SP6 Gene
protein-coding GIFtS : 45
GCID: GC17 M045922
Sp6 transcription factor
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Aliasesfor SP6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Sp6 Transcription Factor 1 2 EPFN2 KLF141 2 3 EPIPROFIN2 Krueppel-Like Factor 142 3 Kruppel-Like Factor 142 Epfn1 Transcription Factor Sp62
Export aliases for SP6 gene to outside databases Previous GC identifers: GC17U990229 GC17M046396 GC17M043277 GC17M041291
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Summariesfor SP6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SP6 : SP6 belongs to a family of transcription factors that contain 3 classical zinc finger DNA-binding domains consisting of a zinc atom tetrahedrally coordinated by 2 cysteines and 2 histidines (C2H2 motif). These transcription factors bind to GC-rich sequences and related GT and CACCC boxes (Scohy et al., 2000 (PubMed 11087666)).(supplied by OMIM, Mar 2008) UniProtKB/Swiss-Prot: SP6_HUMAN, Q3SY56 Function : Promotes cell proliferation (By similarity)
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Genomic Viewsfor SP6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000017.10 NC_018928.1 NT_010783.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SP6 gene promoter: Oct-B1 Bach1 oct-B3 POU2F1 oct-B2 POU2F1a Other transcription factors Search SABiosciences Chromatin IP Primers for SP6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SP6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 17q21.32 Ensembl cytogenetic band: 17q21.32 HGNC cytogenetic band: 17q21.32 SP6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17M045922: view genomic region
(about GC identifiers )
Start:
45,922,279 bp from pter
End:
45,933,240 bp from pter
Size:
10,962 bases
Orientation:
minus strand
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Proteinsfor SP6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SP6_HUMAN, Q3SY56 (See
protein sequence )Recommended Name: Transcription factor Sp6 Size : 376 amino acids; 39840 Da
Subcellular location : Nucleus (By similarity)
Secondary accessions : B3KXS4Explore the universe of human proteins at neXtProt for SP6: NX_Q3SY56 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q3SY56 SP6 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001245177.1 NP_954871.1 ENSEMBL proteins: ENSP00000340799 ENSP00000438209 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
SP6 for ontologies About GeneDecksing SP6 Antibody Products: Assay Products for SP6:
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Protein
Domains / Familiesfor SP6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SP6 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q3SY56 ProtoNet protein and cluster: Q3SY56
UniProtKB/Swiss-Prot: SP6_HUMAN, Q3SY56 Similarity : Belongs to the Sp1 C2H2-type zinc-finger protein familySimilarity : Contains 3 C2H2-type zinc fingers
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Functionfor SP6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SP6_HUMAN, Q3SY56 Function : Promotes cell proliferation (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SP6 (NM_032992 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP6
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP6
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
SP6 for ontologies About GeneDecksing 2 GenomeRNAi human phenotypes for SP6 :Animal Models: Mouse knock-outs for SP6: Sp6 tm1Yoya Sp6 tm1.1Ibmm 8 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Sp6) :
SP6 for phenotypes About GeneDecksing
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Pathways & Interactionsfor SP6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SP6 Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0008284 positive regulation of cell proliferation
IEA -- GO:0042481 regulation of odontogenesis
IEA --
SP6 for ontologies About GeneDecksing
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Drugs & Compoundsfor SP6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SP6 Search CenterWatch for drugs/clinical trials and news about SP6
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Transcriptsfor SP6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SP6 gene (2 alternative transcripts): NM_001258248.1 NM_199262.2 Unigene Cluster for SP6:
Sp6 transcription factor Hs.253603 [show with all ESTs ] Unigene Representative Sequence: AK127707 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000342234 (uc002imh.1 ) ENST00000536300 (uc002img.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP6 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): SP6 (NM_032992 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP6 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP6
Additional cDNA sequence: AK127707.1 AK127850.1 BC103951.1 BC103952.1 BC103953.1 BC103954.1
2 DOTS entries : DT.40292798 DT.97776385
24/46 AceView cDNA sequences (see all 46 ):
BE047476 AI024904 BX397994 BQ899369 AI817264 AI273585 AW207058 BE300880 BF109399 AA443011 NM_199262 AK127850 AI123505 AW136253 BX366631 BX366632 AW672805 AA451898 AW137518 AA639559 BE264655 AK127707 AW731842 BX094659 GeneLoc Exon Structure
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Expression for SP6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SP6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TATGTGTGTT
About this image SP6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 2 LifeMap In Vivo Development Anatomical Compartments/Cells Tissue Anatomical Compartment
Cell Category (developmental path) Limb Limb Bud Limb Bud Mesenchyme Cells Mesoderm Limb Limb Bud Limb Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SP6 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SP6 SOURCE GeneReport for Unigene cluster: Hs.253603 UniProtKB/Swiss-Prot: SP6_HUMAN, Q3SY56 Tissue specificity : Ubiquitous SABiosciences Custom PCR Arrays for SP6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SP6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP6 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP6
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Orthologsfor SP6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SP6 gene from 4/15 species (see all 15 ) About this table
ENSEMBL Gene Tree for SP6 (if available)TreeFam Gene Tree for SP6 (if available)
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Paralogsfor SP6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SP6 gene SP4 2 SP3 2 SP8 2 SP5 2 SP2 2 KLF17 2 SP1 2 SP9 2 SP7 2 18/29 SIMAP similar genes for SP6 using alignment to 1 protein entry: SP6_HUMAN (see all similar genes ):DKFZp686O1631 SP3 KLF6 DKFZp686N0199 Sp1 ZNF697 kr-znf3 DKFZp434J0650 ZFS-5 ZNF78L1 ZNF SP8 SP9 DKFZp313F0536 KLF7 PLZF KLF9 A-328A3.4
SP6 for paralogs About GeneDecksing
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Genomic Variantsfor SP6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 17 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SP6 (45922279 - 45933240 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SP6: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SP6
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Disorders
/ Diseasesfor SP6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SP6 for disorders About GeneDecksing
OMIM gene information: 608613
OMIM disorders : --3 diseases for SP6 : About MalaCards facial paralysis stomatitis paralysis 1 disease from the University of Copenhagen DISEASES database for SP6 :Pain agnosia Export disorders for SP6 gene to outside databases
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Publicationsfor SP6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SP6 gene integrated from 9 sources : (articles sorted by number of sources associating them with SP6) Utopia : connect your pdf to the dynamic world of online information
Identification of KLF13 and KLF14 (SP6), novel members of the SP/XKLF transcription factor family. (PubMed id 11087666) 1 , 3, 9 Scohy S.... Szpirer C. (2000) The Kruppel-like factor epiprofin is expressed by epithelium of developing teeth, hair follicles, and limb buds and promotes cell proliferation. (PubMed id 14551215) 1 , 3 Nakamura T....Yamada Y. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for SP6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SP6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SP6 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SP6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SP6 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SP6 gene: Search GeneIP for patents involving SP6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SP6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SP6 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SP6 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP6 OriGene Protein Over-expression Lysate for SP6 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SP6 OriGene 3'-UTR Clone for SP6 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP6 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP6 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for SP6 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SP6 OriGene Custom Protein Services for SP6 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SP6 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SP6 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SP6 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SP6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP6
Search Tocris compounds for SP6
SP6 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP6
Search ThermoFisher Antibodies for SP6
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP6
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