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Aliases for SPAG17 Gene

Aliases for SPAG17 Gene

  • Sperm Associated Antigen 17 2 3
  • Projection Protein PF6 Homolog 3 4
  • CT143 3
  • PF6 3

External Ids for SPAG17 Gene

Previous GeneCards Identifiers for SPAG17 Gene

  • GC01M118209
  • GC01M118297
  • GC01M118496
  • GC01M116352

Summaries for SPAG17 Gene

GeneCards Summary for SPAG17 Gene

SPAG17 (Sperm Associated Antigen 17) is a Protein Coding gene.

UniProtKB/Swiss-Prot for SPAG17 Gene

  • Seems to be important for the structural integrity of the central apparatus of the sperm axoneme.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPAG17 Gene

Genomics for SPAG17 Gene

Regulatory Elements for SPAG17 Gene

Genomic Location for SPAG17 Gene

Chromosome:
1
Start:
117,953,665 bp from pter
End:
118,185,225 bp from pter
Size:
231,561 bases
Orientation:
Minus strand

Genomic View for SPAG17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPAG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPAG17 Gene

Proteins for SPAG17 Gene

  • Protein details for SPAG17 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6Q759-SPG17_HUMAN
    Recommended name:
    Sperm-associated antigen 17
    Protein Accession:
    Q6Q759
    Secondary Accessions:
    • Q8NAZ1
    • Q9NT21

    Protein attributes for SPAG17 Gene

    Size:
    2223 amino acids
    Molecular mass:
    251742 Da
    Quaternary structure:
    • Interacts (via the C-terminus) with SPAG6; the interaction probably occurs on polymerized microtubules.

neXtProt entry for SPAG17 Gene

Proteomics data for SPAG17 Gene at MOPED

Post-translational modifications for SPAG17 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SPAG17 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SPAG17 Gene

Domains & Families for SPAG17 Gene

Protein Domains for SPAG17 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SPAG17: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SPAG17 Gene

Function for SPAG17 Gene

Molecular function for SPAG17 Gene

UniProtKB/Swiss-Prot Function:
Seems to be important for the structural integrity of the central apparatus of the sperm axoneme.

Gene Ontology (GO) - Molecular Function for SPAG17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SPAG17: view

Phenotypes for SPAG17 Gene

GenomeRNAi human phenotypes for SPAG17:
genes like me logo Genes that share phenotypes with SPAG17: view

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPAG17 Gene

Localization for SPAG17 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPAG17 Gene

Cytoplasm. Cytoplasm, cytoskeleton, flagellum axoneme. Note=Detected in the cytoplasm of round spermatids and in condensing spermatids. Localized to the central pair of the sperm flagellar axoneme. Colocalizes with SPAG6 on microtubules (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SPAG17 Gene COMPARTMENTS Subcellular localization image for SPAG17 gene
Compartment Confidence
nucleus 4
cytoskeleton 3
cytosol 2
endosome 1
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for SPAG17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0005737 cytoplasm IDA --
GO:0005874 microtubule IEA --
GO:0031514 motile cilium IEA --
GO:1990716 axonemal central apparatus IEA --
genes like me logo Genes that share ontologies with SPAG17: view

Pathways & Interactions for SPAG17 Gene

SuperPathways for SPAG17 Gene

No Data Available

Interacting Proteins for SPAG17 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000337804%0d%0a9606.ENSP00000365811%0d%0a9606.ENSP00000334373%0d%0a
Selected Interacting proteins: Q6Q759-SPG17_HUMAN ENSP00000337804 for SPAG17 Gene via I2D STRING

Gene Ontology (GO) - Biological Process for SPAG17 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003341 cilium movement IEA --
GO:0035082 axoneme assembly IEA --
genes like me logo Genes that share ontologies with SPAG17: view

No data available for Pathways by source and SIGNOR curated interactions for SPAG17 Gene

Drugs & Compounds for SPAG17 Gene

No Compound Related Data Available

Transcripts for SPAG17 Gene

Unigene Clusters for SPAG17 Gene

Sperm associated antigen 17:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPAG17

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPAG17 Gene

No ASD Table

Relevant External Links for SPAG17 Gene

GeneLoc Exon Structure for
SPAG17
ECgene alternative splicing isoforms for
SPAG17

Expression for SPAG17 Gene

mRNA expression in normal human tissues for SPAG17 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SPAG17 Gene

This gene is overexpressed in Testis (x11.9), Esophagus - Mucosa (x4.9), and Pituitary (x4.4).

