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Aliases for SOX30 Gene

Aliases for SOX30 Gene

  • SRY-Box 30 2 3 5
  • SRY (Sex Determining Region Y)-Box 30 2
  • SRY Box 30 2

External Ids for SOX30 Gene

Previous GeneCards Identifiers for SOX30 Gene

  • GC05M157102
  • GC05M157603
  • GC05M156988
  • GC05M157033
  • GC05M156985
  • GC05M152141
  • GC05M157053

Summaries for SOX30 Gene

Entrez Gene Summary for SOX30 Gene

  • This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein acts as a transcriptional regulator when present in a complex with other proteins. It can activate p53 transcription to promote tumor cell apoptosis in lung cancer. The protein may be involved in the differentiation of developing male germ cells. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome 5. [provided by RefSeq, Apr 2015]

GeneCards Summary for SOX30 Gene

SOX30 (SRY-Box 30) is a Protein Coding gene. Among its related pathways are ERK Signaling. GO annotations related to this gene include sequence-specific DNA binding and RNA polymerase II transcription factor activity, sequence-specific DNA binding. An important paralog of this gene is SOX13.

UniProtKB/Swiss-Prot for SOX30 Gene

  • Transcriptional activator. Binds to the DNA sequence 5-ACAAT-3 and shows a preference for guanine residues surrounding this core motif.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX30 Gene

Genomics for SOX30 Gene

Regulatory Elements for SOX30 Gene

Promoters for SOX30 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SOX30 on UCSC Golden Path with GeneCards custom track

Genomic Location for SOX30 Gene

Chromosome:
5
Start:
157,624,796 bp from pter
End:
157,672,756 bp from pter
Size:
47,961 bases
Orientation:
Minus strand

Genomic View for SOX30 Gene

Genes around SOX30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX30 Gene

Proteins for SOX30 Gene

  • Protein details for SOX30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94993-SOX30_HUMAN
    Recommended name:
    Transcription factor SOX-30
    Protein Accession:
    O94993
    Secondary Accessions:
    • O94995
    • Q8IYX6

    Protein attributes for SOX30 Gene

    Size:
    753 amino acids
    Molecular mass:
    81854 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for SOX30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SOX30 Gene

Proteomics data for SOX30 Gene at MOPED

Post-translational modifications for SOX30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SOX30 Gene

No data available for DME Specific Peptides for SOX30 Gene

Domains & Families for SOX30 Gene

Gene Families for SOX30 Gene

Protein Domains for SOX30 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SOX30 Gene

Graphical View of Domain Structure for InterPro Entry

O94993

UniProtKB/Swiss-Prot:

SOX30_HUMAN :
  • Contains 1 HMG box DNA-binding domain.
Domain:
  • Contains 1 HMG box DNA-binding domain.
genes like me logo Genes that share domains with SOX30: view

Function for SOX30 Gene

Molecular function for SOX30 Gene

GENATLAS Biochemistry:
SRY related HMG box gene 30,expressed in testis,potentially involved in differentiation of male germ cells with two alternatively spliced isoforms,modulator of LINE retroposons promoter activity
UniProtKB/Swiss-Prot Function:
Transcriptional activator. Binds to the DNA sequence 5-ACAAT-3 and shows a preference for guanine residues surrounding this core motif.

Gene Ontology (GO) - Molecular Function for SOX30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000981 NOT RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA 10359848
genes like me logo Genes that share ontologies with SOX30: view
genes like me logo Genes that share phenotypes with SOX30: view

Animal Model Products

  • Taconic Biosciences Mouse Models for SOX30

miRNA for SOX30 Gene

miRTarBase miRNAs that target SOX30

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SOX30 Gene

Localization for SOX30 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SOX30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SOX30 Gene COMPARTMENTS Subcellular localization image for SOX30 gene
Compartment Confidence
nucleus 5
cytosol 3
golgi apparatus 1

No data available for Gene Ontology (GO) - Cellular Components for SOX30 Gene

Pathways & Interactions for SOX30 Gene

SuperPathways for SOX30 Gene

Superpath Contained pathways
1 ERK Signaling
genes like me logo Genes that share pathways with SOX30: view

Pathways by source for SOX30 Gene

1 Qiagen pathway for SOX30 Gene

Gene Ontology (GO) - Biological Process for SOX30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0031960 response to corticosteroid IEP 18436822
genes like me logo Genes that share ontologies with SOX30: view

No data available for SIGNOR curated interactions for SOX30 Gene

Drugs & Compounds for SOX30 Gene

No Compound Related Data Available

Transcripts for SOX30 Gene

Unigene Clusters for SOX30 Gene

SRY (sex determining region Y)-box 30:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOX30 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5a · 5b
SP1:
SP2: -

Relevant External Links for SOX30 Gene

GeneLoc Exon Structure for
SOX30
ECgene alternative splicing isoforms for
SOX30

Expression for SOX30 Gene

mRNA expression in normal human tissues for SOX30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SOX30 Gene

This gene is overexpressed in Testis (x49.2).

