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Aliases for SPAG5-AS1 Gene

Subcategory (RNA class) for SPAG5-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPAG5-AS1 Gene

  • SPAG5 Antisense RNA 1 2 3 5
  • SPAG5 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SPAG5-AS1 Gene

Previous GeneCards Identifiers for SPAG5-AS1 Gene

  • GC17P026932
  • GC17P026937

Summaries for SPAG5-AS1 Gene

GeneCards Summary for SPAG5-AS1 Gene

SPAG5-AS1 (SPAG5 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPAG5-AS1 Gene

Genomics for SPAG5-AS1 Gene

Regulatory Elements for SPAG5-AS1 Gene

Enhancers for SPAG5-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G028660 1.4 ENCODE dbSUPER 11.1 +63.6 63636 3.5 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 PROCA1 SNORD42A SNORD4B SGK494 SPAG5-AS1 NEK8 TLCD1 SPAG5 SDF2 ENSG00000265205
GH17G028576 1.1 ENCODE 12 -21.6 -21589 1.6 HDGF PKNOX1 MLX ARID4B DMAP1 YY1 SLC30A9 ZNF143 ZNF207 SP3 ENSG00000264577 SDF2 TMEM199 NUFIP2 SPAG5-AS1 SGK494 RPL23A KIAA0100 PHF12 UNC119
GH17G028500 1.1 FANTOM5 ENCODE 11 -97.7 -97661 0.4 TBP BACH1 MAX EBF1 ZIC2 RELA FOXK2 POLR2A EED ZNF207 UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 KIAA0100 FOXN1 SPAG5 SEBOX TMEM97
GH17G028494 0.8 ENCODE 11.3 -103.9 -103903 0.2 CTCF RB1 WRNIP1 EBF1 ZNF2 HBP1 RAD21 RELA CTBP1 ZBTB48 UNC119 PIGS SPAG5-AS1 SGK494 SLC46A1 FOXN1 SLC13A2
GH17G028507 0.8 ENCODE dbSUPER 10.8 -90.8 -90764 0.8 ZNF747 KDM1A EBF1 PRDM1 FOXN1 PIGS SPAG5-AS1 SGK494 SLC46A1 GC17P028538
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SPAG5-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000092746 310 1801 HDGF PKNOX1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 FOS

Genomic Location for SPAG5-AS1 Gene

Chromosome:
17
Start:
28,598,790 bp from pter
End:
28,617,377 bp from pter
Size:
18,588 bases
Orientation:
Plus strand

Genomic View for SPAG5-AS1 Gene

Genes around SPAG5-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPAG5-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPAG5-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPAG5-AS1 Gene

Proteins for SPAG5-AS1 Gene

Post-translational modifications for SPAG5-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPAG5-AS1 Gene

Domains & Families for SPAG5-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPAG5-AS1 Gene

Function for SPAG5-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPAG5-AS1 Gene

Localization for SPAG5-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPAG5-AS1 Gene

Pathways & Interactions for SPAG5-AS1 Gene

SuperPathways for SPAG5-AS1 Gene

No Data Available

Interacting Proteins for SPAG5-AS1 Gene

Gene Ontology (GO) - Biological Process for SPAG5-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPAG5-AS1 Gene

Drugs & Compounds for SPAG5-AS1 Gene

No Compound Related Data Available

Transcripts for SPAG5-AS1 Gene

mRNA/cDNA for SPAG5-AS1 Gene

(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SPAG5-AS1 Gene

SPAG5 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPAG5-AS1 Gene

No ASD Table

Relevant External Links for SPAG5-AS1 Gene

GeneLoc Exon Structure for
SPAG5-AS1
ECgene alternative splicing isoforms for
SPAG5-AS1

Expression for SPAG5-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPAG5-AS1 Gene

SOURCE GeneReport for Unigene cluster for SPAG5-AS1 Gene:

Hs.743630
genes like me logo Genes that share expression patterns with SPAG5-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPAG5-AS1 Gene

Orthologs for SPAG5-AS1 Gene

Evolution for SPAG5-AS1 Gene

ENSEMBL:
Gene Tree for SPAG5-AS1 (if available)
TreeFam:
Gene Tree for SPAG5-AS1 (if available)

No data available for Orthologs for SPAG5-AS1 Gene

Paralogs for SPAG5-AS1 Gene

No data available for Paralogs for SPAG5-AS1 Gene

Variants for SPAG5-AS1 Gene

Sequence variations from dbSNP and Humsavar for SPAG5-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000006500 -- 28,597,416(+) CCGTC(A/T)CAAAA intron-variant, upstream-variant-2KB
rs1000204971 -- 28,597,192(+) CGGGC(A/G)GACCA intron-variant, upstream-variant-2KB
rs1000309994 -- 28,603,985(+) GACGG(G/T)GTGGT intron-variant
rs1000450802 -- 28,609,748(+) AAAAA(A/G)AAAAA intron-variant, utr-variant-3-prime
rs1000479887 -- 28,610,299(+) AGGGC(C/T)AGCTG intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SPAG5-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1064087 CNV gain 25217958
nsv482200 CNV loss 20164927

Relevant External Links for SPAG5-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPAG5-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPAG5-AS1 Gene

Disorders for SPAG5-AS1 Gene

Relevant External Links for SPAG5-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPAG5-AS1

No disorders were found for SPAG5-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPAG5-AS1 Gene

Publications for SPAG5-AS1 Gene

No publications were found for SPAG5-AS1 Gene.

Products for SPAG5-AS1 Gene

Sources for SPAG5-AS1 Gene

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