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Aliases for SPACA6P-AS Gene

Subcategory (RNA class) for SPACA6P-AS Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SPACA6P-AS Gene

  • SPACA6P Antisense RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1129 2 3
  • LINC01129 3

External Ids for SPACA6P-AS Gene

Previous HGNC Symbols for SPACA6P-AS Gene

  • LINC01129

Previous GeneCards Identifiers for SPACA6P-AS Gene

  • GC19M052193

Summaries for SPACA6P-AS Gene

GeneCards Summary for SPACA6P-AS Gene

SPACA6P-AS (SPACA6P Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPACA6P-AS Gene

Genomics for SPACA6P-AS Gene

Regulatory Elements for SPACA6P-AS Gene

Enhancers for SPACA6P-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19G051393 1.5 FANTOM5 ENCODE 32.1 +298.4 298409 2.8 HDGF PKNOX1 CREB3L1 ARNT WRNIP1 ZFP64 ARID4B SIN3A YY1 ZNF143 ZNF766 ZNF577 SPACA6P-AS ZNF836 C19orf84 ZNF432 ZNF616 ZNF880 ENSG00000268015 ZNF175
GH19G051687 1.8 FANTOM5 ENCODE dbSUPER 15.5 +3.0 2966 6.9 CREB3L1 DMAP1 FEZF1 YY1 ZNF143 ZNF263 SP3 NFYC MEF2D ZNF610 ZNF808 ZNF836 ZNF616 ZNF841 ZNF137P ENSG00000268970 ZNF766 ENSG00000269825 ZNF528 ZNF175
GH19G052137 1.4 FANTOM5 ENCODE 19.8 -446.2 -446176 3.3 PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 ZNF808 ZNF137P ENSG00000268970 ZNF816 ZNF350 ZNF836 ZNF600 ZNF468 ZNF616 ZNF841
GH19G050890 1.3 ENCODE dbSUPER 19.8 +802.3 802304 1.0 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A YY1 ZNF143 FOS KLF13 SPACA6P-AS KLK4 NUP62 LINC01869 SNORD88C C19orf48 KLK15 KLK1 ZNF577 POLD1
GH19G052598 1.3 Ensembl ENCODE 19.8 -907.2 -907154 4.1 HDGF PKNOX1 ARNT AGO1 ARID4B SIN3A DMAP1 YY1 CBX5 ZNF143 SPACA6P-AS ZNF528 ZNF137P ZNF83 ENSG00000269349 ENSG00000268970 ENSG00000269825
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for SPACA6P-AS Gene

51,685,363 bp from pter
51,693,456 bp from pter
8,094 bases
Minus strand

Genomic View for SPACA6P-AS Gene

Genes around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPACA6P-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPACA6P-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPACA6P-AS Gene

Proteins for SPACA6P-AS Gene

Post-translational modifications for SPACA6P-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P-AS Gene

Domains & Families for SPACA6P-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPACA6P-AS Gene

Function for SPACA6P-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P-AS Gene

Localization for SPACA6P-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPACA6P-AS Gene

Pathways & Interactions for SPACA6P-AS Gene

SuperPathways for SPACA6P-AS Gene

No Data Available

Interacting Proteins for SPACA6P-AS Gene

Gene Ontology (GO) - Biological Process for SPACA6P-AS Gene


No data available for Pathways by source and SIGNOR curated interactions for SPACA6P-AS Gene

Drugs & Compounds for SPACA6P-AS Gene

No Compound Related Data Available

Transcripts for SPACA6P-AS Gene


(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P-AS Gene

No ASD Table

Relevant External Links for SPACA6P-AS Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SPACA6P-AS Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SPACA6P-AS Gene

mRNA differential expression in normal tissues according to GTEx for SPACA6P-AS Gene

This gene is overexpressed in Testis (x5.9) and Adipose - Visceral (Omentum) (x5.3).
genes like me logo Genes that share expression patterns with SPACA6P-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SPACA6P-AS Gene

Orthologs for SPACA6P-AS Gene

Evolution for SPACA6P-AS Gene

Gene Tree for SPACA6P-AS (if available)
Gene Tree for SPACA6P-AS (if available)

No data available for Orthologs for SPACA6P-AS Gene

Paralogs for SPACA6P-AS Gene

No data available for Paralogs for SPACA6P-AS Gene

Variants for SPACA6P-AS Gene

Sequence variations from dbSNP and Humsavar for SPACA6P-AS Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000093001 -- 51,690,919(+) GGGGG(-/A)CGGGG intron-variant, upstream-variant-2KB
rs1000157128 -- 51,687,100(+) CTACA(C/G)AATAC nc-transcript-variant, upstream-variant-2KB
rs1000530637 -- 51,689,380(+) GGACC(-/GCAGAGCCGGGG)AGGAG intron-variant, upstream-variant-2KB
rs1000530929 -- 51,692,052(+) ATTGT(A/G)GCTGT intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1000601776 -- 51,689,191(+) CTCCC(G/T)CTCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPACA6P-AS Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv953608 CNV deletion 24416366
nsv9742 CNV gain+loss 18304495

Relevant External Links for SPACA6P-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPACA6P-AS Gene

Disorders for SPACA6P-AS Gene

Relevant External Links for SPACA6P-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SPACA6P-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P-AS Gene

Publications for SPACA6P-AS Gene

No publications were found for SPACA6P-AS Gene.

Products for SPACA6P-AS Gene

Sources for SPACA6P-AS Gene

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