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Aliases for SOX9-AS1 Gene

Subcategory (RNA class) for SOX9-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SOX9-AS1 Gene

  • SOX9 Antisense RNA 1 2 3 5

External Ids for SOX9-AS1 Gene

Previous GeneCards Identifiers for SOX9-AS1 Gene

  • GC17M070033

Summaries for SOX9-AS1 Gene

GeneCards Summary for SOX9-AS1 Gene

SOX9-AS1 (SOX9 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SOX9-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX9-AS1 Gene

Genomics for SOX9-AS1 Gene

Regulatory Elements for SOX9-AS1 Gene

Enhancers for SOX9-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H072270 0.5 ENCODE 0.3 -33.5 -33492 0.2 ZNF217 GATA3 JUND POLR2A RCOR1 SOX9-AS1 GC17P072345
GH17H072273 0.5 ENCODE 0.3 -36.6 -36617 0.9 RFX1 RFX3 ATF7 BMI1 ATF2 SOX9-AS1 GC17P072345
GH17H072317 0.7 ENCODE 0.2 -80.4 -80432 0.2 SMARCA5 MAZ CBFB NR2F1 TRIM22 JUNB RARA ZNF217 ZFHX2 EED GC17P072345 SOX9-AS1
GH17H072337 1.2 Ensembl ENCODE 0.1 -102.2 -102156 3.1 FOXA2 ATF1 ZFP64 ARID4B FEZF1 FOS ATF7 ZHX2 TSHZ1 PPARG LINC00511 GC17P072345 SOX9-AS1
GH17H072221 0.2 ENCODE 0.4 +14.2 14217 2.1 GC17P072219 SOX9-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOX9-AS1 Gene

Genomic Locations for SOX9-AS1 Gene
203,097 bases
Minus strand

Genomic View for SOX9-AS1 Gene

Genes around SOX9-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX9-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX9-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX9-AS1 Gene

Proteins for SOX9-AS1 Gene

Post-translational modifications for SOX9-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX9-AS1 Gene

Domains & Families for SOX9-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX9-AS1 Gene

Function for SOX9-AS1 Gene

Phenotypes From GWAS Catalog for SOX9-AS1 Gene

Phenotypes for SOX9-AS1 Gene

GenomeRNAi human phenotypes for SOX9-AS1:
genes like me logo Genes that share phenotypes with SOX9-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX9-AS1 Gene

Localization for SOX9-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOX9-AS1 Gene

Pathways & Interactions for SOX9-AS1 Gene

SuperPathways for SOX9-AS1 Gene

No Data Available

Interacting Proteins for SOX9-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX9-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SOX9-AS1 Gene

Drugs & Compounds for SOX9-AS1 Gene

No Compound Related Data Available

Transcripts for SOX9-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SOX9-AS1 Gene

No ASD Table

Relevant External Links for SOX9-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SOX9-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOX9-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX9-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x5.4).
genes like me logo Genes that share expression patterns with SOX9-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOX9-AS1 Gene

Orthologs for SOX9-AS1 Gene

Evolution for SOX9-AS1 Gene

Gene Tree for SOX9-AS1 (if available)
Gene Tree for SOX9-AS1 (if available)

No data available for Orthologs for SOX9-AS1 Gene

Paralogs for SOX9-AS1 Gene

No data available for Paralogs for SOX9-AS1 Gene

Variants for SOX9-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX9-AS1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs137853128 Pathogenic 72,121,618(+) CGAGG(A/C)GGTCA upstream-variant-2KB, reference, missense
rs137853129 Pathogenic 72,122,749(+) CCCTT(C/G)GTGGA upstream-variant-2KB, reference, missense
rs137853130 Pathogenic 72,122,759(+) AGGAG(A/G)CGGAG upstream-variant-2KB, reference, missense
rs28940282 Pathogenic 72,122,780(+) TGCAG(C/T)ACAAG upstream-variant-2KB, reference, missense
rs886041242 Pathogenic 72,122,729(+) TGAAC(G/T)AGAGC upstream-variant-2KB, reference, stop-gained

Structural Variations from Database of Genomic Variants (DGV) for SOX9-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv833530 CNV gain+loss 17160897
nsv828101 CNV gain 20364138
esv3573809 CNV gain 25503493
esv3381146 CNV duplication 20981092

Relevant External Links for SOX9-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOX9-AS1 Gene

Disorders for SOX9-AS1 Gene

Relevant External Links for SOX9-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SOX9-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX9-AS1 Gene

Publications for SOX9-AS1 Gene

  1. Genome-wide association study identifies loci influencing concentrations of liver enzymes in plasma. (PMID: 22001757) Chambers JC … Kooner JS (Nature genetics 2011) 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  3. The long non-coding RNA ROCR contributes to SOX9 expression and chondrogenic differentiation of human mesenchymal stem cells. (PMID: 29084806) Barter MJ … Young DA (Development (Cambridge, England) 2017) 3

Products for SOX9-AS1 Gene

Sources for SOX9-AS1 Gene

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