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SPACA4 Gene

protein-coding   GIFtS: 40
GCID: GC19P049110

Sperm Acrosome Associated 4

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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Sperm Acrosome Associated 41 2
SAMP142 3 5
Sperm Acrosomal Membrane-Associated Protein 142 3
Sperm Acrosomal Membrane Protein 142
Sperm Acrosome Membrane-Associated Protein 42

External Ids:    HGNC: 164411   Entrez Gene: 1711692   Ensembl: ENSG000001772027   OMIM: 6099325   UniProtKB: Q8TDM53   

Export aliases for SPACA4 gene to outside databases

Previous GC identifers: GC00U991082 GC19M049478 GC19P053786 GC19P053801 GC19P045489


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SPACA4 Gene:
SPACA4 (sperm acrosome associated 4) is a protein-coding gene.

UniProtKB/Swiss-Prot: SACA4_HUMAN, Q8TDM5
Function: Sperm surface membrane protein that may be involved in sperm-egg plasma membrane adhesion and fusion
during fertilization




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011109.17  
Regulatory elements:
   Regulatory transcription factor binding sites in the SPACA4 gene promoter:
         AML1a   p53   LUN-1   AP-4   Nkx5-1   RORalpha1   PPAR-alpha   CP2   ZIC2/Zic2   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SPACA4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.33   Ensembl cytogenetic band:  19q13.33   HGNC cytogenetic band: 19q13.33

SPACA4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SPACA4 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P049110:  view genomic region     (about GC identifiers)

Start:
49,110,000 bp from pter      End:
49,110,971 bp from pter
Size:
972 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: SACA4_HUMAN, Q8TDM5 (See protein sequence)
Recommended Name: Sperm acrosome membrane-associated protein 4 precursor  
Size: 124 amino acids; 13004 Da

Explore the universe of human proteins at neXtProt for SPACA4: NX_Q8TDM5

Explore proteomics data for SPACA4 at MOPED


See SPACA4 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_598005.1  
ENSEMBL proteins: 
 ENSP00000312774  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR001526 LY6_UPAR

Graphical View of Domain Structure for InterPro Entry Q8TDM5

ProtoNet protein and cluster: Q8TDM5

1 Blocks protein domain: IPB001526 CD59 antigen

UniProtKB/Swiss-Prot: SACA4_HUMAN, Q8TDM5
Similarity: Contains 1 UPAR/Ly6 domain


Find genes that share domains with SPACA4           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: SACA4_HUMAN, Q8TDM5
Function: Sperm surface membrane protein that may be involved in sperm-egg plasma membrane adhesion and fusion
during fertilization

Phenotypes:
     1 MGI phenotypic allele for Spaca4 (no phenotypes)


Find genes that share phenotypes with SPACA4           About GenesLikeMe

Animal Models:
     MGI mouse knock-out Spaca4tm1Lex for SPACA4

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SACA4_HUMAN, Q8TDM5: Cell membrane; Lipid-anchor, GPI-anchor. Cytoplasmic vesicle, secretory vesicle, acrosome.
Note=Expressed in acrosomal matrix and outer and inner acrosomal membranes
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane5
extracellular3

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0001669acrosomal vesicle IEA--
GO:0005886plasma membrane IEA--
GO:0031225anchored component of membrane IEA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for SPACA4

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007155cell adhesion IEA--

Find genes that share ontologies with SPACA4           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SPACA4 gene: 
NM_133498.2  

Unigene Cluster for SPACA4:

Sperm acrosome associated 4
Hs.122599  [show with all ESTs]
Unigene Representative Sequence: BC047334
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000321762(uc002pjo.3)
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Additional mRNA sequence: 

AF353721.2 AY358387.1 BC047334.1 

2 DOTS entries:

DT.409957  DT.75102004 

2 AceView cDNA sequences:

AF353721 AY358387 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SPACA4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AAATATGGTA
SPACA4 Expression
About this image

SPACA4 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SPACA4 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.122599

UniProtKB/Swiss-Prot: SACA4_HUMAN, Q8TDM5
Tissue specificity: Testis specific. Expressed in spermatozoa

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and mouse.

Orthologs for SPACA4 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Spaca41 , 5 sperm acrosome associated 41, 5 74.86(n)1
68.85(a)1
  7 (29.46 cM)5
693631  NM_027055.31  NP_081331.21 
 457251075 


ENSEMBL Gene Tree for SPACA4 (if available)
TreeFam Gene Tree for SPACA4 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Structural Variations
     Database of Genomic Variants (DGV) 5 variations for SPACA4:    About this table    
Variant IDTypeSubtypePubMed ID
dgv3967n71CNV Loss21882294
nsv912225CNV Loss21882294
nsv912228CNV Loss21882294
dgv3966n71CNV Loss21882294
nsv9739CNV Gain+Loss18304495

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609932    OMIM disorders: --


Find genes that share disorders with SPACA4           About GenesLikeMe


Export disorders for SPACA4 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SPACA4 gene integrated from 10 sources:
(articles sorted by number of sources associating them with SPACA4)
    Utopia: connect your pdf to the dynamic
world of online information

  1. SAMP14, a novel, acrosomal membrane-associated, glycosylphosphatidylinositol-anchored member of the Ly-6/urokinase- type plasminogen activator receptor superfamily with a role in sperm- egg interaction. (PubMed id 12788941)1, 2, 9 Shetty J.... Herr J.C. (J. Biol. Chem. 2003)
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  3. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (Genome Res. 2003)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 171169 HGNC: 16441 AceView: SPACA4.1 Ensembl:ENSG00000177202 euGenes: HUgn171169
ECgene: SPACA4 H-InvDB: SPACA4

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SPACA4 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SPACA4 gene:
Search GeneIP for patents involving SPACA4

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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