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Aliases for SORCS3-AS1 Gene

Subcategory (RNA class) for SORCS3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SORCS3-AS1 Gene

  • SORCS3 Antisense RNA 1 2 3 5

External Ids for SORCS3-AS1 Gene

Previous GeneCards Identifiers for SORCS3-AS1 Gene

  • GC10M106426

Summaries for SORCS3-AS1 Gene

GeneCards Summary for SORCS3-AS1 Gene

SORCS3-AS1 (SORCS3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SORCS3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SORCS3-AS1 Gene

Genomics for SORCS3-AS1 Gene

Regulatory Elements for SORCS3-AS1 Gene

Enhancers for SORCS3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H103692 1.5 FANTOM5 ENCODE dbSUPER 14.6 +973.5 973476 1 HDGF PKNOX1 ZNF133 ZNF2 GLIS2 ZNF416 ZNF143 ZNF207 ATF7 RUNX3 ENSG00000260461 LOC105378464 LOC101927523 SORCS3-AS1 SFR1 SLK PDCD11 CALHM2 PCGF6 STN1
GH10H103691 1.4 FANTOM5 ENCODE dbSUPER 14.6 +974.6 974599 0 HDGF PKNOX1 ZNF133 SIN3A ZNF2 GLIS2 EGR1 ZNF416 ZNF207 ATF7 ENSG00000260461 PCGF6 LOC101927523 SORCS3-AS1 LOC105378464 SFR1 SLK SH3PXD2A NEURL1 NEURL1-AS1
GH10H103965 1.1 ENCODE 14.6 +697.9 697882 4 PKNOX1 SIN3A DMAP1 YY1 ZNF766 REST SMARCB1 ZNF592 SMARCA4 GLIS1 PDCD11 ENSG00000260461 TAF5 LOC101927523 LOC105378464 SORCS3-AS1 STN1 PCGF6 COL17A1 SLK
GH10H104231 1.1 ENCODE 14.6 +433.9 433916 1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 ZNF143 ZNF207 FOS PDCD11 TAF5 LOC101927523 LOC105378464 SORCS3-AS1 RPEL1 GSTO2 CFAP43 MIR609
GH10H104643 0.6 ENCODE 12.2 +23.4 23359 0 CTCF L3MBTL2 MAX RAD21 ZBTB48 CTBP2 ZBTB26 EZH2 SORCS3-AS1 SORCS3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SORCS3-AS1 Gene

Chromosome:
10
Start:
104,664,608 bp from pter
End:
104,666,216 bp from pter
Size:
1,609 bases
Orientation:
Minus strand

Genomic View for SORCS3-AS1 Gene

Genes around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SORCS3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SORCS3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SORCS3-AS1 Gene

Proteins for SORCS3-AS1 Gene

Post-translational modifications for SORCS3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SORCS3-AS1 Gene

Domains & Families for SORCS3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SORCS3-AS1 Gene

Function for SORCS3-AS1 Gene

Phenotypes From GWAS Catalog for SORCS3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SORCS3-AS1 Gene

Localization for SORCS3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SORCS3-AS1 Gene

Pathways & Interactions for SORCS3-AS1 Gene

SuperPathways for SORCS3-AS1 Gene

No Data Available

Interacting Proteins for SORCS3-AS1 Gene

Gene Ontology (GO) - Biological Process for SORCS3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SORCS3-AS1 Gene

Drugs & Compounds for SORCS3-AS1 Gene

No Compound Related Data Available

Transcripts for SORCS3-AS1 Gene

mRNA/cDNA for SORCS3-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SORCS3-AS1 Gene

SORCS3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SORCS3-AS1 Gene

No ASD Table

Relevant External Links for SORCS3-AS1 Gene

GeneLoc Exon Structure for
SORCS3-AS1
ECgene alternative splicing isoforms for
SORCS3-AS1

Expression for SORCS3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SORCS3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SORCS3-AS1 Gene

This gene is overexpressed in Testis (x52.7).

SOURCE GeneReport for Unigene cluster for SORCS3-AS1 Gene:

Hs.348526
genes like me logo Genes that share expression patterns with SORCS3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SORCS3-AS1 Gene

Orthologs for SORCS3-AS1 Gene

Evolution for SORCS3-AS1 Gene

ENSEMBL:
Gene Tree for SORCS3-AS1 (if available)
TreeFam:
Gene Tree for SORCS3-AS1 (if available)

No data available for Orthologs for SORCS3-AS1 Gene

Paralogs for SORCS3-AS1 Gene

No data available for Paralogs for SORCS3-AS1 Gene

Variants for SORCS3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SORCS3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000123501 -- 104,665,076(+) GATGC(A/C)TGGTG intron-variant, nc-transcript-variant
rs1000127382 -- 104,664,276(+) AACAG(A/G)AGCGG intron-variant
rs1000421657 -- 104,665,353(+) AGAAT(A/G)AGGGA intron-variant
rs1000683777 -- 104,667,685(+) CCCAG(A/G)GTAAA intron-variant, upstream-variant-2KB
rs1001692950 -- 104,666,785(+) TATTT(C/T)TTATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SORCS3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3579100 CNV loss 25503493
nsv831972 CNV gain 17160897

Relevant External Links for SORCS3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SORCS3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SORCS3-AS1 Gene

Disorders for SORCS3-AS1 Gene

Relevant External Links for SORCS3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SORCS3-AS1

No disorders were found for SORCS3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SORCS3-AS1 Gene

Publications for SORCS3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SORCS3-AS1 Gene

Sources for SORCS3-AS1 Gene

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