SP1 Gene
protein-coding GIFtS : 64
GCID: GC12 P053773
Sp1 transcription factor
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Aliasesfor SP1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Sp1 Transcription Factor 1 2 Specificity Protein 12 Transcription Factor Sp12 TSFP13
Export aliases for SP1 gene to outside databases Previous GC identifers: GC12P053801 GC12P053490 GC12P052060 GC12P050814
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Summariesfor SP1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SP1 : The protein encoded by this gene is a zinc finger transcription factor that binds to GC-rich motifs of many promoters. The encoded protein is involved in many cellular processes, including cell differentiation, cell growth, apoptosis, immune responses, response to DNA damage, and chromatin remodeling. Post-translational modifications such as phosphorylation, acetylation, glycosylation, and proteolytic processing significantly affect the activity of this protein, which can be an activator or a repressor. Three transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Oct 2011) UniProtKB/Swiss-Prot: SP1_HUMAN, P08047 Function : Transcription factor that can activate or repress transcription in response to physiological and pathologicalstimuli. Binds with high affinity to GC-rich motifs and regulates the expression of a large number of genes involved in a variety of processes such as cell growth, apoptosis, differentiation and immune responses. Highly regulated by post-translational modifications (phosphorylations, sumoylation, proteolytic cleavage, glycosylation and acetylation). Binds also the PDGFR-alpha G-box promoter. May have a role in modulating the cellular response to DNA damage. Implicated in chromatin remodeling. Plays a role in the recruitment of SMARCA4/BRG1 on the c-FOS promoter. Plays an essential role in the regulation of FE65 gene expression. In complex with ATF7IP, maintains telomerase activity in cancer cells by inducing TERT and TERC gene expression Gene Wiki entry for SP1 (Sp1 transcription factor)
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Genomic Viewsfor SP1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000012.11 NC_018923.1 NT_029419.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SP1 gene promoter: STAT1 AP-1 ATF-2 c-Jun Other transcription factors Search SABiosciences Chromatin IP Primers for SP1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SP1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 12q13.1 Ensembl cytogenetic band: 12q13.13 HGNC cytogenetic band: 12q13.1 SP1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 12 GeneLoc Exon Structure
GeneLoc location for GC12P053773: view genomic region
(about GC identifiers )
Start:
53,773,960 bp from pter
End:
53,810,230 bp from pter
Size:
36,271 bases
Orientation:
plus strand
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Proteinsfor SP1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SP1_HUMAN, P08047 (See
protein sequence )Recommended Name: Transcription factor Sp1 Size : 785 amino acids; 80693 Da
Subunit : Interacts with ATF7IP, ATF7IP2, BAHD1, POGZ, HCFC1, AATF and PHC2. Interacts with varicella-zoster virus IE62protein. Interacts with HIV-1 Vpr; the interaction is inhibited by SP1 O-glycosylation. Interacts with SV40 VP2/3 proteins. Interacts with SV40 major capsid protein VP1; this interaction leads to a cooperativity between the 2 proteins in DNA binding. Interacts with HLTF; the interaction may be required for basal transcriptional activity of HLTF. Interacts (deacetylated form) with EP300; the interaction enhances gene expression. Interacts with HDAC1 and JUN. Interacts with ELF1; the interaction is inhibited by glycosylation of SP1. Interaction with NFYA; the interaction is inhibited by glycosylation of SP1. Interacts with SMARCA4/BRG1 (By similarity). Interacts with ATF7IP and TBP. Interacts with MEIS2 isoform 4 and PBX1 isoform PBX1a. Interacts with EGR1
Subcellular location : Nucleus. Cytoplasm. Note=Nuclear location is governed by glycosylated/phosphorylated states.Insulin promotes nuclear location, while glucagon favors cytoplasmic location
Miscellaneous : In the hepatoma cell line Hep-G2, SP1 precursor mRNA may undergo homotype trans-splicing leading to theduplication of exons 2 and 3
Sequence caution : Sequence=AAH43224.1; Type=Erroneous initiation;
5 PDB 3D structures from and Proteopedia for SP1 :1SP1 (3D)
  1SP2 (3D)
  1VA1 (3D)
  1VA2 (3D)
  1VA3 (3D)
 
Secondary accessions : Q86TN8 Q9H3Q5 Q9NR51 Q9NY21 Q9NYE7Explore the universe of human proteins at neXtProt for SP1: NX_P08047 Post-translational modifications:
