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Aliases for SOSTDC1 Gene

Aliases for SOSTDC1 Gene

  • Sclerostin Domain Containing 1 2 3
  • ECTODIN 3 4 6
  • USAG1 3 4 6
  • Ectodermal BMP Inhibitor 3 4
  • Uterine Sensitization-Associated Gene 1 Protein 4
  • Uterine Sensitization-Associated Protein-1 3
  • Cystine-Knot Containing Secreted Protein 3
  • Sclerostin Domain-Containing Protein 1 3
  • Ectodin 2
  • CDA019 3
  • USAG-1 4

External Ids for SOSTDC1 Gene

Summaries for SOSTDC1 Gene

Entrez Gene Summary for SOSTDC1 Gene

  • This gene is a member of the sclerostin family and encodes an N-glycosylated, secreted protein with a C-terminal cystine knot-like domain. This protein functions as a bone morphogenetic protein (BMP) antagonist. Specifically, it directly associates with BMPs, prohibiting them from binding their receptors, thereby regulating BMP signaling during cellular proliferation, differentiation, and programmed cell death. [provided by RefSeq, Jul 2008]

GeneCards Summary for SOSTDC1 Gene

SOSTDC1 (Sclerostin Domain Containing 1) is a Protein Coding gene. Diseases associated with SOSTDC1 include sclerosteosis. Among its related pathways are Signaling by BMP. An important paralog of this gene is SOST.

UniProtKB/Swiss-Prot for SOSTDC1 Gene

  • May be involved in the onset of endometrial receptivity for implantation/sensitization for the decidual cell reaction Enhances Wnt signaling and inhibits TGF-beta signaling (By similarity). Directly antagonizes activity of BMP2, BMP4, BMP6 and BMP7 in a dose-dependent manner.

Gene Wiki entry for SOSTDC1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOSTDC1 Gene

Genomics for SOSTDC1 Gene

Genomic Location for SOSTDC1 Gene

Start:
16,461,481 bp from pter
End:
16,530,580 bp from pter
Size:
69,100 bases
Orientation:
Minus strand

Genomic View for SOSTDC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOSTDC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOSTDC1 Gene

Regulatory Elements for SOSTDC1 Gene

Proteins for SOSTDC1 Gene

  • Protein details for SOSTDC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6X4U4-SOSD1_HUMAN
    Recommended name:
    Sclerostin domain-containing protein 1
    Protein Accession:
    Q6X4U4
    Secondary Accessions:
    • A8MUA6
    • Q96HJ7
    • Q9Y3U3

    Protein attributes for SOSTDC1 Gene

    Size:
    206 amino acids
    Molecular mass:
    23307 Da
    Quaternary structure:
    • Interacts with BMP2, BMP4, BMP6 and BMP7 with high affinity.

    Alternative splice isoforms for SOSTDC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SOSTDC1 Gene

Proteomics data for SOSTDC1 Gene at MOPED

Post-translational modifications for SOSTDC1 Gene

  • Glycosylation at Asn47 and Asn173

Other Protein References for SOSTDC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SOSTDC1 Gene

Domains for SOSTDC1 Gene

Protein Domains for SOSTDC1 Gene

UniProtKB/Swiss-Prot:

SOSD1_HUMAN
Domain:
  • Contains 1 CTCK (C-terminal cystine knot-like) domain.:
    • Q6X4U4
Family:
  • Belongs to the sclerostin family.:
    • Q6X4U4
genes like me logo Genes that share domains with SOSTDC1: view

No data available for Gene Families for SOSTDC1 Gene

Function for SOSTDC1 Gene

Molecular function for SOSTDC1 Gene

UniProtKB/Swiss-Prot Function: May be involved in the onset of endometrial receptivity for implantation/sensitization for the decidual cell reaction Enhances Wnt signaling and inhibits TGF-beta signaling (By similarity). Directly antagonizes activity of BMP2, BMP4, BMP6 and BMP7 in a dose-dependent manner.

Gene Ontology (GO) - Molecular Function for SOSTDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with SOSTDC1: view
genes like me logo Genes that share phenotypes with SOSTDC1: view

Animal Models for SOSTDC1 Gene

MGI Knock Outs for SOSTDC1:

miRNA for SOSTDC1 Gene

miRTarBase miRNAs that target SOSTDC1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for SOSTDC1 Gene

Localization for SOSTDC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SOSTDC1 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for SOSTDC1 Gene COMPARTMENTS Subcellular localization image for SOSTDC1 gene
Compartment Confidence
extracellular 5

Gene Ontology (GO) - Cellular Components for SOSTDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
genes like me logo Genes that share ontologies with SOSTDC1: view

Pathways for SOSTDC1 Gene

SuperPathways for SOSTDC1 Gene

Superpath Contained pathways
1 Signaling by BMP
genes like me logo Genes that share pathways with SOSTDC1: view

Pathways by source for SOSTDC1 Gene

1 BioSystems pathway for SOSTDC1 Gene

Gene Ontology (GO) - Biological Process for SOSTDC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007389 pattern specification process IEA --
GO:0010454 negative regulation of cell fate commitment IEA --
GO:0016055 Wnt signaling pathway IEA --
GO:0030514 negative regulation of BMP signaling pathway IEA --
GO:0031069 hair follicle morphogenesis IEA --
genes like me logo Genes that share ontologies with SOSTDC1: view

