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Aliases for SOX9-AS1 Gene

Subcategory (RNA class) for SOX9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SOX9-AS1 Gene

  • SOX9 Antisense RNA 1 2 3 5

External Ids for SOX9-AS1 Gene

Previous GeneCards Identifiers for SOX9-AS1 Gene

  • GC17M070033

Summaries for SOX9-AS1 Gene

GeneCards Summary for SOX9-AS1 Gene

SOX9-AS1 (SOX9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX9-AS1 Gene

Genomics for SOX9-AS1 Gene

Regulatory Elements for SOX9-AS1 Gene

Enhancers for SOX9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SOX9-AS1 Gene

72,034,107 bp from pter
72,237,203 bp from pter
203,097 bases
Minus strand

Genomic View for SOX9-AS1 Gene

Genes around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX9-AS1 Gene

Proteins for SOX9-AS1 Gene

Post-translational modifications for SOX9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX9-AS1 Gene

Domains & Families for SOX9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Function for SOX9-AS1 Gene

Phenotypes for SOX9-AS1 Gene

GenomeRNAi human phenotypes for SOX9-AS1:
genes like me logo Genes that share phenotypes with SOX9-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX9-AS1 Gene

Localization for SOX9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOX9-AS1 Gene

Pathways & Interactions for SOX9-AS1 Gene

SuperPathways for SOX9-AS1 Gene

No Data Available

Interacting Proteins for SOX9-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX9-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SOX9-AS1 Gene

Drugs & Compounds for SOX9-AS1 Gene

No Compound Related Data Available

Transcripts for SOX9-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SOX9-AS1 Gene

No ASD Table

Relevant External Links for SOX9-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SOX9-AS1 Gene

mRNA expression in normal human tissues for SOX9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX9-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with SOX9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SOX9-AS1 Gene

Orthologs for SOX9-AS1 Gene

Evolution for SOX9-AS1 Gene

Gene Tree for SOX9-AS1 (if available)
Gene Tree for SOX9-AS1 (if available)

No data available for Orthologs for SOX9-AS1 Gene

Paralogs for SOX9-AS1 Gene

No data available for Paralogs for SOX9-AS1 Gene

Variants for SOX9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX9-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs723569 -- 72,102,518(-) CCACA(G/T)GCAGT intron-variant
rs1861496 -- 72,096,818(-) ATTTT(A/G)TTTTC intron-variant
rs2216169 -- 72,114,278(-) GACGA(C/T)TCACA intron-variant, nc-transcript-variant
rs1477066 -- 72,110,287(-) CCACT(A/G)TTTTG intron-variant
rs2287131 -- 72,110,086(-) TCACA(A/G)TGATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SOX9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3381146 CNV duplication 20981092
esv3573809 CNV gain 25503493
nsv828101 CNV gain 20364138
nsv833530 CNV gain+loss 17160897

Relevant External Links for SOX9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOX9-AS1 Gene

Disorders for SOX9-AS1 Gene

Relevant External Links for SOX9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SOX9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX9-AS1 Gene

Publications for SOX9-AS1 Gene

  1. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3 65
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for SOX9-AS1 Gene

Sources for SOX9-AS1 Gene

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