Phosphorylated on multiple serine and threonine residues. Phosphorylation is coupled to ubiquitination, sumoylation and proteolytic processing. Phosphorylation on Ser-59 enhances proteolytic cleavage. Phosphorylation on Ser-7 enhances ubiquitination and protein degradation. Hyperphosphorylation on Ser-101 in response to DNA damage has no effect on transcriptional activity. MAPK1/MAPK3-mediated phosphorylation on Thr-453 and Thr-739 enhances VEGF transcription but, represses FGF2-triggered PDGFR-alpha transcription. Also implicated in the repression of RECK by ERBB2. Hyperphosphorylated on Thr-278 and Thr-739 during mitosis by MAPK8 shielding SP1 from degradation by the ubiquitin-dependent pathway. Phosphorylated in the zinc-finger domain by calmodulin-activated PKCzeta. Phosphorylation on Ser-641 by PKCzeta is critical for TSA-activated LHR gene expression through release of its repressor, p107. Phosphorylation on Thr-668, Ser-670 and Thr-681 is stimulated by angiotensin II via the AT1 receptor inducing increased binding to the PDGF-D promoter. This phosphorylation is increased in injured artey wall. Ser-59 and Thr-681 can both be dephosphorylated by PP2A during cell-cycle interphase. Dephosphorylation on Ser-59 leads to increased chromatin association during interphase and increases the transcriptional activity. On insulin stimulation, sequentially glycosylated and phosphorylated on several C-terminal serine and threonine residues1
Acetylated. Acetylation/deacetylation events affect transcriptional activity. Deacetylation leads to an increase in the expression the 12(s)-lipooxygenase gene though recruitment of p300 to the promoter1
Ubiquitinated. Ubiquitination occurs on the C-terminal proteolytically-cleaved peptide and is triggered by phosphorylation1
Sumoylated with SUMO1. Sumoylation modulates proteolytic cleavage of the N-terminal repressor domain. Sumoylation levels are attenuated during tumorigenesis. Phosphorylation mediates SP1 desumoylation1
Proteolytic cleavage in the N-terminal repressor domain is prevented by sumoylation. The C-terminal cleaved product is susceptible to degradation1
O-glycosylated; Contains 8 N-acetylglucosamine side chains. Levels are controlled by insulin and the SP1 phosphorylation states. Insulin-mediated O-glycosylation locates SP1 to the nucleus, where it is sequentially deglycosylated and phosphorylated. O-glycosylation affects transcriptional activity through disrupting the interaction with a number of transcription factors including ELF1 and NFYA. Also inhibits interaction with the HIV1 promoter. Inhibited by peroxisomome proliferator receptor gamma (PPARgamma)1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P08047 SP1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_001238754.1 NP_003100.1 NP_612482.2 ENSEMBL proteins: ENSP00000457804 ENSP00000329357 ENSP00000404263 ENSP00000458133 Reactome Protein details: P08047 Human Recombinant Protein Products: Gene Ontology (GO): 5 cellular component terms (GO ID links to tree view) : About this table
SP1 for ontologies About GeneDecksing SP1 Antibody Products: Assay Products for SP1:
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Protein
Domains / Familiesfor SP1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SP1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P08047 ProtoNet protein and cluster: P08047
UniProtKB/Swiss-Prot: SP1_HUMAN, P08047 Similarity : Belongs to the Sp1 C2H2-type zinc-finger protein familySimilarity : Contains 3 C2H2-type zinc fingers
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Functionfor SP1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SP1_HUMAN, P08047 Function : Transcription factor that can activate or repress transcription in response to physiological and pathologicalstimuli. Binds with high affinity to GC-rich motifs and regulates the expression of a large number of genes involved in a variety of processes such as cell growth, apoptosis, differentiation and immune responses. Highly regulated by post-translational modifications (phosphorylations, sumoylation, proteolytic cleavage, glycosylation and acetylation). Binds also the PDGFR-alpha G-box promoter. May have a role in modulating the cellular response to DNA damage. Implicated in chromatin remodeling. Plays a role in the recruitment of SMARCA4/BRG1 on the c-FOS promoter. Plays an essential role in the regulation of FE65 gene expression. In complex with ATF7IP, maintains telomerase activity in cancer cells by inducing TERT and TERC gene expression Induction : By insulin
