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Aliases for SOS1-IT1 Gene

Subcategory (RNA class) for SOS1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SOS1-IT1 Gene

  • SOS1 Intronic Transcript 1 2 3 5
  • SOS1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SOS1-IT1 Gene

Previous GeneCards Identifiers for SOS1-IT1 Gene

  • GC02M039221

Summaries for SOS1-IT1 Gene

GeneCards Summary for SOS1-IT1 Gene

SOS1-IT1 (SOS1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SOS1-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOS1-IT1 Gene

Genomics for SOS1-IT1 Gene

GeneHancer (GH) Regulatory Elements for SOS1-IT1 Gene

Promoters and enhancers for SOS1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02I038997 Enhancer 0.8 Ensembl ENCODE 0.8 -3.9 -3890 1.2 BACH1 MAFG SP1 MAFF JUND ZNF316 NFE2 FOSL2 FOS EMSY MORN2 DHX57 SOS1 SOS1-IT1 GC02M039015
GH02I038978 Enhancer 0.9 dbSUPER 0.4 +12.6 12619 5.6 ELF3 PKNOX1 FOXA2 MLX DNMT3B RARA ETS1 CREM THAP11 MIXL1 SOS1 SOS1-IT1 LOC375196
GH02I038959 Promoter/Enhancer 1 Ensembl ENCODE 0.3 +33.3 33326 1.3 RING1 POLR2A MAX EZH2 LOC375196 DHX57 ASS1P2 MORN2 THUMPD2 SRSF7 SOS1 SOS1-IT1 ARHGEF33
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SOS1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SOS1-IT1 Gene

Genomic Locations for SOS1-IT1 Gene
chr2:38,992,279-38,993,857
(GRCh38/hg38)
Size:
1,579 bases
Orientation:
Minus strand
chr2:39,219,420-39,220,998
(GRCh37/hg19)

Genomic View for SOS1-IT1 Gene

Genes around SOS1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOS1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOS1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SOS1-IT1 Gene

Proteins for SOS1-IT1 Gene

Post-translational modifications for SOS1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOS1-IT1 Gene

Domains & Families for SOS1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOS1-IT1 Gene

Function for SOS1-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOS1-IT1 Gene

Localization for SOS1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SOS1-IT1 Gene

Pathways & Interactions for SOS1-IT1 Gene

SuperPathways for SOS1-IT1 Gene

No Data Available

Interacting Proteins for SOS1-IT1 Gene

Gene Ontology (GO) - Biological Process for SOS1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOS1-IT1 Gene

Drugs & Compounds for SOS1-IT1 Gene

No Compound Related Data Available

Transcripts for SOS1-IT1 Gene

mRNA/cDNA for SOS1-IT1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SOS1-IT1 Gene

No ASD Table

Relevant External Links for SOS1-IT1 Gene

GeneLoc Exon Structure for
SOS1-IT1
ECgene alternative splicing isoforms for
SOS1-IT1

Expression for SOS1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOS1-IT1 Gene

genes like me logo Genes that share expression patterns with SOS1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOS1-IT1 Gene

Orthologs for SOS1-IT1 Gene

Evolution for SOS1-IT1 Gene

ENSEMBL:
Gene Tree for SOS1-IT1 (if available)
TreeFam:
Gene Tree for SOS1-IT1 (if available)

No data available for Orthologs for SOS1-IT1 Gene

Paralogs for SOS1-IT1 Gene

No data available for Paralogs for SOS1-IT1 Gene

Variants for SOS1-IT1 Gene

Additional Variant Information for SOS1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOS1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOS1-IT1 Gene

Disorders for SOS1-IT1 Gene

No disorders were found for SOS1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOS1-IT1 Gene

Publications for SOS1-IT1 Gene

  1. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for SOS1-IT1 Gene

Sources for SOS1-IT1 Gene

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