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Aliases for SPACA6P-AS Gene

Subcategory (RNA class) for SPACA6P-AS Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SPACA6P-AS Gene

  • SPACA6P Antisense RNA 2 3 5
  • Long Intergenic Non-Protein Coding RNA 1129 2 3
  • LINC01129 3

External Ids for SPACA6P-AS Gene

Previous HGNC Symbols for SPACA6P-AS Gene

  • LINC01129

Previous GeneCards Identifiers for SPACA6P-AS Gene

  • GC19M052193

Summaries for SPACA6P-AS Gene

GeneCards Summary for SPACA6P-AS Gene

SPACA6P-AS (SPACA6P Antisense RNA) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPACA6P-AS Gene

Genomics for SPACA6P-AS Gene

Regulatory Elements for SPACA6P-AS Gene

Enhancers for SPACA6P-AS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F051687 1 FANTOM5 ENCODE 15.5 +3.0 2966 6.9 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 ZNF808 ZNF137P ENSG00000268970 ZNF836 ENSG00000269825 ZNF841 ZNF616 ZNF577 ZNF350 ZNF766
GH19F051393 1 FANTOM5 ENCODE 11.9 +298.4 298409 2.8 HDGF PKNOX1 ARNT WRNIP1 ZFP64 ARID4B SIN3A ZNF143 FOS KLF13 ZNF616 ZNF577 ZNF766 ZNF432 ZNF841 ZNF836 ZNF175 CTU1 ZNF350 C19orf84
GH19F051570 0.9 FANTOM5 ENCODE 10 +121.2 121229 3.6 HDGF PKNOX1 ARNT CREB3L1 SIN3A ARID4B ZNF2 YY1 ZNF143 FOS ZNF175 ZNF480 SIGLEC14 SIGLEC5 RPL7P51 CEACAM18 ZNF808 SIGLEC8 SPACA6P-AS FPR3
GH19F051608 0.6 ENCODE 10 +85.3 85324 0.2 ATF1 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 ELK1 ZNF175 LOC100419835 ZNF836 CTU1 SPACA6P-AS ZNF528 PIR37863 RPL9P33
GH19F051545 1.5 FANTOM5 Ensembl ENCODE 10 +143.6 143642 8.1 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF175 SIGLEC14 SIGLEC6 SIGLEC5 SIGLEC8 CEACAM18 ENSG00000269102 SIGLEC12 RPL7P51 LOC100419835
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Genomic Location for SPACA6P-AS Gene

Chromosome:
19
Start:
51,685,363 bp from pter
End:
51,693,456 bp from pter
Size:
8,094 bases
Orientation:
Minus strand

Genomic View for SPACA6P-AS Gene

Genes around SPACA6P-AS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SPACA6P-AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SPACA6P-AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPACA6P-AS Gene

Proteins for SPACA6P-AS Gene

Post-translational modifications for SPACA6P-AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P-AS Gene

Domains & Families for SPACA6P-AS Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPACA6P-AS Gene

Function for SPACA6P-AS Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P-AS Gene

Localization for SPACA6P-AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPACA6P-AS Gene

Pathways & Interactions for SPACA6P-AS Gene

SuperPathways for SPACA6P-AS Gene

No Data Available

Interacting Proteins for SPACA6P-AS Gene

Gene Ontology (GO) - Biological Process for SPACA6P-AS Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPACA6P-AS Gene

Transcripts for SPACA6P-AS Gene

mRNA/cDNA for SPACA6P-AS Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P-AS Gene

No ASD Table

Relevant External Links for SPACA6P-AS Gene

GeneLoc Exon Structure for
SPACA6P-AS
ECgene alternative splicing isoforms for
SPACA6P-AS

Expression for SPACA6P-AS Gene

mRNA expression in normal human tissues for SPACA6P-AS Gene

mRNA differential expression in normal tissues according to GTEx for SPACA6P-AS Gene

This gene is overexpressed in Testis (x5.9) and Adipose - Visceral (Omentum) (x5.3).
genes like me logo Genes that share expression patterns with SPACA6P-AS: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SPACA6P-AS Gene

Orthologs for SPACA6P-AS Gene

Evolution for SPACA6P-AS Gene

ENSEMBL:
Gene Tree for SPACA6P-AS (if available)
TreeFam:
Gene Tree for SPACA6P-AS (if available)

No data available for Orthologs for SPACA6P-AS Gene

Paralogs for SPACA6P-AS Gene

No data available for Paralogs for SPACA6P-AS Gene

Variants for SPACA6P-AS Gene

Sequence variations from dbSNP and Humsavar for SPACA6P-AS Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10404453 -- 51,693,235(+) CTACC(A/G)GGCCA intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-5-prime
rs10405559 -- 51,687,867(+) TCCCG(C/T)CCACA nc-transcript-variant, upstream-variant-2KB
rs10410246 -- 51,685,049(+) GTGCC(A/G)CCTGT downstream-variant-500B
rs10689461 -- 51,694,076(+) CACTC(-/AG)GGGAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11084108 -- 51,687,306(+) ACATA(A/C)GCAAA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SPACA6P-AS Gene

Variant ID Type Subtype PubMed ID
esv2758767 CNV gain+loss 17122850
nsv1140251 OTHER inversion 24896259
nsv953608 CNV deletion 24416366
nsv9742 CNV gain+loss 18304495

Relevant External Links for SPACA6P-AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SPACA6P-AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SPACA6P-AS Gene

Disorders for SPACA6P-AS Gene

Relevant External Links for SPACA6P-AS

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPACA6P-AS

No disorders were found for SPACA6P-AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P-AS Gene

Publications for SPACA6P-AS Gene

No publications were found for SPACA6P-AS Gene.

Products for SPACA6P-AS Gene

Sources for SPACA6P-AS Gene

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