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Aliases for SOX9-AS1 Gene

Subcategory (RNA class) for SOX9-AS1 Gene

processed_transcript

Quality Score for this RNA gene is

3

Aliases for SOX9-AS1 Gene

  • SOX9 Antisense RNA 1 2 3

External Ids for SOX9-AS1 Gene

Summaries for SOX9-AS1 Gene

GeneCards Summary for SOX9-AS1 Gene

SOX9-AS1 (SOX9 Antisense RNA 1) is a RNA Gene, and belongs to processed_transcript RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX9-AS1 Gene

Genomics for SOX9-AS1 Gene

Genomic Location for SOX9-AS1 Gene

Start:
72,034,107 bp from pter
End:
72,237,203 bp from pter
Size:
203,097 bases
Orientation:
Minus strand

Genomic View for SOX9-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOX9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX9-AS1 Gene

No data available for Regulatory Elements for SOX9-AS1 Gene

Proteins for SOX9-AS1 Gene

Post-translational modifications for SOX9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX9-AS1 Gene

Domains for SOX9-AS1 Gene

Gene Families for SOX9-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SOX9-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Function for SOX9-AS1 Gene

Phenotypes for SOX9-AS1 Gene

GenomeRNAi human phenotypes for SOX9-AS1:
genes like me logo Genes that share phenotypes with SOX9-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOX9-AS1 Gene

Localization for SOX9-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SOX9-AS1 Gene

Pathways for SOX9-AS1 Gene

SuperPathways for SOX9-AS1 Gene

No Data Available

Interacting Proteins for SOX9-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX9-AS1 Gene

None

No data available for Pathways by source for SOX9-AS1 Gene

Transcripts for SOX9-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SOX9-AS1 Gene

No ASD Table

Relevant External Links for SOX9-AS1 Gene

GeneLoc Exon Structure for
SOX9-AS1
ECgene alternative splicing isoforms for
SOX9-AS1

Expression for SOX9-AS1 Gene

mRNA expression in normal human tissues for SOX9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX9-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (5.4).
genes like me logo Genes that share expressions with SOX9-AS1: view

Orthologs for SOX9-AS1 Gene

Evolution for SOX9-AS1 Gene

ENSEMBL:
Gene Tree for SOX9-AS1 (if available)
TreeFam:
Gene Tree for SOX9-AS1 (if available)

No data available for Orthologs for SOX9-AS1 Gene

Paralogs for SOX9-AS1 Gene

No data available for Paralogs for SOX9-AS1 Gene

Variants for SOX9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX9-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs723569 -- 72,102,518(-) CCACA(G/T)GCAGT intron-variant
rs1477066 -- 72,110,287(-) CCACT(A/G)TTTTG intron-variant
rs1861496 -- 72,096,818(-) ATTTT(A/G)TTTTC intron-variant
rs2216169 -- 72,114,278(-) GACGA(C/T)TCACA intron-variant, nc-transcript-variant
rs2287131 -- 72,110,086(-) TCACA(A/G)TGATC intron-variant

Relevant External Links for SOX9-AS1 Gene

HapMap Linkage Disequilibrium report
SOX9-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SOX9-AS1 Gene

Disorders for SOX9-AS1 Gene

No disorders were found for SOX9-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Publications for SOX9-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  2. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3

Products for SOX9-AS1 Gene

Sources for SOX9-AS1 Gene

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