Genatlas biochemistry entry for SP1 : transcription factor Sp-1,GT box binding protein Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SP1 (NM_170609 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP1
Gene Ontology (GO): 5/20 molecular function terms (GO ID links to tree view) (see all 20 ): About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
ISS -- GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding
IEA -- GO:0000987 core promoter proximal region sequence-specific DNA binding
-- -- GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
IEA -- GO:0001103 RNA polymerase II repressing transcription factor binding
ISS --
SP1 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for SP1 :Animal Models: 13 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Sp1) :
SP1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor SP1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/62 super-pathways (see all 62 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Expression of Mevalonate Kinase (MVK) 2 Development_Prolactin receptor signaling 3 Regulation of Lipid Metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha) 4 Regulation of Cholesterol Biosynthesis by SREBP (SREBF) 5 Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
Pathway sources See GeneCards unified pathways Show all pathways 5/12 EMD Millipore Pathways for SP1 (see all 12 )5/11 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for SP1 (see all 11 )2
Cell Signaling Technology (CST) Pathways for SP1 5/15 GeneGo (Thomson Reuters) Pathways for SP1 (see all 15 )5/29 BioSystems Pathways for SP1 (see all 29 ) 5/22
Reactome Pathways for SP1 (see all 22 )1 PharmGKB Pathway for SP1 2
Kegg Pathways (Kegg details for SP1) :
SP1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for SP1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/265 Interacting proteins for SP1 (P08047 1 , 2 , 3 ENSP00000329357 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 265 )Interactant Interaction Details GeneCard External ID(s) POU2F1 P14859 1 , 2 , 3 , ENSP00000271411 4 EBI-298336,EBI-624770 MINT-6803426 MINT-6803452 MINT-6803484 MINT-6803438 MINT-6803470 I2D:
score=4 STRING: ENSP00000271411 HMGA1 P17096 2 , 3 , ENSP00000308227 4 MINT-49729 MINT-49730 MINT-49727 MINT-49728 I2D:
score=4 STRING: ENSP00000308227 TP53 P04637 2 , 3 , ENSP00000269305 4 MINT-56525 MINT-56523 MINT-56524 I2D:
score=6 STRING: ENSP00000269305 AATF Q9NY61 2 , 3 , ENSP00000225402 4 MINT-49665 MINT-49666 I2D:
score=4 STRING: ENSP00000225402 GABPA Q06546 2 , 3 , ENSP00000346886 4 MINT-49851 MINT-49852 I2D:
score=4 STRING: ENSP00000346886
About this table Gene Ontology (GO): 5/22 biological process terms (GO ID links to tree view) (see all 22 ): About this table
SP1 for ontologies About GeneDecksing
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Drugs & Compoundsfor SP1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SP1 for compounds About GeneDecksing Browse Tocris compounds for SP1 1 HMDB Compound for SP1 About this table 10/128 Novoseek chemical compound relationships for SP1 gene (see all 128 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
mithramycin
91.2
153
20086170 (3), 17973266 (3), 15489892 (3), 17124180 (2) (see all 86 )
wp631
81.3
10
10446226 (2), 16705627 (1), 11172687 (1), 12219017 (1) (see all 7 )
5-aza-2'deoxycytidine
67.2
24
9632722 (6), 17203216 (2), 11507078 (2), 17260018 (1) (see all 7 )
chloramphenicol
66.9
15
8344287 (1), 8910439 (1), 1423289 (1), 8245855 (1) (see all 13 )
zinc
61.6
190
7685185 (4), 11395515 (4), 9586044 (3), 12565691 (3) (see all 99 )
mal.4
60.2
3
7479972 (1), 12719007 (1)
oligonucleotide
58.1
89
10722737 (2), 8208618 (2), 9458359 (2), 8634093 (2) (see all 58 )
dimethyl sulfate
58
3
12560236 (1), 9494121 (1), 9079666 (1)
estrogen
52.6
96
15541729 (4), 18543253 (3), 8195246 (3), 9328340 (3) (see all 60 )
retinoic acid
46.4
55
15219855 (5), 17937658 (5), 10452548 (3), 8083995 (3) (see all 28 )
Search CenterWatch for drugs/clinical trials and news about SP1
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Transcriptsfor SP1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SP1 gene (3 alternative transcripts): NM_001251825.1 NM_003109.1 NM_138473.2 Unigene Cluster for SP1:
Sp1 transcription factor Hs.649191 [show with all ESTs ] Unigene Representative Sequence: NM_138473 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000551969 ENST00000327443 ENST00000426431 (uc021qyf.1 uc001scw.3 uc010sog.2 )ENST00000548560 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SP1 (NM_170609 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SP1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP1
