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Aliases for SPACA6P Gene

Subcategory (RNA class) for SPACA6P Gene

ncRNA

Quality Score for this RNA gene is

3

Aliases for SPACA6P Gene

  • Sperm Acrosome Associated 6, Pseudogene 2 3
  • Long Intergenic Non-Protein Coding RNA 85 2 3
  • BACHELOR-Like Protein 3 4
  • Let-7e Host 2 3
  • SPACA6 3 4
  • Sperm Acrosome Associated 6 2
  • Non-Protein Coding RNA 85 2
  • NCRNA00085 3
  • LINC00085 3
  • LET7EH 3

External Ids for SPACA6P Gene

Previous HGNC Symbols for SPACA6P Gene

  • NCRNA00085
  • LINC00085

Previous GeneCards Identifiers for SPACA6P Gene

  • GC19P052223
  • GC19P051696

Summaries for SPACA6P Gene

GeneCards Summary for SPACA6P Gene

SPACA6P (Sperm Acrosome Associated 6, Pseudogene) is an RNA Gene, and is affiliated with the ncRNA class.

UniProtKB/Swiss-Prot for SPACA6P Gene

  • Sperm protein potentially involved sperm-egg fusion.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SPACA6P Gene

Genomics for SPACA6P Gene

Genomic Location for SPACA6P Gene

Chromosome:
19
Start:
51,693,340 bp from pter
End:
51,712,387 bp from pter
Size:
19,048 bases
Orientation:
Plus strand

Genomic View for SPACA6P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SPACA6P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SPACA6P Gene

No data available for Regulatory Elements for SPACA6P Gene

Proteins for SPACA6P Gene

  • Protein details for SPACA6P Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    W5XKT8-SACA6_HUMAN
    Recommended name:
    Sperm acrosome membrane-associated protein 6
    Protein Accession:
    W5XKT8
    Secondary Accessions:
    • C0H5Y6
    • Q6UWG3

    Protein attributes for SPACA6P Gene

    Size:
    324 amino acids
    Molecular mass:
    36333 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SPACA6P Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SPACA6P Gene

Proteomics data for SPACA6P Gene at MOPED

Post-translational modifications for SPACA6P Gene

No Post-translational modifications

No data available for DME Specific Peptides for SPACA6P Gene

Domains & Families for SPACA6P Gene

Protein Domains for SPACA6P Gene

Graphical View of Domain Structure for InterPro Entry

W5XKT8

UniProtKB/Swiss-Prot:

SACA6_HUMAN :
  • Contains 1 Ig-like (immunoglobulin-like) domain.
Domain:
  • Contains 1 Ig-like (immunoglobulin-like) domain.
genes like me logo Genes that share domains with SPACA6P: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SPACA6P Gene

Function for SPACA6P Gene

Molecular function for SPACA6P Gene

UniProtKB/Swiss-Prot Function:
Sperm protein potentially involved sperm-egg fusion.

Phenotypes for SPACA6P Gene

GenomeRNAi human phenotypes for SPACA6P:
genes like me logo Genes that share phenotypes with SPACA6P: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SPACA6P Gene

Localization for SPACA6P Gene

Subcellular locations from UniProtKB/Swiss-Prot for SPACA6P Gene

Membrane; Single-pass type I membrane protein.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SPACA6P Gene

Pathways & Interactions for SPACA6P Gene

SuperPathways for SPACA6P Gene

No Data Available

Interacting Proteins for SPACA6P Gene

Gene Ontology (GO) - Biological Process for SPACA6P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SPACA6P Gene

Drugs & Compounds for SPACA6P Gene

No Compound Related Data Available

Transcripts for SPACA6P Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SPACA6P Gene

No ASD Table

Relevant External Links for SPACA6P Gene

GeneLoc Exon Structure for
SPACA6P
ECgene alternative splicing isoforms for
SPACA6P

Expression for SPACA6P Gene

mRNA expression in normal human tissues for SPACA6P Gene

mRNA Expression by UniProt/SwissProt for SPACA6P Gene

W5XKT8-SACA6_HUMAN
Tissue specificity: Expressed in testis.
genes like me logo Genes that share expression patterns with SPACA6P: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for SPACA6P Gene

Orthologs for SPACA6P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SPACA6P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Ncrna00085 16
Species with no ortholog for SPACA6P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SPACA6P Gene

ENSEMBL:
Gene Tree for SPACA6P (if available)
TreeFam:
Gene Tree for SPACA6P (if available)

Paralogs for SPACA6P Gene

No data available for Paralogs for SPACA6P Gene

Variants for SPACA6P Gene

Sequence variations from dbSNP and Humsavar for SPACA6P Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2122893 -- 51,702,179(+) TGATC(C/T)GGCCC intron-variant
rs2167416 -- 51,700,169(+) GAATC(A/G)CTTGA intron-variant
rs2167417 -- 51,700,205(+) GCCAA(G/T)ATCAC intron-variant
rs2167418 -- 51,701,689(+) GCTGC(A/G)GAGAA nc-transcript-variant
rs2290282 -- 51,702,357(+) TCCCC(A/G)TCAGG intron-variant

Relevant External Links for SPACA6P Gene

HapMap Linkage Disequilibrium report
SPACA6P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SPACA6P Gene

Disorders for SPACA6P Gene

Relevant External Links for SPACA6P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SPACA6P
genes like me logo Genes that share disorders with SPACA6P: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SPACA6P Gene

Publications for SPACA6P Gene

  1. A transgenic insertion on mouse chromosome 17 inactivates a novel immunoglobulin superfamily gene potentially involved in sperm-egg fusion. (PMID: 24275887) Lorenzetti D. … Bishop C.E. (Mamm. Genome 2014) 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 67
  3. Pinstripe: a suite of programs for integrating transcriptomic and proteomic datasets identifies novel proteins and improves differentiation of protein-coding and non-coding genes. (PMID: 23044541) Gascoigne D.K. … Mattick J.S. (Bioinformatics 2012) 67
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67

Products for SPACA6P Gene

Sources for SPACA6P Gene

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