SP5 Gene
protein-coding GIFtS : 48
GCID: GC02 P171571
Sp5 transcription factor
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Aliasesfor SP5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Sp5 Transcription Factor 1 2 Transcription Factor Sp52
Export aliases for SP5 gene to outside databases Previous GC identifers: GC02P171774 GC02P171398 GC02P171280 GC02P163460
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Summariesfor SP5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: SP5_HUMAN, Q6BEB4 Function : Binds to GC boxes promoters elements. Probable transcriptional activator that has a role in the coordinationof changes in transcription required to generate pattern in the developing embryo (By similarity)
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Genomic Viewsfor SP5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000002.11 NC_018913.1 NT_005403.17 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SP5 gene promoter: AML1a Pax-5 ATF-2 STAT1beta STAT1alpha GATA-1 Arnt MZF-1 CRE-BP1 SEF-1 (1) Other transcription factors Search SABiosciences Chromatin IP Primers for SP5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SP5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 2q31.1 Ensembl cytogenetic band: 2q31.1 HGNC cytogenetic band: 2q31 SP5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02P171571: view genomic region
(about GC identifiers )
Start:
171,571,857 bp from pter
End:
171,574,588 bp from pter
Size:
2,732 bases
Orientation:
plus strand
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Proteinsfor SP5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SP5_HUMAN, Q6BEB4 (See
protein sequence )Recommended Name: Transcription factor Sp5 Size : 398 amino acids; 41964 Da
Subcellular location : Nucleus (By similarity)Explore the universe of human proteins at neXtProt for SP5: NX_Q6BEB4 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6BEB4 SP5 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_001003845.1 ENSEMBL proteins: ENSP00000364430 Human Recombinant Protein Products for SP5: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
SP5 for ontologies About GeneDecksing SP5 Antibody Products: Assay Products for SP5:
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Protein
Domains / Familiesfor SP5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SP5 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6BEB4 ProtoNet protein and cluster: Q6BEB4
UniProtKB/Swiss-Prot: SP5_HUMAN, Q6BEB4 Similarity : Belongs to the Sp1 C2H2-type zinc-finger protein familySimilarity : Contains 3 C2H2-type zinc fingers
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Functionfor SP5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Molecular Function: UniProtKB/Swiss-Prot Summary: SP5_HUMAN, Q6BEB4 Function : Binds to GC boxes promoters elements. Probable transcriptional activator that has a role in the coordinationof changes in transcription required to generate pattern in the developing embryo (By similarity)
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0008270 zinc ion binding
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
SP5 for ontologies About GeneDecksing Phenotypes: 3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Sp5) :
SP5 for phenotypes About GeneDecksing Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP5OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): SP5 (NM_004347 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP5
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP5
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Pathways & Interactionsfor SP5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Regulation of Wnt-mediated beta catenin signaling and target gene transcription
1 BioSystems Pathway for SP5 Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SP5 STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)3 Interacting proteins for SP5 (Q6BEB4 3 ENSP00000364430 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table Gene Ontology (GO): 5 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0006351 transcription, DNA-dependent
IEA -- GO:0006355 regulation of transcription, DNA-dependent
IEA -- GO:0035121 tail morphogenesis
-- -- GO:0036342 post-anal tail morphogenesis
IEA -- GO:0060349 bone morphogenesis
IEA --
SP5 for ontologies About GeneDecksing
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Drugs & Compoundsfor SP5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for SP5 Search CenterWatch for drugs/clinical trials and news about SP5
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Transcriptsfor SP5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SP5 gene: NM_001003845.2 Unigene Cluster for SP5:
Sp5 transcription factor Hs.368802 [show with all ESTs ] Unigene Representative Sequence: NM_001003845 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000375281 (uc002uge.3 ) ENST00000487037 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP5 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP5OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 4 ): SP5 (NM_004347 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP5
Additional cDNA sequence: AB096175.1
2 DOTS entries : DT.204786 DT.99970248
24/27 AceView cDNA sequences (see all 27 ):
AI291584 CA866597 AI620770 BC069026 BQ064677 AA883311 AI161376 CA337181 BQ648306 AW450640 AI910361 BQ652868 AI278767 AB096175 AI553924 BQ643741 BV205926 AI393053 BV185594 AI275629 AI245906 CA866861 AI380207 NM_001003845 GeneLoc Exon Structure
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Expression for SP5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SP5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATATGTCTCTAbout this image SP5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See SP5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SP5 SOURCE GeneReport for Unigene cluster: Hs.368802 SABiosciences Custom PCR Arrays for SP5 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SP5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP5 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP5
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Orthologsfor SP5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SP5 gene from 6/20 species (see all 20 ) About this table
ENSEMBL Gene Tree for SP5 (if available)TreeFam Gene Tree for SP5 (if available)
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Paralogsfor SP5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SP5 gene SP1 2 SP4 2 SP3 2 SP8 2 SP6 2 SP2 2 KLF17 2 SP7 2 SP9 2 12 SIMAP similar genes for SP5 using alignment to 1 protein entry: SP5_HUMAN :DKFZp686O1631 SP3 KLF9 KLF6 SP1 Sp1 KLF16 ZNF697 ZNF702P SP8 SP4 ZNF844
SP5 for paralogs About GeneDecksing
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Genomic Variantsfor SP5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 2 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SP5 (171571857 - 171574588 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for SP5 1 CNV : 68199
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor SP5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SP5 for disorders About GeneDecksing
OMIM gene information: 609391
OMIM disorders : --1 disease for SP5 : About MalaCards prostatitis Export disorders for SP5 gene to outside databases
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Publicationsfor SP5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SP5 gene integrated from 9 sources : (articles sorted by number of sources associating them with SP5) Utopia : connect your pdf to the dynamic world of online information
Elevated expression and potential roles of human Sp5, a member of Sp transcription factor family, in human cancers. (PubMed id 16380080) 1 Chen Y....Aburatani H. (2006) Nkx3.1 binds and negatively regulates the transcriptional activity of Sp-family members in prostate-derived cells. (PubMed id 16201967) 1 Simmons S.O. and Horowitz J.M. (2006) Mammalian SP/KLF transcription factors: bring in the family. (PubMed id 15820306) 1 Suske G....Philipsen S. (2005) Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197) 1 Brandenberger R.... Stanton L.W. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for SP5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SP5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SP5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SP5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SP5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SP5 gene: Search GeneIP for patents involving SP5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SP5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for SP5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SP5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP5 OriGene Protein Over-expression Lysate for SP5 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SP5 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SP5 OriGene Custom Protein Services for SP5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SP5 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing SP5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SP5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SP5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP5
Search Tocris compounds for SP5
SP5 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP5
ThermoFisher Antibodies for SP5
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP5
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Transcripts for SP5
Variants for SP5
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