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Aliases for SOX21-AS1 Gene

Subcategory (RNA class) for SOX21-AS1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SOX21-AS1 Gene

  • SOX21 Antisense RNA 1 (Head To Head) 2 3
  • SOX21 Antisense RNA 1 (Non-Protein Coding) 2
  • SOX21 Antisense RNA 1 2

External Ids for SOX21-AS1 Gene

ORGUL Members for SOX21-AS1 Gene

Previous GeneCards Identifiers for SOX21-AS1 Gene

  • GC13P095366

Summaries for SOX21-AS1 Gene

GeneCards Summary for SOX21-AS1 Gene

SOX21-AS1 (SOX21 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SOX21-AS1 Gene

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SOX21-AS1 Gene

Genomics for SOX21-AS1 Gene

Genomic Location for SOX21-AS1 Gene

Start:
94,712,716 bp from pter
End:
94,716,246 bp from pter
Size:
3,531 bases
Orientation:
Plus strand

Genomic View for SOX21-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOX21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX21-AS1 Gene

No data available for Regulatory Elements for SOX21-AS1 Gene

Proteins for SOX21-AS1 Gene

Post-translational modifications for SOX21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX21-AS1 Gene

Domains for SOX21-AS1 Gene

Gene Families for SOX21-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SOX21-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX21-AS1 Gene

Function for SOX21-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOX21-AS1 Gene

Localization for SOX21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOX21-AS1 Gene

Pathways for SOX21-AS1 Gene

SuperPathways for SOX21-AS1 Gene

No Data Available

Interacting Proteins for SOX21-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX21-AS1 Gene

None

No data available for Pathways by source for SOX21-AS1 Gene

Transcripts for SOX21-AS1 Gene

mRNA/cDNA for SOX21-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOX21-AS1 Gene

SOX21 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOX21-AS1 Gene

No ASD Table

Relevant External Links for SOX21-AS1 Gene

GeneLoc Exon Structure for
SOX21-AS1
ECgene alternative splicing isoforms for
SOX21-AS1

Expression for SOX21-AS1 Gene

mRNA expression in normal human tissues for SOX21-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX21-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (4.9), Brain - Amygdala (4.5), Brain - Caudate (basal ganglia) (4.3), and Brain - Putamen (basal ganglia) (4.0).

SOURCE GeneReport for Unigene cluster for SOX21-AS1 Gene Hs.556071

genes like me logo Genes that share expressions with SOX21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SOX21-AS1 Gene

Orthologs for SOX21-AS1 Gene

Evolution for SOX21-AS1 Gene

ENSEMBL:
Gene Tree for SOX21-AS1 (if available)
TreeFam:
Gene Tree for SOX21-AS1 (if available)

No data available for Orthologs for SOX21-AS1 Gene

Paralogs for SOX21-AS1 Gene

No data available for Paralogs for SOX21-AS1 Gene

Variants for SOX21-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX21-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1555571 -- 94,714,637(+) acaca(C/G)acaca nc-transcript-variant
rs2253604 -- 94,712,083(+) CCGCC(G/T)CCCGG upstream-variant-2KB
rs6145187 -- 94,714,607(+) TCATT(-/CACACACA)CACAC nc-transcript-variant
rs7982376 -- 94,715,095(+) ACTGG(A/C)ACATA nc-transcript-variant
rs7982791 -- 94,715,356(+) GTCTT(A/T)TAGGA nc-transcript-variant

Relevant External Links for SOX21-AS1 Gene

HapMap Linkage Disequilibrium report
SOX21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SOX21-AS1 Gene

Disorders for SOX21-AS1 Gene

No disorders were found for SOX21-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SOX21-AS1 Gene

Publications for SOX21-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SOX21-AS1 Gene

Sources for SOX21-AS1 Gene

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