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Aliases for SOX21-AS1 Gene

Subcategory (RNA class) for SOX21-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SOX21-AS1 Gene

  • SOX21 Antisense RNA 1 (Head To Head) 2 3 5
  • SOX21 Antisense RNA 1 (Non-Protein Coding) 2
  • SOX21 Antisense RNA 1 2

External Ids for SOX21-AS1 Gene

Previous GeneCards Identifiers for SOX21-AS1 Gene

  • GC13P095366

Summaries for SOX21-AS1 Gene

GeneCards Summary for SOX21-AS1 Gene

SOX21-AS1 (SOX21 Antisense RNA 1 (Head To Head)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX21-AS1 Gene

Genomics for SOX21-AS1 Gene

Regulatory Elements for SOX21-AS1 Gene

Enhancers for SOX21-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F094712 0.6 ENCODE 0.8 +0.4 401 1.6 RING1 ZNF121 ZFHX2 GLIS2 POLR2A PATZ1 ZNF547 PRDM10 ZBTB20 EZH2 GPR180 SOX21-AS1 BRD7P5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SOX21-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SOX21-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001786378 384 1001 RING1 ZFHX2 GLIS2 POLR2A PATZ1 ZNF547 PRDM10 ZBTB20 EGR2 SP3
ENSR00001786377 -1216 601 ZSCAN5A CTCF SUZ12 ZNF792 GLI4 ZNF2 GLIS2 ZNF547 SCRT2 ZBTB20

Genomic Location for SOX21-AS1 Gene

Chromosome:
13
Start:
94,712,716 bp from pter
End:
94,716,246 bp from pter
Size:
3,531 bases
Orientation:
Plus strand

Genomic View for SOX21-AS1 Gene

Genes around SOX21-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOX21-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOX21-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX21-AS1 Gene

Proteins for SOX21-AS1 Gene

Post-translational modifications for SOX21-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOX21-AS1 Gene

Domains & Families for SOX21-AS1 Gene

Gene Families for SOX21-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SOX21-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOX21-AS1 Gene

Function for SOX21-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOX21-AS1 Gene

Localization for SOX21-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOX21-AS1 Gene

Pathways & Interactions for SOX21-AS1 Gene

SuperPathways for SOX21-AS1 Gene

No Data Available

Interacting Proteins for SOX21-AS1 Gene

Gene Ontology (GO) - Biological Process for SOX21-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOX21-AS1 Gene

Transcripts for SOX21-AS1 Gene

mRNA/cDNA for SOX21-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOX21-AS1 Gene

SOX21 antisense RNA 1 (head to head):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOX21-AS1 Gene

No ASD Table

Relevant External Links for SOX21-AS1 Gene

GeneLoc Exon Structure for
SOX21-AS1
ECgene alternative splicing isoforms for
SOX21-AS1

Expression for SOX21-AS1 Gene

mRNA expression in normal human tissues for SOX21-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOX21-AS1 Gene

This gene is overexpressed in Esophagus - Mucosa (x4.9), Brain - Amygdala (x4.5), Brain - Caudate (basal ganglia) (x4.3), and Brain - Putamen (basal ganglia) (x4.0).

SOURCE GeneReport for Unigene cluster for SOX21-AS1 Gene:

Hs.556071
genes like me logo Genes that share expression patterns with SOX21-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SOX21-AS1 Gene

Orthologs for SOX21-AS1 Gene

Evolution for SOX21-AS1 Gene

ENSEMBL:
Gene Tree for SOX21-AS1 (if available)
TreeFam:
Gene Tree for SOX21-AS1 (if available)

No data available for Orthologs for SOX21-AS1 Gene

Paralogs for SOX21-AS1 Gene

No data available for Paralogs for SOX21-AS1 Gene

Variants for SOX21-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOX21-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10083221 -- 94,715,698(+) AACCA(A/G)CCTTC nc-transcript-variant
rs10083267 -- 94,715,531(+) TGTCT(A/C)TTCAC nc-transcript-variant
rs1060474 -- 94,711,792(-) ACGCT(C/G)CTCAA upstream-variant-2KB, reference, synonymous-codon
rs111321506 -- 94,713,715(+) CATCC(C/T)GGCTA nc-transcript-variant, upstream-variant-2KB
rs112443365 -- 94,711,918(+) CACTC(G/T)GCGCC upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for SOX21-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3325n54 CNV loss 21841781
dgv3326n54 CNV loss 21841781
esv28079 CNV loss 19812545
esv34004 CNV loss 18971310
nsv1070605 CNV deletion 25765185
nsv562766 CNV loss 21841781
nsv826750 CNV gain 20364138
nsv832686 CNV gain 17160897

Relevant External Links for SOX21-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOX21-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOX21-AS1 Gene

Disorders for SOX21-AS1 Gene

Relevant External Links for SOX21-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SOX21-AS1

No disorders were found for SOX21-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOX21-AS1 Gene

Publications for SOX21-AS1 Gene

  1. Aberrant DNA hypermethylation-silenced SOX21-AS1 gene expression and its clinical importance in oral cancer. (PMID: 27933111) Yang C.M. … Tsai K.W. (Clin Epigenetics 2016) 2 3 64
  2. Principles of long noncoding RNA evolution derived from direct comparison of transcriptomes in 17 species. (PMID: 25959816) Hezroni H. … Ulitsky I. (Cell Rep 2015) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SOX21-AS1 Gene

Sources for SOX21-AS1 Gene

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