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Aliases for SPAG5-AS1 Gene

Subcategory (RNA class) for SPAG5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPAG5-AS1 Gene

  • SPAG5 Antisense RNA 1 2 3 5
  • SPAG5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPAG5-AS1 Gene

Previous GeneCards Identifiers for SPAG5-AS1 Gene

  • GC17P026932
  • GC17P026937

Summaries for SPAG5-AS1 Gene

GeneCards Summary for SPAG5-AS1 Gene

SPAG5-AS1 (SPAG5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPAG5-AS1 Gene

Genomics for SPAG5-AS1 Gene

Regulatory Elements for SPAG5-AS1 Gene

Enhancers for SPAG5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F028500 1.3 FANTOM5 Ensembl ENCODE 11 -97.6 -97613 0.4 TBP MAX EBF1 ZIC2 RELA POLR2A EED ZNF207 CHD2 MAZ UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 KIAA0100 FOXN1 SPAG5 SEBOX TMEM97
GH17F028576 1.1 ENCODE 12 -21.6 -21589 1.6 HDGF PKNOX1 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 SP3 SP5 ENSG00000264577 SDF2 MIR4723 NUFIP2 SPAG5-AS1 SGK494 RPL23A KIAA0100 PHF12 UNC119
GH17F028660 1.1 ENCODE 11.1 +63.6 63636 3.5 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PROCA1 SNORD42A SNORD4B SGK494 SPAG5-AS1 NEK8 TLCD1 SPAG5 SDF2 ENSG00000265205
GH17F028494 0.8 ENCODE 11.2 -103.9 -103903 0.2 CTCF WRNIP1 EBF1 ZNF2 RAD21 HBP1 RELA ZBTB48 ZNF143 SMC3 UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 FOXN1 SLC13A2
GH17F028486 0.7 ENCODE 10.7 -110.4 -110446 2.7 CTCF HLF CEBPB CEBPG RAD21 RARA ZKSCAN1 HNF1A CEBPA SMAD4 UNC119 PIGS SLC46A1 SPAG5-AS1 SGK494 FOXN1 SLC13A2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SPAG5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001535078 310 1801 HDGF PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF263

Genomic Location for SPAG5-AS1 Gene

Chromosome:
17
Start:
28,598,790 bp from pter
End:
28,617,377 bp from pter
Size:
18,588 bases
Orientation:
Plus strand

Genomic View for SPAG5-AS1 Gene

Genes around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPAG5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPAG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPAG5-AS1 Gene

Proteins for SPAG5-AS1 Gene

Post-translational modifications for SPAG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPAG5-AS1 Gene

Domains & Families for SPAG5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Function for SPAG5-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPAG5-AS1 Gene

Localization for SPAG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPAG5-AS1 Gene

Pathways & Interactions for SPAG5-AS1 Gene

SuperPathways for SPAG5-AS1 Gene

No Data Available

Interacting Proteins for SPAG5-AS1 Gene

Gene Ontology (GO) - Biological Process for SPAG5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPAG5-AS1 Gene

Transcripts for SPAG5-AS1 Gene

mRNA/cDNA for SPAG5-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPAG5-AS1 Gene

SPAG5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPAG5-AS1 Gene

No ASD Table

Relevant External Links for SPAG5-AS1 Gene

GeneLoc Exon Structure for
SPAG5-AS1
ECgene alternative splicing isoforms for
SPAG5-AS1

Expression for SPAG5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SPAG5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPAG5-AS1 Gene:

Hs.743630
genes like me logo Genes that share expression patterns with SPAG5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPAG5-AS1 Gene

Orthologs for SPAG5-AS1 Gene

Evolution for SPAG5-AS1 Gene

ENSEMBL:
Gene Tree for SPAG5-AS1 (if available)
TreeFam:
Gene Tree for SPAG5-AS1 (if available)

No data available for Orthologs for SPAG5-AS1 Gene

Paralogs for SPAG5-AS1 Gene

No data available for Paralogs for SPAG5-AS1 Gene

Variants for SPAG5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPAG5-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111728083 -- 28,600,767(+) TATAT(A/T)TTTTT intron-variant, upstream-variant-2KB
rs111864735 -- 28,600,548(+) CTACA(C/T)TCCAG intron-variant, upstream-variant-2KB
rs112142084 -- 28,600,860(+) AGGGT(C/T)TTGCT intron-variant, upstream-variant-2KB
rs112164482 -- 28,612,846(+) AATCC(C/T)AGAAC intron-variant
rs112224881 -- 28,601,649(+) GACGG(C/G)GTTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPAG5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv482200 CNV loss 20164927
nsv1064087 CNV gain 25217958

Relevant External Links for SPAG5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPAG5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPAG5-AS1 Gene

Disorders for SPAG5-AS1 Gene

Relevant External Links for SPAG5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPAG5-AS1

No disorders were found for SPAG5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPAG5-AS1 Gene

Publications for SPAG5-AS1 Gene

No publications were found for SPAG5-AS1 Gene.

Products for SPAG5-AS1 Gene

Sources for SPAG5-AS1 Gene

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