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Aliases for SPACA6P Gene

Aliases for SPACA6P Gene

  • Sperm Acrosome Associated 6, Pseudogene 2 3
  • Long Intergenic Non-Protein Coding RNA 85 2 3
  • Sperm Acrosome Associated 6 2
  • Non-Protein Coding RNA 85 2
  • BACHELOR-Like Protein 3
  • NCRNA00085 3
  • LINC00085 3
  • SPACA6 3

External Ids for SPACA6P Gene

Previous HGNC Symbols for SPACA6P Gene

  • NCRNA00085
  • LINC00085

Previous GeneCards Identifiers for SPACA6P Gene

  • GC19P052223

Summaries for SPACA6P Gene

GeneCards Summary for SPACA6P Gene

SPACA6P (Sperm Acrosome Associated 6, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPACA6P Gene

Genomics for SPACA6P Gene

Genomic Location for SPACA6P Gene

Start:
51,693,340 bp from pter
End:
51,712,387 bp from pter
Size:
19,048 bases
Orientation:
Plus strand

Genomic View for SPACA6P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPACA6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPACA6P Gene

No data available for Regulatory Elements for SPACA6P Gene

Proteins for SPACA6P Gene

Post-translational modifications for SPACA6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P Gene

Domains for SPACA6P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SPACA6P Gene

Function for SPACA6P Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPACA6P

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SPACA6P Gene

Localization for SPACA6P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPACA6P Gene

Pathways for SPACA6P Gene

SuperPathways for SPACA6P Gene

No Data Available

Interacting Proteins for SPACA6P Gene

Gene Ontology (GO) - Biological Process for SPACA6P Gene

None

No data available for Pathways by source for SPACA6P Gene

Transcripts for SPACA6P Gene

mRNA/cDNA for SPACA6P Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SPACA6P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SPACA6P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P Gene

No ASD Table

Relevant External Links for SPACA6P Gene

GeneLoc Exon Structure for
SPACA6P
ECgene alternative splicing isoforms for
SPACA6P

Expression for SPACA6P Gene

mRNA expression in normal human tissues for SPACA6P Gene

genes like me logo Genes that share expressions with SPACA6P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SPACA6P Gene

Orthologs for SPACA6P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SPACA6P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Ncrna00085 16
Species with no ortholog for SPACA6P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPACA6P Gene

ENSEMBL:
Gene Tree for SPACA6P (if available)
TreeFam:
Gene Tree for SPACA6P (if available)

Paralogs for SPACA6P Gene

No data available for Paralogs for SPACA6P Gene

Variants for SPACA6P Gene

Sequence variations from dbSNP and Humsavar for SPACA6P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2122893 -- 51,702,179(+) TGATC(C/T)GGCCC intron-variant
rs2167416 -- 51,700,169(+) GAATC(A/G)CTTGA intron-variant
rs2167417 -- 51,700,205(+) GCCAA(G/T)ATCAC intron-variant
rs2167418 -- 51,701,689(+) GCTGC(A/G)GAGAA nc-transcript-variant
rs2290282 -- 51,702,357(+) TCCCC(A/G)TCAGG intron-variant

Relevant External Links for SPACA6P Gene

HapMap Linkage Disequilibrium report
SPACA6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SPACA6P Gene

Disorders for SPACA6P Gene

No disorders were found for SPACA6P Gene.

No data available for UniProtKB/Swiss-Prot for SPACA6P Gene

Publications for SPACA6P Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  4. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for SPACA6P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SPACA6P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SPACA6P
    • Block miRNA regulation of SPACA6P using miScript Target Protectors

    Sources for SPACA6P Gene

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