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Aliases for SOX9-AS1 Gene

Subcategory (RNA class) for SOX9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SOX9-AS1 Gene

  • SOX9 Antisense RNA 1 2 3 5

External Ids for SOX9-AS1 Gene

Previous GeneCards Identifiers for SOX9-AS1 Gene

  • GC17M070033

Summaries for SOX9-AS1 Gene

GeneCards Summary for SOX9-AS1 Gene

SOX9-AS1 (SOX9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX9-AS1 Gene

Genomics for SOX9-AS1 Gene

Regulatory Elements for SOX9-AS1 Gene

Enhancers for SOX9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F072221 0.2 ENCODE 0.4 +14.2 14217 2.1 ZNF512 PBX2 BMI1 GC17P072219 SOX9-AS1
GH17F072255 0.2 ENCODE 0.3 -18.3 -18311 0.6 SMARCA4 SOX9-AS1 GC17P072345
GH17F072273 0.4 ENCODE 0.3 -36.6 -36617 0.9 RFX1 RFX3 CEBPB ATF2 SOX9-AS1 GC17P072345
GH17F072270 0.5 ENCODE 0.3 -33.5 -33492 0.2 ZNF217 GATA3 JUND SIN3A RAD21 SOX9-AS1 GC17P072345
GH17F072306 0.7 Ensembl 0.2 -68.9 -68898 0.2 ZNF316 CEBPA GC17P072345 SOX9-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SOX9-AS1 Gene

Chromosome:
17
Start:
72,034,107 bp from pter
End:
72,237,203 bp from pter
Size:
203,097 bases
Orientation:
Minus strand

Genomic View for SOX9-AS1 Gene

Genes around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX9-AS1 Gene

Proteins for SOX9-AS1 Gene

Post-translational modifications for SOX9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX9-AS1 Gene

Domains & Families for SOX9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Function for SOX9-AS1 Gene

Phenotypes for SOX9-AS1 Gene

GenomeRNAi human phenotypes for SOX9-AS1:
genes like me logo Genes that share phenotypes with SOX9-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX9-AS1 Gene

Localization for SOX9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOX9-AS1 Gene

Pathways & Interactions for SOX9-AS1 Gene

SuperPathways for SOX9-AS1 Gene

No Data Available

Interacting Proteins for SOX9-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX9-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOX9-AS1 Gene

Transcripts for SOX9-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SOX9-AS1 Gene

No ASD Table

Relevant External Links for SOX9-AS1 Gene

GeneLoc Exon Structure for
SOX9-AS1
ECgene alternative splicing isoforms for
SOX9-AS1

Expression for SOX9-AS1 Gene

mRNA expression in normal human tissues for SOX9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX9-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with SOX9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SOX9-AS1 Gene

Orthologs for SOX9-AS1 Gene

Evolution for SOX9-AS1 Gene

ENSEMBL:
Gene Tree for SOX9-AS1 (if available)
TreeFam:
Gene Tree for SOX9-AS1 (if available)

No data available for Orthologs for SOX9-AS1 Gene

Paralogs for SOX9-AS1 Gene

No data available for Paralogs for SOX9-AS1 Gene

Variants for SOX9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX9-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs137853128 Pathogenic 72,121,618(+) CGAGG(A/C)GGTCA upstream-variant-2KB, reference, missense
rs137853129 Pathogenic 72,122,749(+) CCCTT(C/G)GTGGA upstream-variant-2KB, reference, missense
rs137853130 Pathogenic 72,122,759(+) AGGAG(A/G)CGGAG upstream-variant-2KB, reference, missense
rs28940282 Pathogenic 72,122,780(+) TGCAG(C/T)ACAAG upstream-variant-2KB, reference, missense
rs193920972 Uncertain significance 72,121,452(+) CCGGC(A/G)CCCCC upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for SOX9-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3381146 CNV duplication 20981092
esv3573809 CNV gain 25503493
nsv828101 CNV gain 20364138
nsv833530 CNV gain+loss 17160897

Relevant External Links for SOX9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOX9-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOX9-AS1 Gene

Disorders for SOX9-AS1 Gene

Relevant External Links for SOX9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SOX9-AS1

No disorders were found for SOX9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX9-AS1 Gene

Publications for SOX9-AS1 Gene

  1. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers J.C. … Kooner J.S. (Nat. Genet. 2011) 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SOX9-AS1 Gene

Sources for SOX9-AS1 Gene

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