Compounds for SOSTDC1 Gene

(1) Novoseek inferred chemical compound relationships for SOSTDC1 Gene

Compound -log(P) Hits PubMed IDs
cystine 75.5 4
genes like me logo Genes that share compounds with SOSTDC1: view

Transcripts for SOSTDC1 Gene

mRNA/cDNA for SOSTDC1 Gene

Unigene Clusters for SOSTDC1 Gene

Sclerostin domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOSTDC1 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b
SP1:
SP2:
SP3: -

Relevant External Links for SOSTDC1 Gene

GeneLoc Exon Structure for
SOSTDC1
ECgene alternative splicing isoforms for
SOSTDC1

Expression for SOSTDC1 Gene

mRNA expression in normal human tissues for SOSTDC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SOSTDC1 Gene

This gene is overexpressed in Lung (6.3), Stomach (5.5), Skin - Not Sun Exposed (Suprapubic) (5.0), and Skin - Sun Exposed (Lower leg) (4.4).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for SOSTDC1 Gene

SOURCE GeneReport for Unigene cluster for SOSTDC1 Gene Hs.648106

mRNA Expression by UniProt/SwissProt for SOSTDC1 Gene

Q6X4U4-SOSD1_HUMAN
Tissue specificity: Highly expressed in kidney and weakly in lung.
genes like me logo Genes that share expressions with SOSTDC1: view

Orthologs for SOSTDC1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SOSTDC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SOSTDC1 36
  • 99.84 (n)
  • 99.51 (a)
SOSTDC1 37
  • 89 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SOSTDC1 36
  • 93.69 (n)
  • 95.63 (a)
SOSTDC1 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SOSTDC1 36
  • 96.6 (n)
  • 97.57 (a)
SOSTDC1 37
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sostdc1 36
  • 90.45 (n)
  • 94.66 (a)
Sostdc1 16
Sostdc1 37
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SOSTDC1 37
  • 71 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SOSTDC1 37
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Sostdc1 36
  • 90.94 (n)
  • 94.17 (a)
chicken
(Gallus gallus)
Aves SOSTDC1 36
  • 80.74 (n)
  • 87.86 (a)
SOSTDC1 37
  • 87 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia SOSTDC1 37
  • 82 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia wise-A 36
tropical clawed frog
(Silurana tropicalis)
Amphibia sostdc1 36
  • 70.13 (n)
  • 74.26 (a)
zebrafish
(Danio rerio)
Actinopterygii sostdc1a 36
  • 65.42 (n)
  • 69.52 (a)
sostdc1a 37
  • 62 (a)
OneToOne
Species with no ortholog for SOSTDC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SOSTDC1 Gene

ENSEMBL:
Gene Tree for SOSTDC1 (if available)
TreeFam:
Gene Tree for SOSTDC1 (if available)

Paralogs for SOSTDC1 Gene

Paralogs for SOSTDC1 Gene

Selected SIMAP similar genes for SOSTDC1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with SOSTDC1: view

Variants for SOSTDC1 Gene

Sequence variations from dbSNP and Humsavar for SOSTDC1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs2108136 -- 16,467,695(-) CTTTA(A/G)GCATT upstream-variant-2KB
rs2293672 -- 16,465,316(-) GGTTG(C/G)CATTC intron-variant
rs2528477 -- 16,467,622(-) AAGTA(A/G)GGCAG upstream-variant-2KB
rs2528478 -- 16,466,977(-) CTAGT(C/G)GTTAG upstream-variant-2KB
rs4506094 -- 16,464,553(+) AGTCA(A/T)ATTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SOSTDC1 Gene

Variant ID Type Subtype PubMed ID
dgv2064e1 CNV Complex 17122850

Relevant External Links for SOSTDC1 Gene

HapMap Linkage Disequilibrium report
SOSTDC1

Disorders for SOSTDC1 Gene

(1) MalaCards Diseases for SOSTDC1 Gene

Search for SOSTDC1 Gene in MalaCards »

Relevant External Links for SOSTDC1

Genetic Association Database (GAD)
SOSTDC1
Human Genome Epidemiology (HuGE) Navigator
SOSTDC1
genes like me logo Genes that share disorders with SOSTDC1: view

No data available for UniProtKB/Swiss-Prot for SOSTDC1 Gene

Publications for SOSTDC1 Gene

  1. Identification of a secreted BMP antagonist, ectodin, integrating BMP, FGF, and SHH signals from the tooth enamel knot. (PMID: 14623234) Laurikkala J. … Itoh N. (Dev. Biol. 2003) 3 4 23
  2. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier L.W. … Wilson R.K. (Nature 2003) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. USAG-1: a bone morphogenetic protein antagonist abundantly expressed in the kidney. (PMID: 15020244) Yanagita M. … Sakurai T. (Biochem. Biophys. Res. Commun. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for SOSTDC1 Gene

Sources for SOSTDC1 Gene

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