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Aliases for SOX11 Gene

Aliases for SOX11 Gene

  • SRY (Sex Determining Region Y)-Box 11 2 3
  • SRY-Related HMG-Box Gene 11 2 3
  • SRY (Sex-Determining Region Y)-Box 11 3
  • Transcription Factor SOX-11 3
  • MRD27 3

External Ids for SOX11 Gene

Previous GeneCards Identifiers for SOX11 Gene

  • GC02P005617
  • GC02P005884
  • GC02P005854
  • GC02P005783
  • GC02P005834
  • GC02P005842

Summaries for SOX11 Gene

Entrez Gene Summary for SOX11 Gene

  • This intronless gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. The protein may function in the developing nervous system and play a role in tumorigenesis. [provided by RefSeq, Jul 2008]

GeneCards Summary for SOX11 Gene

SOX11 (SRY (Sex Determining Region Y)-Box 11) is a Protein Coding gene. Diseases associated with SOX11 include mental retardation, autosomal dominant, 27 and coffin-siris syndrome. Among its related pathways are ERK Signaling. GO annotations related to this gene include RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription and RNA polymerase II core promoter sequence-specific DNA binding. An important paralog of this gene is SOX3.

UniProtKB/Swiss-Prot for SOX11 Gene

  • Transcriptional factor involved in the embryonic neurogenesis. May also have a role in tissue modeling during development.

Gene Wiki entry for SOX11 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOX11 Gene

Genomics for SOX11 Gene

Regulatory Elements for SOX11 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SOX11 Gene

Start:
5,692,667 bp from pter
End:
5,701,385 bp from pter
Size:
8,719 bases
Orientation:
Plus strand

Genomic View for SOX11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOX11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOX11 Gene

Proteins for SOX11 Gene

  • Protein details for SOX11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P35716-SOX11_HUMAN
    Recommended name:
    Transcription factor SOX-11
    Protein Accession:
    P35716
    Secondary Accessions:
    • Q4ZFV8

    Protein attributes for SOX11 Gene

    Size:
    441 amino acids
    Molecular mass:
    46679 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SOX11 Gene

Proteomics data for SOX11 Gene at MOPED

Post-translational modifications for SOX11 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SOX11 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for SOX11 Gene

Domains for SOX11 Gene

Gene Families for SOX11 Gene

HGNC:
  • SOX :SRY (sex determining region Y)-boxes

Protein Domains for SOX11 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for SOX11 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P35716

UniProtKB/Swiss-Prot:

SOX11_HUMAN :
  • P35716
Domain:
  • Contains 1 HMG box DNA-binding domain.
genes like me logo Genes that share domains with SOX11: view

Function for SOX11 Gene

Molecular function for SOX11 Gene

GENATLAS Biochemistry:
SRY related HMG box gene 11,expressed in the developing central and peripheral nervous system,somites,developing limbs,facial mesenchyme,kidney,lung,specific postmitotic neuronal subpopulation,modulator of LINE retroposons promoter activity
UniProtKB/Swiss-Prot Function:
Transcriptional factor involved in the embryonic neurogenesis. May also have a role in tissue modeling during development.

Gene Ontology (GO) - Molecular Function for SOX11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000976 transcription regulatory region sequence-specific DNA binding ISS --
GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IDA 21124928
GO:0001071 nucleic acid binding transcription factor activity --
GO:0001077 RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription ISS --
GO:0001105 RNA polymerase II transcription coactivator activity ISS --
genes like me logo Genes that share ontologies with SOX11: view
genes like me logo Genes that share phenotypes with SOX11: view

Animal Models for SOX11 Gene

MGI Knock Outs for SOX11:

Animal Model Products

miRNA for SOX11 Gene

miRTarBase miRNAs that target SOX11

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOX11

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for SOX11 Gene

Localization for SOX11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SOX11 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SOX11 Gene COMPARTMENTS Subcellular localization image for SOX11 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for SOX11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 17934069
GO:0005737 cytoplasm IDA 17934069
genes like me logo Genes that share ontologies with SOX11: view

Pathways for SOX11 Gene

SuperPathways for SOX11 Gene

Superpath Contained pathways
1 ERK Signaling
genes like me logo Genes that share pathways with SOX11: view

Pathways by source for SOX11 Gene

1 Qiagen pathway for SOX11 Gene

Interacting Proteins for SOX11 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000322568%0d%0a9606.ENSP00000355001%0d%0a9606.ENSP00000329170%0d%0a
Selected Interacting proteins: ENSP00000322568 P35716-SOX11_HUMAN for SOX11 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for SOX11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 19808959
GO:0001501 skeletal system development ISS --
GO:0001822 kidney development IEA --
GO:0001841 neural tube formation ISS --
GO:0002089 lens morphogenesis in camera-type eye ISS --
genes like me logo Genes that share ontologies with SOX11: view

Transcripts for SOX11 Gene

mRNA/cDNA for SOX11 Gene

(96) Selected AceView cDNA sequences:
(5) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOX11 Gene

SRY (sex determining region Y)-box 11:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOX11

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOX11 Gene

No ASD Table

Relevant External Links for SOX11 Gene

GeneLoc Exon Structure for
SOX11
ECgene alternative splicing isoforms for
SOX11

Expression for SOX11 Gene

mRNA expression in normal human tissues for SOX11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SOX11 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (6.3), Brain - Hypothalamus (5.8), Brain - Caudate (basal ganglia) (4.5), Brain - Amygdala (4.3), and Brain - Putamen (basal ganglia) (4.1).

