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Aliases for SOWAHB Gene

Aliases for SOWAHB Gene

  • Sosondowah Ankyrin Repeat Domain Family Member B 2 3
  • Ankyrin Repeat Domain-Containing Protein 56 3 4
  • Protein Sosondowah Homolog B 3 4
  • Ankyrin Repeat Domain 56 2 3
  • ANKRD56 3 4
  • Ankyrin Repeat Domain-Containing Protein SOWAHB 3

External Ids for SOWAHB Gene

Previous HGNC Symbols for SOWAHB Gene

  • ANKRD56

Previous GeneCards Identifiers for SOWAHB Gene

  • GC04M077817
  • GC04M077819
  • GC04M077824
  • GC04M077832
  • GC04M077838

Summaries for SOWAHB Gene

GeneCards Summary for SOWAHB Gene

SOWAHB (Sosondowah Ankyrin Repeat Domain Family Member B) is a Protein Coding gene. An important paralog of this gene is SOWAHD.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOWAHB Gene

Genomics for SOWAHB Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SOWAHB Gene

Start:
76,894,928 bp from pter
End:
76,898,147 bp from pter
Size:
3,220 bases
Orientation:
Minus strand

Genomic View for SOWAHB Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOWAHB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOWAHB Gene

No data available for Regulatory Elements for SOWAHB Gene

Proteins for SOWAHB Gene

  • Protein details for SOWAHB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NEL2-SWAHB_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein SOWAHB
    Protein Accession:
    A6NEL2
    Secondary Accessions:
    • B2RP29

    Protein attributes for SOWAHB Gene

    Size:
    793 amino acids
    Molecular mass:
    85742 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SOWAHB Gene

Proteomics data for SOWAHB Gene at MOPED

Post-translational modifications for SOWAHB Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SOWAHB Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SOWAHB Gene

Domains for SOWAHB Gene

Gene Families for SOWAHB Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for SOWAHB Gene

Graphical View of Domain Structure for InterPro Entry

A6NEL2

UniProtKB/Swiss-Prot:

SWAHB_HUMAN :
  • A6NEL2
Family:
  • Belongs to the SOWAH family.
Similarity:
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with SOWAHB: view

No data available for Suggested Antigen Peptide Sequences for SOWAHB Gene

Function for SOWAHB Gene

Gene Ontology (GO) - Molecular Function for SOWAHB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SOWAHB: view

Phenotypes for SOWAHB Gene

genes like me logo Genes that share phenotypes with SOWAHB: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHB

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOWAHB Gene

Localization for SOWAHB Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOWAHB Gene

Pathways for SOWAHB Gene

SuperPathways for SOWAHB Gene

No Data Available

Interacting Proteins for SOWAHB Gene

Gene Ontology (GO) - Biological Process for SOWAHB Gene

None

No data available for Pathways by source for SOWAHB Gene

Transcripts for SOWAHB Gene

mRNA/cDNA for SOWAHB Gene

(11) Selected AceView cDNA sequences:
(2) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOWAHB Gene

Sosondowah ankyrin repeat domain family member B:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHB

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOWAHB Gene

No ASD Table

Relevant External Links for SOWAHB Gene

GeneLoc Exon Structure for
SOWAHB
ECgene alternative splicing isoforms for
SOWAHB

Expression for SOWAHB Gene

mRNA expression in normal human tissues for SOWAHB Gene

mRNA differential expression in normal tissues according to GTEx for SOWAHB Gene

This gene is overexpressed in Liver (6.3), Esophagus - Mucosa (5.4), Brain - Frontal Cortex (BA9) (5.0), Brain - Cortex (5.0), and Colon - Transverse (4.1).

Protein differential expression in normal tissues for SOWAHB Gene

This gene is overexpressed in Pancreas (39.6), Heart (14.9), and Adipocyte (8.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SOWAHB Gene

SOURCE GeneReport for Unigene cluster for SOWAHB Gene Hs.257292

genes like me logo Genes that share expressions with SOWAHB: view

Expression partners for SOWAHB Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SOWAHB Gene

Orthologs for SOWAHB Gene

This gene was present in the common ancestor of animals.

Orthologs for SOWAHB Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SOWAHB 35
  • 79.49 (n)
  • 74.48 (a)
SOWAHB 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SOWAHB 35
  • 80.15 (n)
  • 72.73 (a)
SOWAHB 36
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sowahb 35
  • 77.29 (n)
  • 69.31 (a)
Sowahb 16
Sowahb 36
  • 67 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia SOWAHB 35
  • 98.23 (n)
  • 97.73 (a)
rat
(Rattus norvegicus)
Mammalia Sowahb 35
  • 77.67 (n)
  • 71.55 (a)
oppossum
(Monodelphis domestica)
Mammalia SOWAHB 36
  • 55 (a)
OneToOne
chicken
(Gallus gallus)
Aves SOWAHB 35
  • 61.25 (n)
  • 55.72 (a)
SOWAHB 36
  • 36 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SOWAHB 36
  • 33 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii wufa55b05 35
CR381544.1 36
  • 22 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta sowah 36
  • 11 (a)
OneToMany
Species with no ortholog for SOWAHB:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SOWAHB Gene

ENSEMBL:
Gene Tree for SOWAHB (if available)
TreeFam:
Gene Tree for SOWAHB (if available)

Paralogs for SOWAHB Gene

Paralogs for SOWAHB Gene

genes like me logo Genes that share paralogs with SOWAHB: view

Variants for SOWAHB Gene

Sequence variations from dbSNP and Humsavar for SOWAHB Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs2036132 -- 76,898,623(-) TATTT(C/T)TATAT upstream-variant-2KB
rs2645672 -- 76,894,564(+) GAAAT(A/C)ATTTC downstream-variant-500B
rs2645673 -- 76,895,076(+) ATTTT(A/G)ATTGT utr-variant-3-prime
rs2645674 -- 76,897,049(+) CTGCT(C/T)GTCGC reference, synonymous-codon
rs2645680 -- 76,899,803(-) CCAGC(A/G)AATAA upstream-variant-2KB

Relevant External Links for SOWAHB Gene

HapMap Linkage Disequilibrium report
SOWAHB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SOWAHB Gene

Disorders for SOWAHB Gene

No disorders were found for SOWAHB Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SOWAHB Gene

Publications for SOWAHB Gene

  1. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement. (PMID: 22234889) Maeso I. … Garcia-FernA ndez J. (Genome Res. 2012) 2 3
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  4. An enzyme assisted RP-RPLC approach for in-depth analysis of human liver phosphoproteome. (PMID: 24275569) Bian Y. … Zou H. (J. Proteomics 2014) 4
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SOWAHB Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SOWAHB
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHB
    • Block miRNA regulation of SOWAHB using miScript Target Protectors

    Sources for SOWAHB Gene

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