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Aliases for SOX9-AS1 Gene

Subcategory (RNA class) for SOX9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SOX9-AS1 Gene

  • SOX9 Antisense RNA 1 2 3 5

External Ids for SOX9-AS1 Gene

Previous GeneCards Identifiers for SOX9-AS1 Gene

  • GC17M070033

Summaries for SOX9-AS1 Gene

GeneCards Summary for SOX9-AS1 Gene

SOX9-AS1 (SOX9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SOX9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX9-AS1 Gene

Genomics for SOX9-AS1 Gene

GeneHancer (GH) Regulatory Elements for SOX9-AS1 Gene

Promoters and enhancers for SOX9-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I072191 Enhancer 0.9 FANTOM5 Ensembl ENCODE 0.3 +44.3 44320 2.3 ZFHX2 ZBTB48 CREB1 FOS EGR2 GC17P072219 GC17P072161 SOX9-AS1
GH17I072120 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.1 +113.4 113375 8.6 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A FEZF1 DMAP1 ZNF2 SOX9 SLC39A11 GC17P072122 GC17P072161 SOX9-AS1
GH17I072150 Enhancer 1.1 Ensembl ENCODE 0.2 +85.6 85579 2.8 FOXA2 SIN3A DMAP1 ZNF48 FOS RXRA MXD4 MIER2 REST PPARG GC17P072161 GC17P072122 SOX9-AS1
GH17I072270 Enhancer 0.5 ENCODE 0.3 -33.5 -33492 0.2 ZNF217 JUND GATA3 POLR2A RCOR1 CHD2 SOX9-AS1 GC17P072345
GH17I072273 Enhancer 0.5 ENCODE 0.3 -36.6 -36616 0.9 RFX1 RFX3 CREB1 ATF7 BMI1 ATF2 SOX9-AS1 GC17P072345
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOX9-AS1 Gene

Genomic Locations for SOX9-AS1 Gene
chr17:72,034,107-72,237,203
(GRCh38/hg38)
Size:
203,097 bases
Orientation:
Minus strand
chr17:70,033,455-70,217,977
(GRCh37/hg19)

Genomic View for SOX9-AS1 Gene

Genes around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX9-AS1 Gene

Proteins for SOX9-AS1 Gene

Post-translational modifications for SOX9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX9-AS1 Gene

Domains & Families for SOX9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Function for SOX9-AS1 Gene

Phenotypes From GWAS Catalog for SOX9-AS1 Gene

Phenotypes for SOX9-AS1 Gene

GenomeRNAi human phenotypes for SOX9-AS1:
genes like me logo Genes that share phenotypes with SOX9-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX9-AS1 Gene

Localization for SOX9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOX9-AS1 Gene

Pathways & Interactions for SOX9-AS1 Gene

SuperPathways for SOX9-AS1 Gene

No Data Available

Interacting Proteins for SOX9-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOX9-AS1 Gene

Drugs & Compounds for SOX9-AS1 Gene

No Compound Related Data Available

Transcripts for SOX9-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SOX9-AS1 Gene

No ASD Table

Relevant External Links for SOX9-AS1 Gene

GeneLoc Exon Structure for
SOX9-AS1
ECgene alternative splicing isoforms for
SOX9-AS1

Expression for SOX9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOX9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX9-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with SOX9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOX9-AS1 Gene

Orthologs for SOX9-AS1 Gene

Evolution for SOX9-AS1 Gene

ENSEMBL:
Gene Tree for SOX9-AS1 (if available)
TreeFam:
Gene Tree for SOX9-AS1 (if available)

No data available for Orthologs for SOX9-AS1 Gene

Paralogs for SOX9-AS1 Gene

No data available for Paralogs for SOX9-AS1 Gene

Variants for SOX9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX9-AS1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1042837249 uncertain-significance, Camptomelic dysplasia 72,121,189(-) C/G upstream_transcript_variant
rs111264561 likely-benign, Camptomelic dysplasia 72,121,236(-) T/A upstream_transcript_variant
rs115615437 likely-benign, Camptomelic dysplasia 72,121,223(-) G/A upstream_transcript_variant
rs116826102 likely-benign, uncertain-significance, Camptomelic dysplasia 72,121,309(-) G/A/T upstream_transcript_variant
rs137853128 pathogenic, Acampomelic campomelic dysplasia 72,121,618(-) C/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SOX9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3381146 CNV duplication 20981092
esv3573809 CNV gain 25503493
nsv828101 CNV gain 20364138
nsv833530 CNV gain+loss 17160897

Additional Variant Information for SOX9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOX9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOX9-AS1 Gene

Disorders for SOX9-AS1 Gene

Additional Disease Information for SOX9-AS1

No disorders were found for SOX9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX9-AS1 Gene

Publications for SOX9-AS1 Gene

  1. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 2 3 58
  2. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers JC … Kooner JS (Nature genetics 2011) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SOX9-AS1 Gene

Sources for SOX9-AS1 Gene

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