Protein differential expression in normal tissues for SOX11 Gene

This gene is overexpressed in Adipocyte (24.4), Pancreatic juice (15.1), Fetal Brain (13.3), and Adrenal (10.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for SOX11 Gene

SOURCE GeneReport for Unigene cluster for SOX11 Gene Hs.432638

mRNA Expression by UniProt/SwissProt for SOX11 Gene

P35716-SOX11_HUMAN
Tissue specificity: Expressed mainly in the nervous system, brain (fetus and adult) and hear (adult).
genes like me logo Genes that share expressions with SOX11: view

In Situ Assay Products

No data available for Expression partners for SOX11 Gene

Orthologs for SOX11 Gene

This gene was present in the common ancestor of animals.

Orthologs for SOX11 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Sox11 35
  • 86.29 (n)
  • 84.77 (a)
Sox11 16
Sox11 36
  • 86 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SOX11 35
  • 99.58 (n)
  • 99.49 (a)
SOX11 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sox11 35
  • 86.13 (n)
  • 84.77 (a)
oppossum
(Monodelphis domestica)
Mammalia SOX11 36
  • 79 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SOX11 36
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves SOX11 35
  • 78.4 (n)
  • 75.7 (a)
SOX11 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SOX11 36
  • 78 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sox11 35
  • 71.84 (n)
  • 72.46 (a)
Str.6881 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.891 35
zebrafish
(Danio rerio)
Actinopterygii -- 35
sox11a 35
  • 69.68 (n)
  • 72.88 (a)
sox11a 36
  • 73 (a)
OneToMany
sox11b 36
  • 68 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.11903 35
fruit fly
(Drosophila melanogaster)
Insecta Sox14 36
  • 17 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea sem-2 36
  • 25 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.10865 36
  • 20 (a)
OneToMany
Species with no ortholog for SOX11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SOX11 Gene

ENSEMBL:
Gene Tree for SOX11 (if available)
TreeFam:
Gene Tree for SOX11 (if available)

Paralogs for SOX11 Gene

Selected SIMAP similar genes for SOX11 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SOX11: view

Variants for SOX11 Gene

Sequence variations from dbSNP and Humsavar for SOX11 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1133965 -- 5,695,200(+) TTGTG(G/T)TTTAA utr-variant-3-prime
rs3841075 -- 5,694,117(-) catca(-/TCA)cCACT utr-variant-3-prime
rs4371338 -- 5,697,898(+) TGAAA(A/G)CCTGA utr-variant-3-prime
rs4383307 -- 5,699,898(+) TAAAG(C/G)AGACC utr-variant-3-prime
rs4600623 -- 5,694,850(+) TATGG(G/T)TTTAC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SOX11 Gene

Variant ID Type Subtype PubMed ID
dgv608n67 CNV Gain 20364138
nsv833292 CNV Gain+Loss 17160897
dgv609n67 CNV Gain 20364138
nsv828241 CNV Gain 20364138
dgv676e199 CNV Deletion 23128226

Relevant External Links for SOX11 Gene

HapMap Linkage Disequilibrium report
SOX11
Human Gene Mutation Database (HGMD)
SOX11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SOX11 Gene

Disorders for SOX11 Gene

UniProtKB/Swiss-Prot

SOX11_HUMAN
  • Mental retardation, autosomal dominant 27 (MRD27) [MIM:615866]: A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. MRD27 patients show dysmorphic facial features, microcephaly, growth deficiency, hypoplastic fifth toenails, and mild intellectual disability. {ECO:0000269 PubMed:24886874}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for SOX11 Gene

(3) Novoseek inferred disease relationships for SOX11 Gene

Disease -log(P) Hits PubMed IDs
burkitt lymphoma 65 1
malignant glioma 53.5 2
lymphoma 20.8 3

Relevant External Links for SOX11

Genetic Association Database (GAD)
SOX11
genes like me logo Genes that share disorders with SOX11: view

No data available for OMIM and Genatlas for SOX11 Gene

Publications for SOX11 Gene

  1. The human SOX11 gene: cloning, chromosomal assignment and tissue expression. (PMID: 8666406) Jay P. … Berta P. (Genomics 1995) 2 3 4 23
  2. Members of the SRY family regulate the human LINE retrotransposons. (PMID: 10606637) TchAcnio T. … Heidmann T. (Nucleic Acids Res. 2000) 3 23
  3. SOX11 expression is highly specific for mantle cell lymphoma and identifies the cyclin D1-negative subtype. (PMID: 19880778) Mozos A. … Campo E. (Haematologica 2009) 3 23
  4. Strong lymphoid nuclear expression of SOX11 transcription factor defines lymphoblastic neoplasms, mantle cell lymphoma and Burkitt's lymphoma. (PMID: 19880779) Dictor M. … Borrebaeck C. (Haematologica 2009) 3 23
  5. Partial cloning of SOX-11 and SOX-12, two new human SOX genes. (PMID: 8332506) Goze C. … Berta P. (Nucleic Acids Res. 1993) 3 4

Products for SOX11 Gene

Sources for SOX11 Gene

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