Additional cDNA sequence: AB209678.1 AF252284.1 AF255682.1 AJ272134.1 AK311995.1 AL442093.1 BC012008.1 BC043224.1 BC062539.1 BC078158.1 FJ949572.1 FN908228.1 J03133.1
7 DOTS entries : DT.446979 DT.100790645
DT.102841326 DT.121316782 DT.92030853 DT.92435550 DT.97859522 24/358 AceView cDNA sequences (see all 358 ):
AW847882 BP872136 BM714447 AI243266 AJ272134 BQ286204 AI431874 AF255682 AI183581 BU674208 BM974559 CA393369 BC043224 BP873002 AA075969 BQ718687 BQ184254 BF591132 AA730972 CB131820 BM930046 BM726055 AI862807 BF589344 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for SP1 About this scheme ExUns: 1 ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5 ^ 6 ^ 7 SP1 :   -   -                   SP2 :     -                   SP3 :   -   -     -               SP4 :                      
ECgene alternative splicing isoforms for SP1
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Expression for SP1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SP1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATGATCTGCC
About this image SP1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Somite Cervical Epaxial Myotome Mononuclear Myocytes Skeletal Muscle Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SP1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SP1 SOURCE GeneReport for Unigene cluster: Hs.649191 UniProtKB/Swiss-Prot: SP1_HUMAN, P08047 Tissue specificity : Up-regulated in adenocarcinomas of the stomach (at protein level) SABiosciences Expression via Pathway-Focused PCR Arrays including SP1 (see all 10 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP1
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Orthologsfor SP1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for SP1 gene from 6/19 species (see all 19 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
SP11
Sp1 transcription factor
73.78(n) 80.67(a)
 
395303 NM_204604.1 NP_989935.1
lizard (Anolis carolinensis)
Reptilia
SP16 --
--
74(a) 5(a)
1 ↔ 1possible ortholog
2(73499280-73529749) 3(88021848-88042132)
tropical clawed frog (Xenopus tropicalis)
Amphibia
MGC760062
transcription factor
79.67(n)
 
BC061414.1
zebrafish (Danio rerio)
Actinopterygii
sp12
sp1 transcription factor
74.78(n)
 
324109 AI657942.1
fruit fly (Drosophila melanogaster)
Insecta
Spps1
Sp1-like factor for pairing sensitive-silencing
42.74(n) 34.54(a)
 
42882 NM_142975.2 NP_651232.1
worm (Caenorhabditis elegans)
Secernentea
sptf-16
Specificity Protein) Transcription Factor family m...
12(a)
possible ortholog
I(10366612-10371685)
ENSEMBL Gene Tree for SP1 (if available)TreeFam Gene Tree for SP1 (if available)
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Paralogsfor SP1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SP1 gene SP4 2 SP3 2 SP8 2 SP5 2 SP2 2 KLF17 2 SP6 2 SP9 2 SP7 2 18/68 SIMAP similar genes for SP1 using alignment to 8 protein entries: SP1_HUMAN (see all proteins )
(see all similar genes ):Sp1 DHFRP2 PSG PSG3 PSG11 PSG7 WT1 PSG4 PSG5 PSG9 CEACAM4 PSG6 CEACAM3 CEACAM7 DKFZp686O1631 PSG2 PSG11s' CEACAM8
SP1 for paralogs About GeneDecksing
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Genomic Variantsfor SP1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 12 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SP1 (53773960 - 53810230 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for SP1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SP1
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Disorders
/ Diseasesfor SP1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SP1 for disorders About GeneDecksing
OMIM gene information: 189906
OMIM disorders : --20/139 diseases for SP1 (see all 139 ): About MalaCards machado-joseph disease estrogen-receptor positive breast cancer hailey-hailey disease high blood pressure human t-cell leukemia virus type 1 erythropoietic protoporphyria retinol binding protein cerebrotendinous xanthomatosis dna topoisomerase ii hereditary hemorrhagic telangiectasia ectopic pregnancy erythema multiforme myotonic dystrophy proliferative diabetic retinopathy multiple endocrine neoplasia autism spectrum disorder xanthomatosis beta thalassemia primary biliary cirrhosis ovarian hyperstimulation syndrome 1 disease from the University of Copenhagen DISEASES database for SP1 :Cancer 10/93 Novoseek disease relationships for SP1 gene (see all 93 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
erythroleukemia
53.8
5
15998736 (1), 8463313 (1), 11304527 (1)
tumors
50.3
174
