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Aliases for SOWAHD Gene

Aliases for SOWAHD Gene

  • Sosondowah Ankyrin Repeat Domain Family Member D 2 3
  • Ankyrin Repeat Domain-Containing Protein 58 3 4
  • Protein Sosondowah Homolog D 3 4
  • Ankyrin Repeat Domain 58 2 3
  • ANKRD58 3 4
  • Ankyrin Repeat Domain-Containing Protein SOWAHD 3

External Ids for SOWAHD Gene

Previous HGNC Symbols for SOWAHD Gene

  • ANKRD58

Previous GeneCards Identifiers for SOWAHD Gene

  • GC0XP118893

Summaries for SOWAHD Gene

GeneCards Summary for SOWAHD Gene

SOWAHD (Sosondowah Ankyrin Repeat Domain Family Member D) is a Protein Coding gene. An important paralog of this gene is SOWAHA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOWAHD Gene

Genomics for SOWAHD Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SOWAHD Gene

Start:
119,758,613 bp from pter
End:
119,760,202 bp from pter
Size:
1,590 bases
Orientation:
Plus strand

Genomic View for SOWAHD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOWAHD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOWAHD Gene

No data available for Regulatory Elements for SOWAHD Gene

Proteins for SOWAHD Gene

  • Protein details for SOWAHD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NJG2-SWAHD_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein SOWAHD
    Protein Accession:
    A6NJG2
    Secondary Accessions:

    Protein attributes for SOWAHD Gene

    Size:
    315 amino acids
    Molecular mass:
    33803 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SOWAHD Gene

Proteomics data for SOWAHD Gene at MOPED

Post-translational modifications for SOWAHD Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SOWAHD Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SOWAHD Gene

Domains for SOWAHD Gene

Gene Families for SOWAHD Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for SOWAHD Gene

Graphical View of Domain Structure for InterPro Entry

A6NJG2

UniProtKB/Swiss-Prot:

SWAHD_HUMAN :
  • A6NJG2
Family:
  • Belongs to the SOWAH family.
Similarity:
  • Contains 3 ANK repeats.
genes like me logo Genes that share domains with SOWAHD: view

No data available for Suggested Antigen Peptide Sequences for SOWAHD Gene

Function for SOWAHD Gene

Gene Ontology (GO) - Molecular Function for SOWAHD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SOWAHD: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOWAHD Gene

Localization for SOWAHD Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOWAHD Gene

Pathways for SOWAHD Gene

SuperPathways for SOWAHD Gene

No Data Available

Interacting Proteins for SOWAHD Gene

Gene Ontology (GO) - Biological Process for SOWAHD Gene

None

No data available for Pathways by source for SOWAHD Gene

Transcripts for SOWAHD Gene

mRNA/cDNA for SOWAHD Gene

(11) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOWAHD Gene

Sosondowah ankyrin repeat domain family member D:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHD

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SOWAHD
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOWAHD Gene

No ASD Table

Relevant External Links for SOWAHD Gene

GeneLoc Exon Structure for
SOWAHD
ECgene alternative splicing isoforms for
SOWAHD

Expression for SOWAHD Gene

mRNA expression in normal human tissues for SOWAHD Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SOWAHD Gene

This gene is overexpressed in Whole Blood (12.3), Spleen (8.2), Testis (5.2), and Small Intestine - Terminal Ileum (4.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SOWAHD Gene

SOURCE GeneReport for Unigene cluster for SOWAHD Gene Hs.355223

genes like me logo Genes that share expressions with SOWAHD: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SOWAHD Gene

Orthologs for SOWAHD Gene

This gene was present in the common ancestor of animals.

Orthologs for SOWAHD Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SOWAHD 35
  • 96.84 (n)
  • 94.3 (a)
cow
(Bos Taurus)
Mammalia SOWAHD 35
  • 83.07 (n)
  • 74.44 (a)
SOWAHD 36
  • 69 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sowahd 35
  • 70.85 (n)
  • 63.34 (a)
Sowahd 16
Sowahd 36
  • 48 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sowahd 35
  • 69.52 (n)
  • 62.22 (a)
chicken
(Gallus gallus)
Aves SOWAHD 36
  • 40 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SOWAHD 36
  • 27 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SOWAHD 36
  • 25 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta sowah 36
  • 8 (a)
OneToMany
Species with no ortholog for SOWAHD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SOWAHD Gene

ENSEMBL:
Gene Tree for SOWAHD (if available)
TreeFam:
Gene Tree for SOWAHD (if available)

Paralogs for SOWAHD Gene

Paralogs for SOWAHD Gene

genes like me logo Genes that share paralogs with SOWAHD: view

Variants for SOWAHD Gene

Sequence variations from dbSNP and Humsavar for SOWAHD Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2782221 -- 119,756,640(+) CCCCC(A/G)CCCCC upstream-variant-2KB
rs2782222 -- 119,758,925(+) CCTGC(C/G)GGGTG synonymous-codon, reference
rs2782223 -- 119,759,091(+) TGCTG(A/C)GGGGC synonymous-codon, reference
rs2782224 -- 119,759,174(+) CACGA(C/T)TTCGC synonymous-codon, reference
rs2782225 -- 119,759,450(+) AGCAG(C/T)GGCAC synonymous-codon, reference

Relevant External Links for SOWAHD Gene

HapMap Linkage Disequilibrium report
SOWAHD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SOWAHD Gene

Disorders for SOWAHD Gene

No disorders were found for SOWAHD Gene.

No data available for UniProtKB/Swiss-Prot for SOWAHD Gene

Publications for SOWAHD Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  2. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement. (PMID: 22234889) Maeso I. … Garcia-FernA ndez J. (Genome Res. 2012) 2 3

Products for SOWAHD Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SOWAHD
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHD
    • Block miRNA regulation of SOWAHD using miScript Target Protectors

    Sources for SOWAHD Gene

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