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Aliases for SOWAHA Gene

Aliases for SOWAHA Gene

  • Sosondowah Ankyrin Repeat Domain Family Member A 2 3
  • Ankyrin Repeat Domain-Containing Protein 43 3 4
  • Protein Sosondowah Homolog A 3 4
  • ANKRD43 3 4
  • Ankyrin Repeat Domain-Containing Protein SOWAHA 3
  • Ankyrin Repeat Domain 43 2

External Ids for SOWAHA Gene

Previous HGNC Symbols for SOWAHA Gene

  • ANKRD43

Previous GeneCards Identifiers for SOWAHA Gene

  • GC05P132150

Summaries for SOWAHA Gene

GeneCards Summary for SOWAHA Gene

SOWAHA (Sosondowah Ankyrin Repeat Domain Family Member A) is a Protein Coding gene. An important paralog of this gene is SOWAHD.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOWAHA Gene

Genomics for SOWAHA Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for SOWAHA Gene

Start:
132,813,341 bp from pter
End:
132,816,797 bp from pter
Size:
3,457 bases
Orientation:
Plus strand

Genomic View for SOWAHA Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOWAHA Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOWAHA Gene

No data available for Regulatory Elements for SOWAHA Gene

Proteins for SOWAHA Gene

  • Protein details for SOWAHA Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q2M3V2-SWAHA_HUMAN
    Recommended name:
    Ankyrin repeat domain-containing protein SOWAHA
    Protein Accession:
    Q2M3V2
    Secondary Accessions:
    • Q8NAE7

    Protein attributes for SOWAHA Gene

    Size:
    549 amino acids
    Molecular mass:
    57443 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAI04772.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAI04776.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAC03975.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

neXtProt entry for SOWAHA Gene

Proteomics data for SOWAHA Gene at MOPED

Post-translational modifications for SOWAHA Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for SOWAHA Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SOWAHA Gene

Domains for SOWAHA Gene

Gene Families for SOWAHA Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for SOWAHA Gene

Graphical View of Domain Structure for InterPro Entry

Q2M3V2

UniProtKB/Swiss-Prot:

SWAHA_HUMAN :
  • Q2M3V2
Family:
  • Belongs to the SOWAH family.
Similarity:
  • Contains 2 ANK repeats.
genes like me logo Genes that share domains with SOWAHA: view

No data available for Suggested Antigen Peptide Sequences for SOWAHA Gene

Function for SOWAHA Gene

Gene Ontology (GO) - Molecular Function for SOWAHA Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SOWAHA: view

Phenotypes for SOWAHA Gene

GenomeRNAi human phenotypes for SOWAHA:
genes like me logo Genes that share phenotypes with SOWAHA: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHA

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOWAHA Gene

Localization for SOWAHA Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOWAHA Gene

Pathways for SOWAHA Gene

SuperPathways for SOWAHA Gene

No Data Available

Interacting Proteins for SOWAHA Gene

Gene Ontology (GO) - Biological Process for SOWAHA Gene

None

No data available for Pathways by source for SOWAHA Gene

Transcripts for SOWAHA Gene

mRNA/cDNA for SOWAHA Gene

(29) Selected AceView cDNA sequences:
(4) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOWAHA Gene

Sosondowah ankyrin repeat domain family member A:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHA

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for SOWAHA
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOWAHA Gene

No ASD Table

Relevant External Links for SOWAHA Gene

GeneLoc Exon Structure for
SOWAHA
ECgene alternative splicing isoforms for
SOWAHA

Expression for SOWAHA Gene

mRNA expression in normal human tissues for SOWAHA Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SOWAHA Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (10.2), Brain - Putamen (basal ganglia) (8.9), Brain - Caudate (basal ganglia) (7.2), Brain - Amygdala (6.0), and Brain - Hippocampus (4.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for SOWAHA Gene

SOURCE GeneReport for Unigene cluster for SOWAHA Gene Hs.13308

genes like me logo Genes that share expressions with SOWAHA: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for SOWAHA Gene

Orthologs for SOWAHA Gene

This gene was present in the common ancestor of animals.

Orthologs for SOWAHA Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SOWAHA 35
  • 99.15 (n)
  • 98.72 (a)
SOWAHA 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SOWAHA 35
  • 81.82 (n)
  • 80 (a)
SOWAHA 36
  • 75 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ANKRD43 35
  • 79.95 (n)
  • 75.19 (a)
SOWAHA 36
  • 73 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sowaha 35
  • 77.67 (n)
  • 78.64 (a)
Sowaha 16
Sowaha 36
  • 73 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SOWAHA 36
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SOWAHA 36
  • 51 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sowaha 35
  • 77.29 (n)
  • 77.35 (a)
chicken
(Gallus gallus)
Aves SOWAHA 36
  • 41 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii SOWAHA (2 of 2) 36
  • 34 (a)
OneToMany
sowahaa 36
  • 30 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta sowah 36
  • 11 (a)
OneToMany
Species with no ortholog for SOWAHA:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SOWAHA Gene

ENSEMBL:
Gene Tree for SOWAHA (if available)
TreeFam:
Gene Tree for SOWAHA (if available)

Paralogs for SOWAHA Gene

Paralogs for SOWAHA Gene

genes like me logo Genes that share paralogs with SOWAHA: view

Variants for SOWAHA Gene

Sequence variations from dbSNP and Humsavar for SOWAHA Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs40274 - 132,813,992(-) GCACC(C/G)GGACC missense, reference
rs40470 - 132,815,256(-) GGAGG(A/C)AAACT reference, missense
rs757537 -- 132,815,379(-) AAAGC(C/T)GGAAA utr-variant-3-prime
rs4266393 -- 132,814,332(+) GAGCC(C/G)GGCCT reference, synonymous-codon
rs4273596 -- 132,815,435(+) TCTTT(C/T)TGAAG utr-variant-3-prime

Relevant External Links for SOWAHA Gene

HapMap Linkage Disequilibrium report
SOWAHA

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SOWAHA Gene

Disorders for SOWAHA Gene

No disorders were found for SOWAHA Gene.

No data available for UniProtKB/Swiss-Prot for SOWAHA Gene

Publications for SOWAHA Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. An ancient genomic regulatory block conserved across bilaterians and its dismantling in tetrapods by retrogene replacement. (PMID: 22234889) Maeso I. … Garcia-FernA ndez J. (Genome Res. 2012) 2 3
  4. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  5. Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. (PMID: 19413330) Gauci S. … Mohammed S. (Anal. Chem. 2009) 4

Products for SOWAHA Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SOWAHA
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SOWAHA
    • Block miRNA regulation of SOWAHA using miScript Target Protectors

    Sources for SOWAHA Gene

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