19772640 (4), 15818728 (4), 11844788 (3), 17510417 (3) (see all 98 )
retinoblastoma
47.8
30
14653808 (3), 11228546 (2), 8007947 (2), 9242441 (2) (see all 20 )
immunodeficiency
47.3
51
7690421 (2), 9525578 (2), 2072454 (2), 9584164 (2) (see all 43 )
cancer
42.7
70
19621387 (4), 19588484 (3), 17656364 (3), 15263012 (2) (see all 44 )
breast cancer
41.2
57
17927860 (6), 16143315 (4), 12176973 (3), 12052832 (3) (see all 27 )
choriocarcinoma
34.3
6
10962555 (3), 10491299 (1), 9231796 (1), 17872376 (1)
colon cancer
32.3
5
15883203 (2), 19593667 (1), 17689681 (1), 20230799 (1)
prostate cancer
29
19
15708372 (2), 11336792 (2), 19017637 (2), 15895377 (1) (see all 15 )
fibrosarcoma
27.1
14
15705902 (3), 15067326 (3), 15857802 (2), 10452548 (1) (see all 5 )
Human Genome Epidemiology (HuGE) Navigator: SP1 (147 documents) Export disorders for SP1 gene to outside databases
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Publicationsfor SP1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SP1 gene, integrated from 9 sources (see all 2094 ): (articles sorted by number of sources associating them with SP1) Utopia : connect your pdf to the dynamic world of online information
Phosphorylation by c-Jun NH2-terminal kinase 1 regulates the stability of transcription factor Sp1 during mitosis. (PubMed id 18199680) 1 , 2 , 9 Chuang J.-Y....Hung J.-J. (2008) Phosphorylation mediates Sp1 coupled activities of proteolytic processing, desumoylation and degradation. (PubMed id 18239466) 1 , 2 , 9 Spengler M.L.... Brattain M.G. (2008) Phosphatidylinositol 3-kinase/protein kinase Czeta-induced phosphorylation of Sp1 and p107 repressor release have a critical role in histone deacetylase inhibitor-mediated derepression of transcription of the luteinizing hormone receptor gene. (PubMed id 16943418) 1 , 2 , 9 Zhang Y.... Dufau M.L. (2006) Angiotensin II-inducible platelet-derived growth factor-D transcription requires specific Ser/Thr residues in the second zinc finger region of Sp1. (PubMed id 18258854) 1 , 2 , 9 Tan N.Y.... Khachigian L.M. (2008) Snail associates with EGR-1 and SP-1 to upregulate tr anscriptional activation of p15INK4b. (PubMed id 20121949) 1 , 2 , 9 Hu C.T....Wu W.S. (2010) Functional interactions between Sp1 or Sp3 and the helicase-like transcription factor mediate basal expression from the human plasminogen activator inhibitor-1 gene. (PubMed id 10391891) 1 , 2 , 9 Ding H.... Belayew A. (1999) O-GlcNAcylation of Sp1 interrupts Sp1 interaction with NF-Y. (PubMed id 19302979) 1 , 2 , 9 Lim K. and Chang H.I. (2009) Sp1 deacetylation induced by phorbol ester recruits p300 to activate 12(S)-lipoxygenase gene transcription. (PubMed id 16478997) 1 , 2 , 9 Hung J.J....Chang W.C. (2006) Structures of zinc finger domains from transcription factor Sp1. Insights into sequence-specific protein-DNA recognition. (PubMed id 9065444) 1 , 2 , 9 Narayan V.A.... Caradonna J.P. (1997) The Sp1 transcription factor gene (SP1) and the 1,25-dihydroxyvitamin D3 receptor gene (VDR) are colocalized on human chromosome arm 12q and rat chromosome 7. (PubMed id 1662663) 1 , 3, 9 Szpirer J....DeLuca H.F. (1991)
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External Searches for SP1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SP1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing SP1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SP1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SP1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for SP1 gene: Search GeneIP for patents involving SP1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SP1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for SP1 OriGene shRNA RFP for SP1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SP1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SP1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SP1 OriGene 3'-UTR Clone for SP1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SP1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SP1 OriGene Custom Protein Services for SP1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SP1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SP1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SP1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SP1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SP1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SP1
Antibodies & Assays for SP1  
Search Tocris compounds for SP1
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SP1
ThermoFisher Antibody for SP1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SP1
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