Protein differential expression in normal tissues from HIPED for SPAG17 Gene

This gene is overexpressed in Cerebrospinal fluid (42.1), Heart (13.0), and Monocytes (7.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SPAG17 Gene



SOURCE GeneReport for Unigene cluster for SPAG17 Gene Hs.528821

mRNA Expression by UniProt/SwissProt for SPAG17 Gene

Q6Q759-SPG17_HUMAN
Tissue specificity: Highly expressed in testis. Expressed in organs that contain cilia-bearing cells including brain, oviduct, lung, and uterus.
genes like me logo Genes that share expression patterns with SPAG17: view

Protein tissue co-expression partners for SPAG17 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

Orthologs for SPAG17 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SPAG17 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SPAG17 35
  • 84.75 (n)
  • 79.66 (a)
SPAG17 36
  • 79 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SPAG17 35
  • 85.79 (n)
  • 80.54 (a)
SPAG17 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Spag17 35
  • 78.87 (n)
  • 73.3 (a)
Spag17 16
Spag17 36
  • 70 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SPAG17 35
  • 99.13 (n)
  • 98.56 (a)
SPAG17 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Spag17 35
  • 79.1 (n)
  • 73.97 (a)
oppossum
(Monodelphis domestica)
Mammalia SPAG17 36
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SPAG17 36
  • 47 (a)
OneToOne
chicken
(Gallus gallus)
Aves SPAG17 35
  • 60.1 (n)
  • 50.94 (a)
SPAG17 36
  • 44 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SPAG17 36
  • 47 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100170502 35
  • 54.56 (n)
  • 47.43 (a)
zebrafish
(Danio rerio)
Actinopterygii si:dkey-208b23.5 35
  • 51.5 (n)
  • 41.14 (a)
SPAG17 36
  • 40 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 33 (a)
OneToOne
Species with no ortholog for SPAG17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SPAG17 Gene

ENSEMBL:
Gene Tree for SPAG17 (if available)
TreeFam:
Gene Tree for SPAG17 (if available)

Paralogs for SPAG17 Gene

No data available for Paralogs for SPAG17 Gene

Variants for SPAG17 Gene

Sequence variations from dbSNP and Humsavar for SPAG17 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs34321491 -- 118,131,614(+) GATAA(-/T)TTTTT intron-variant
rs34370925 -- 117,984,201(+) ATGGG(-/A)AAGGT intron-variant
rs34386846 -- 118,070,038(+) TAAAC(-/T)TTTCA intron-variant
rs34393315 -- 118,121,172(+) AACTT(-/C)CCCCT intron-variant
rs34417284 -- 118,050,830(+) GTTCT(-/G)GGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SPAG17 Gene

Variant ID Type Subtype PubMed ID
nsv528470 CNV Loss 19592680
esv34191 CNV Loss 18971310
esv2716696 CNV Deletion 23290073
nsv872167 CNV Loss 21882294
esv2608205 CNV Deletion 19546169
esv5742 CNV Gain 19470904
esv2716707 CNV Deletion 23290073

Variation tolerance for SPAG17 Gene

Residual Variation Intolerance Score: 94.55% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 16.53; 97.78% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SPAG17 Gene

HapMap Linkage Disequilibrium report
SPAG17
Human Gene Mutation Database (HGMD)
SPAG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SPAG17 Gene

Disorders for SPAG17 Gene

Relevant External Links for SPAG17

Genetic Association Database (GAD)
SPAG17
Human Genome Epidemiology (HuGE) Navigator
SPAG17
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPAG17
genes like me logo Genes that share disorders with SPAG17: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPAG17 Gene

Publications for SPAG17 Gene

  1. Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. (PMID: 25429064) He M. … Qi L. (Hum. Mol. Genet. 2015) 67
  2. A novel common variant in DCST2 is associated with length in early life and height in adulthood. (PMID: 25281659) van der Valk R.J. … Jaddoe V.W. (Hum. Mol. Genet. 2015) 67
  3. Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. (PMID: 23563607) Berndt S.I. … Ingelsson E. (Nat. Genet. 2013) 67
  4. A genome-wide association study identifies two risk loci for congenital heart malformations in Han Chinese populations. (PMID: 23708190) Hu Z. … Shen H. (Nat. Genet. 2013) 67
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 67

Products for SPAG17 Gene

Sources for SPAG17 Gene

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