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Aliases for SP2-AS1 Gene

Subcategory (RNA class) for SP2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SP2-AS1 Gene

  • SP2 Antisense RNA 1 2 3 5

External Ids for SP2-AS1 Gene

Summaries for SP2-AS1 Gene

GeneCards Summary for SP2-AS1 Gene

SP2-AS1 (SP2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SP2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SP2-AS1 Gene

Genomics for SP2-AS1 Gene

Regulatory Elements for SP2-AS1 Gene

Enhancers for SP2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H048001 1.9 FANTOM5 Ensembl ENCODE dbSUPER 11 -62.0 -61991 4 HDGF ARNT ZNF133 YBX1 ZBTB7B YY1 ZNF121 ZNF766 FOS ATF7 PRR15L CALCOCO2 SP2-AS1 PNPO HOXB4 ENSG00000266601 NFE2L1 CBX1 SNX11 HOXB6
GH17H047964 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.9 -25.6 -25620 4 ELF3 MLX ARID4B RAD21 YY1 ZNF121 FOS THAP11 SP5 REST SCRN2 CDK5RAP3 PNPO PRR15L SKAP1 SP2-AS1 SP2 MIR152 COPZ2 SNX11
GH17H047970 1.4 ENCODE dbSUPER 11.9 -29.9 -29913 2 HDGF FOXA2 PKNOX1 ARNT ZFP64 ARID4B SIN3A YBX1 DMAP1 ZNF2 ENSG00000266601 SP2 CDK5RAP3 SCRN2 KPNB1 MRPL45P2 EFCAB13 PNPO PRR15L SP2-AS1
GH17H047941 1.4 ENCODE dbSUPER 10.9 -0.4 -447 1 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 SP3 NFYC SSRP1 ZNF610 MRPL45P2 UBE2Z EFCAB13 SP2 ENSG00000264701 CDK5RAP3 ENSG00000266601 RPS2P47 ENSG00000253347 SCRN2
GH17H047862 1.3 Ensembl ENCODE dbSUPER 10.6 +78.3 78312 1 JUN SIN3A ZIC2 FOSL1 ZNF316 FOS PRDM10 NFE2 TRIM24 MAFK SCRN2 OSBPL7 SP2 SP2-AS1 PNPO PRR15L ENSG00000264243
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SP2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SP2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095243 -390 1201 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 SP3 NFYC SSRP1 ZNF610

Genomic Location for SP2-AS1 Gene

Chromosome:
17
Start:
47,897,330 bp from pter
End:
47,941,410 bp from pter
Size:
44,081 bases
Orientation:
Minus strand

Genomic View for SP2-AS1 Gene

Genes around SP2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SP2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SP2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SP2-AS1 Gene

Proteins for SP2-AS1 Gene

Post-translational modifications for SP2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SP2-AS1 Gene

Domains & Families for SP2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SP2-AS1 Gene

Function for SP2-AS1 Gene

Phenotypes From GWAS Catalog for SP2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SP2-AS1 Gene

Localization for SP2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SP2-AS1 Gene

Pathways & Interactions for SP2-AS1 Gene

SuperPathways for SP2-AS1 Gene

No Data Available

Interacting Proteins for SP2-AS1 Gene

Gene Ontology (GO) - Biological Process for SP2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SP2-AS1 Gene

Drugs & Compounds for SP2-AS1 Gene

No Compound Related Data Available

Transcripts for SP2-AS1 Gene

mRNA/cDNA for SP2-AS1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SP2-AS1 Gene

No ASD Table

Relevant External Links for SP2-AS1 Gene

GeneLoc Exon Structure for
SP2-AS1
ECgene alternative splicing isoforms for
SP2-AS1

Expression for SP2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SP2-AS1 Gene

genes like me logo Genes that share expression patterns with SP2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SP2-AS1 Gene

Orthologs for SP2-AS1 Gene

Evolution for SP2-AS1 Gene

ENSEMBL:
Gene Tree for SP2-AS1 (if available)
TreeFam:
Gene Tree for SP2-AS1 (if available)

No data available for Orthologs for SP2-AS1 Gene

Paralogs for SP2-AS1 Gene

No data available for Paralogs for SP2-AS1 Gene

Variants for SP2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SP2-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs370243877 Pathogenic 47,941,773(+) CATGG(A/T)CCTGG intron-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs796052870 Pathogenic 47,941,677(+) CCCCA(C/T)GACGT intron-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs745440177 Likely benign 47,941,648(+) GCCAC(A/G)GCCGG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs762339867 Likely benign 47,941,670(+) GGCGG(A/C/T)CCCCC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs766668907 Likely benign 47,943,302(+) CTTTC(C/G)TAGGC intron-variant, upstream-variant-2KB

Relevant External Links for SP2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SP2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SP2-AS1 Gene

Disorders for SP2-AS1 Gene

Relevant External Links for SP2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SP2-AS1

No disorders were found for SP2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SP2-AS1 Gene

Publications for SP2-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SP2-AS1 Gene

Sources for SP2-AS1 Gene

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