Protein differential expression in normal tissues from HIPED for SOX30 Gene

This gene is overexpressed in Testis (57.0) and Heart (9.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for SOX30 Gene



SOURCE GeneReport for Unigene cluster for SOX30 Gene Hs.744348

mRNA Expression by UniProt/SwissProt for SOX30 Gene

O94993-SOX30_HUMAN
Tissue specificity: Expressed in testis.
genes like me logo Genes that share expression patterns with SOX30: view

Protein tissue co-expression partners for SOX30 Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for SOX30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SOX30 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SOX30 35
  • 86.91 (n)
  • 82.16 (a)
SOX30 36
  • 81 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SOX30 35
  • 87.63 (n)
  • 83.15 (a)
SOX30 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sox30 35
  • 83.15 (n)
  • 78.49 (a)
Sox30 16
Sox30 36
  • 75 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SOX30 35
  • 99.38 (n)
  • 98.94 (a)
SOX30 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sox30 35
  • 86.16 (n)
  • 82.74 (a)
oppossum
(Monodelphis domestica)
Mammalia SOX30 36
  • 67 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SOX30 36
  • 88 (a)
OneToOne
chicken
(Gallus gallus)
Aves SOX30 35
  • 64.81 (n)
  • 55.73 (a)
SOX30 36
  • 55 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SOX30 36
  • 61 (a)
OneToOne
Species with no ortholog for SOX30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SOX30 Gene

ENSEMBL:
Gene Tree for SOX30 (if available)
TreeFam:
Gene Tree for SOX30 (if available)

Paralogs for SOX30 Gene

Paralogs for SOX30 Gene

(10) SIMAP similar genes for SOX30 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for SOX30 Gene

genes like me logo Genes that share paralogs with SOX30: view

Variants for SOX30 Gene

Sequence variations from dbSNP and Humsavar for SOX30 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs889057 - 157,626,357(-) AAAAA(A/G)TGCTC reference, missense, utr-variant-3-prime
rs12188040 - 157,646,739(+) ATTCT(G/T)TGTGG reference, missense
rs1895341 -- 157,645,518(+) ttagc(C/T)aggca intron-variant
rs2287762 -- 157,625,000(-) TGACA(C/T)TTTCT utr-variant-3-prime
rs2863748 -- 157,648,952(-) AAAAT(A/T)GTGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SOX30 Gene

Variant ID Type Subtype PubMed ID
dgv1868e1 CNV Complex 17122850

Variation tolerance for SOX30 Gene

Residual Variation Intolerance Score: 85.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.15; 75.75% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SOX30 Gene

HapMap Linkage Disequilibrium report
SOX30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SOX30 Gene

Disorders for SOX30 Gene

Relevant External Links for SOX30

Genetic Association Database (GAD)
SOX30
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SOX30

No disorders were found for SOX30 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX30 Gene

Publications for SOX30 Gene

  1. Identification of a novel Sry-related gene and its germ cell-specific expression. (PMID: 10359848) Osaki E. … Semba K. (Nucleic Acids Res. 1999) 3 4 23 67
  2. Origin and diversity of the SOX transcription factor gene family: genome-wide analysis in Fugu rubripes. (PMID: 15019997) Koopman P. … Venkatesh B. (Gene 2004) 2 3
  3. HMG-box sequences from microbats homologous to the human SOX30 HMG-box. (PMID: 11678506) Bullejos M. … SA!nchez A. (Genetica 2000) 2 3
  4. SOX30, a novel epigenetic silenced tumor suppressor, promotes tumor cell apoptosis by transcriptional activating p53 in lung cancer. (PMID: 25435374) Han F. … Liu J. (Oncogene 2015) 3
  5. Combining RNA and protein profiling data with network interactions identifies genes associated with spermatogenesis in mouse and human. (PMID: 25609838) Petit F.G. … Primig M. (Biol. Reprod. 2015) 3

Products for SOX30 Gene

Sources for SOX30 Gene

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