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Aliases for SPAG5-AS1 Gene

Subcategory (RNA class) for SPAG5-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SPAG5-AS1 Gene

  • SPAG5 Antisense RNA 1 2 3
  • SPAG5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPAG5-AS1 Gene

ORGUL Members for SPAG5-AS1 Gene

Summaries for SPAG5-AS1 Gene

GeneCards Summary for SPAG5-AS1 Gene

SPAG5-AS1 (SPAG5 Antisense RNA 1) is an RNA Gene, and belongs to the lncRNA class.

fRNAdb sequence ontologies for SPAG5-AS1 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SPAG5-AS1 Gene

Genomics for SPAG5-AS1 Gene

Genomic Location for SPAG5-AS1 Gene

Start:
28,598,790 bp from pter
End:
28,617,377 bp from pter
Size:
18,588 bases
Orientation:
Plus strand

Genomic View for SPAG5-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPAG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPAG5-AS1 Gene

No data available for Regulatory Elements for SPAG5-AS1 Gene

Proteins for SPAG5-AS1 Gene

Post-translational modifications for SPAG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPAG5-AS1 Gene

Domains for SPAG5-AS1 Gene

Gene Families for SPAG5-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPAG5-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Function for SPAG5-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPAG5-AS1 Gene

Localization for SPAG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPAG5-AS1 Gene

Pathways for SPAG5-AS1 Gene

SuperPathways for SPAG5-AS1 Gene

No Data Available

Interacting Proteins for SPAG5-AS1 Gene

Gene Ontology (GO) - Biological Process for SPAG5-AS1 Gene

None

No data available for Pathways by source for SPAG5-AS1 Gene

Transcripts for SPAG5-AS1 Gene

mRNA/cDNA for SPAG5-AS1 Gene

(3) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPAG5-AS1 Gene

SPAG5 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SPAG5-AS1 Gene

No ASD Table

Relevant External Links for SPAG5-AS1 Gene

GeneLoc Exon Structure for
SPAG5-AS1
ECgene alternative splicing isoforms for
SPAG5-AS1

Expression for SPAG5-AS1 Gene

mRNA expression in normal human tissues for SPAG5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPAG5-AS1 Gene Hs.743630

genes like me logo Genes that share expressions with SPAG5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SPAG5-AS1 Gene

Orthologs for SPAG5-AS1 Gene

Evolution for SPAG5-AS1 Gene

ENSEMBL:
Gene Tree for SPAG5-AS1 (if available)
TreeFam:
Gene Tree for SPAG5-AS1 (if available)

No data available for Orthologs for SPAG5-AS1 Gene

Paralogs for SPAG5-AS1 Gene

No data available for Paralogs for SPAG5-AS1 Gene

Variants for SPAG5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPAG5-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs564070 -- 28,602,845(+) tggct(C/T)cccaa intron-variant
rs652884 -- 28,602,845(-) tggga(A/G)gccaa intron-variant
rs7215306 -- 28,603,520(+) tcgca(A/G)agggg intron-variant
rs7217274 -- 28,603,661(+) ttaac(A/G)agcat intron-variant
rs9890687 -- 28,601,345(+) tcacc(A/G)tgtta intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPAG5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv482200 CNV Loss 20164927

Relevant External Links for SPAG5-AS1 Gene

HapMap Linkage Disequilibrium report
SPAG5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Disorders for SPAG5-AS1 Gene

No disorders were found for SPAG5-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Publications for SPAG5-AS1 Gene

No publications were found for SPAG5-AS1 Gene.

Products for SPAG5-AS1 Gene

Sources for SPAG5-AS1 Gene

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