 3 ENSP000002060204) via UniProtKB, MINT, STRING, and/or I2D (see all 11)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ABHD16AO958702, 3, ENSP000003792824MINT-62606 MINT-62780 MINT-62704 I2D: score=5 STRING: ENSP00000379282
    ENSG00000236063O958702, 3, ENSP000004069654MINT-62606 MINT-62780 MINT-62704 I2D: score=5 STRING: ENSP00000406965
    ENSG00000206403O958702, 3MINT-62606 MINT-62780 MINT-62704 I2D: score=5 
    ENSG00000224552O958702, 3MINT-62606 MINT-62780 MINT-62704 I2D: score=5 
    ENSG00000230475O958702, 3MINT-62606 MINT-62780 MINT-62704 I2D: score=5 
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for SPAG7



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for SPAG7 gene: 
    NM_004890.2  

    Unigene Cluster for SPAG7:

    Sperm associated antigen 7
    Hs.90436  [show with all ESTs]
    Unigene Representative Sequence: AK123065
    8 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000575142(uc002gaf.3) ENST00000206020(uc002gae.3) ENST00000573366
    ENST00000575784 ENST00000572148 ENST00000573805 ENST00000571023 ENST00000570341

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate SPAG7 (see all 15):
    hsa-miR-4283 hsa-miR-4271 hsa-miR-15a hsa-miR-4312 hsa-miR-503 hsa-miR-497 hsa-miR-646 hsa-miR-374c
    SwitchGear 3'UTR luciferase reporter plasmidSPAG7 3' UTR sequence
    Inhib. RNA
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    OriGene RNAi products in human, mouse, rat for SPAG7
    Predesigned siRNA for gene silencing in human, mouse, rat SPAG7
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    GenScript: all cDNA clones in your preferred vector: SPAG7 (NM_004890)
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    Primer
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    OriGene qPCR primer pairs and template standards for SPAG7
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    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat SPAG7
      QuantiTect SYBR Green Assays in human, mouse, rat SPAG7
      QuantiFast Probe-based Assays in human, mouse, rat SPAG7

    Additional mRNA sequence: 

    AF047437.1 AK123065.1 AK312174.1 BC007819.2 BC011934.2 

    14 DOTS entries:

    DT.455275  DT.100793908  DT.65288760  DT.100793910  DT.121003011  DT.95142015  DT.97822216  DT.121002958 
    DT.40314292  DT.91822995  DT.91919206  DT.92433472  DT.92436079  DT.95142016 

    Selected AceView cDNA sequences (see all 201):

    BG740955 BU580900 AW419081 CR598182 AI367842 BM807898 AI651466 BQ679058 
    BU554186 BU930872 BG292237 BU616153 BX116693 BI820168 BG491414 BM743958 
    CD742666 BM552880 AI378846 BC011934 AJ709587 BM708592 BQ686758 BG114380 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for SPAG7 (see all 9)    About this scheme

    ExUns: 1a · 1b ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c
    SP1:              -     -     -     -     -     -     -                             -                                 
    SP2:              -     -     -     -     -     -     -                             -                                 
    SP3:              -     -     -     -     -     -     -                       -                                       
    SP4:                                -     -     -                                                                     
    SP5:              -     -     -     -     -     -     -                                                               


    ECgene alternative splicing isoforms for SPAG7

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    SPAG7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    SPAG7 Expression
    About this image

    SPAG7 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    SPAG7 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.90436

    UniProtKB/Swiss-Prot: SPAG7_HUMAN, O75391
    Tissue specificity: Detected in fetal brain

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SPAG7

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for SPAG7 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Spag71 , 5 sperm associated antigen 71, 5 91.78(n)1
    96.92(a)1
      11 (43.21 cM)5
    2168731  NM_172561.31  NP_766149.21 
     706637715 
    African clawed frog
    (Xenopus laevis)
    Amphibia CA982745.12   -- 78.28(n)    CA982745.1 
    zebrafish
    (Danio rerio)
    Actinopterygii zgc663972 similar to sperm associated antigen 7 79.02(n)   394100  BC054697.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG26081 CG2608 53.21(n)
    40.85(a)
      35323  NM_136198.4  NP_610042.1 


    ENSEMBL Gene Tree for SPAG7 (if available)
    TreeFam Gene Tree for SPAG7 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for SPAG7 (see all 217)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 17 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs72204431,2
    C,F--4862043(+) ccCGAT/CTGCAC 1 -- int11Minor allele frequency- C:0.03WA 118
    rs1435650321,2
    C--4862093(+) CACAGC/TGGCTC 1 -- int10--------
    rs1852201051,2
    --4862138(+) CGGGCA/GGATCA 1 -- int10--------
    rs20057241,2
    C,F--4862204(+) CTAAAC/TGTACA 1 -- int11Minor allele frequency- T:0.17NA 120
    rs1908567551,2
    --4862220(+) TTACCC/TGGGTG 1 -- int10--------
    rs1822390841,2
    --4862246(+) GTAGTC/GCCAGC 1 -- int10--------
    rs1114541291,2
    C,F--4862266(+) GGCTAC/AGGCAG 1 -- int11Minor allele frequency- A:0.50NA 2
    rs1489013371,2
    C--4862325(+) CACCAC/TTGCAC 1 -- int10--------
    rs1135139741,2
    C,F--4862345(+) GGCAAC/TAGAGA 1 -- int11Minor allele frequency- T:0.50CSA 2
    rs1872148201,2
    --4862410(+) GGCCAC/TCTTTA 1 -- int10--------

    HapMap Linkage Disequilibrium report for SPAG7 (4862521 - 4871167 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 4 variations for SPAG7:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv907620CNV Loss21882294
    nsv833350CNV Loss17160897
    nsv833349CNV Loss17160897
    nsv907619CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing SPAG7
    DNA2.0 Custom Variant and Variant Library Synthesis for SPAG7

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 610056    OMIM disorders: --

    2 diseases from the University of Copenhagen DISEASES database for SPAG7:
    Gastroparesis     Dyspepsia

    Find genes that share disorders with SPAG7           About GenesLikeMe


    Export disorders for SPAG7 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for SPAG7 gene, integrated from 10 sources (see all 16):
    (articles sorted by number of sources associating them with SPAG7)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full- length cDNA cloning. (PubMed id 9653160)1, 2, 3 Mao M.... Chen Z. (Proc. Natl. Acad. Sci. U.S.A. 1998)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. Cloning and characterization of a fox sperm protein FSA-1. (PubMed id 7624517)1, 2 Beaton S.... Bradley M.P. (Reprod. Fertil. Dev. 1994)
    4. Comparative large scale characterization of plant versus mammal proteins reveals similar and idiosyncratic N-I+-acetylation features. (PubMed id 22223895)2 Bienvenut W.V....Giglione C. (amp 2012)
    5. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
    6. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    7. A proteome-wide, quantitative survey of in vivo ubiquitylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (amp 2011)
    8. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    9. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (Sci. Signal. 2010)
    10. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PubMed id 19413330)2 Gauci S....Mohammed S. (Anal. Chem. 2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 9552 HGNC: 11216 AceView: SPAG7 Ensembl:ENSG00000091640 euGenes: HUgn9552
    ECgene: SPAG7 H-InvDB: SPAG7

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for SPAG7 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for SPAG7 gene:
    Search GeneIP for patents involving SPAG7

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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