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Aliases for SP9 Gene

Aliases for SP9 Gene

  • Sp9 Transcription Factor 2 3
  • Zinc Finger Protein 990 2 3
  • Sp9 Transcription Factor Homolog (Mouse) 2
  • Sp9 Transcription Factor Homolog 3
  • Transcription Factor Sp9 3
  • SPGFY2 6
  • ZNF990 3
  • USP9Y 6
  • DFFRY 6

External Ids for SP9 Gene

Previous GeneCards Identifiers for SP9 Gene

  • GC02P174908
  • GC02P175199
  • GC02P167080

Summaries for SP9 Gene

GeneCards Summary for SP9 Gene

SP9 (Sp9 Transcription Factor) is a Protein Coding gene. Among its related pathways are Ubiquitin-Proteasome Dependent Proteolysis. An important paralog of this gene is KLF2.

UniProtKB/Swiss-Prot for SP9 Gene

  • Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SP9 Gene

Genomics for SP9 Gene

Regulatory Elements for SP9 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SP9 Gene

174,334,946 bp from pter
174,338,492 bp from pter
3,547 bases
Plus strand

Genomic View for SP9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP9 Gene

Proteins for SP9 Gene

  • Protein details for SP9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Transcription factor Sp9
    Protein Accession:
    Secondary Accessions:

    Protein attributes for SP9 Gene

    484 amino acids
    Molecular mass:
    48915 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SP9 Gene

Proteomics data for SP9 Gene at MOPED

Post-translational modifications for SP9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SP9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SP9 Gene

Domains for SP9 Gene

Gene Families for SP9 Gene

  • SP :Specificity protein transcription factors
  • ZNF :Zinc fingers, C2H2-type

Protein Domains for SP9 Gene

Suggested Antigen Peptide Sequences for SP9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • P0CG40
  • Belongs to the Sp1 C2H2-type zinc-finger protein family.
  • Contains 3 C2H2-type zinc fingers.
genes like me logo Genes that share domains with SP9: view

Function for SP9 Gene

Molecular function for SP9 Gene

UniProtKB/Swiss-Prot Function: Transcription factor which plays a key role in limb development. Positively regulates FGF8 expression in the apical ectodermal ridge (AER) and contributes to limb outgrowth in embryos (By similarity).

Gene Ontology (GO) - Molecular Function for SP9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with SP9: view

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SP9 Gene

Localization for SP9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SP9 Gene


Subcellular locations from

Jensen Localization Image for SP9 Gene COMPARTMENTS Subcellular localization image for SP9 gene
Compartment Confidence
nucleus 4

Gene Ontology (GO) - Cellular Components for SP9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with SP9: view

Pathways for SP9 Gene

genes like me logo Genes that share pathways with SP9: view

Pathways by source for SP9 Gene

1 Qiagen pathway for SP9 Gene

Interacting Proteins for SP9 Gene

Gene Ontology (GO) - Biological Process for SP9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0030326 embryonic limb morphogenesis IEA --
genes like me logo Genes that share ontologies with SP9: view

Transcripts for SP9 Gene

mRNA/cDNA for SP9 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SP9 Gene

Sp9 transcription factor:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SP9

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SP9
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SP9 Gene

No ASD Table

Relevant External Links for SP9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SP9 Gene

mRNA expression in normal human tissues for SP9 Gene

mRNA differential expression in normal tissues according to GTEx for SP9 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (8.8), Brain - Putamen (basal ganglia) (7.4), Brain - Caudate (basal ganglia) (7.3), and Brain - Anterior cingulate cortex (BA24) (5.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SP9 Gene

SOURCE GeneReport for Unigene cluster for SP9 Gene Hs.516603

genes like me logo Genes that share expressions with SP9: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SP9 Gene

Orthologs for SP9 Gene

This gene was present in the common ancestor of animals.

Orthologs for SP9 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia SP9 35
  • 94.87 (n)
  • 99.17 (a)
SP9 36
  • 100 (a)
(Canis familiaris)
Mammalia SP9 36
  • 95 (a)
(Mus musculus)
Mammalia Sp9 35
  • 93.46 (n)
  • 99.59 (a)
Sp9 16
Sp9 36
  • 100 (a)
(Monodelphis domestica)
Mammalia SP9 36
  • 96 (a)
(Rattus norvegicus)
Mammalia Sp9 35
  • 93.04 (n)
  • 99.38 (a)
(Gallus gallus)
Aves SP9 35
  • 86.43 (n)
  • 87.5 (a)
(Anolis carolinensis)
Reptilia SP9 36
  • 73 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia sp9 35
  • 77.15 (n)
  • 83.78 (a)
(Danio rerio)
Actinopterygii sp9 35
  • 74.56 (n)
  • 82.37 (a)
sp9 36
  • 80 (a)
fruit fly
(Drosophila melanogaster)
Insecta Sp1 36
  • 33 (a)
Species with no ortholog for SP9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SP9 Gene

Gene Tree for SP9 (if available)
Gene Tree for SP9 (if available)

Paralogs for SP9 Gene

genes like me logo Genes that share paralogs with SP9: view

Variants for SP9 Gene

Sequence variations from dbSNP and Humsavar for SP9 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs28414502 -- 174,336,485(+) CCTTC(A/T)TTTCC reference, missense
rs34763941 -- 174,337,686(+) CCGCT(C/T)AGGGC downstream-variant-500B
rs35314049 -- 174,337,871(+) CACTC(A/G)CGCGC downstream-variant-500B
rs35548534 -- 174,336,175(+) AACAC(C/G)AGCCC synonymous-codon, reference
rs62174227 -- 174,336,571(+) TCGGG(C/G)TTCCA reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SP9 Gene

Variant ID Type Subtype PubMed ID
nsv875421 CNV Loss 21882294
dgv4365n71 CNV Loss 21882294

Relevant External Links for SP9 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SP9 Gene

Disorders for SP9 Gene

(1) OMIM Diseases for SP9 Gene (400005)

(1) University of Copenhagen DISEASES for SP9 Gene

genes like me logo Genes that share disorders with SP9: view

No data available for UniProtKB/Swiss-Prot for SP9 Gene

Publications for SP9 Gene

  1. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4

Products for SP9 Gene

Sources for SP9 Gene

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