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Aliases for SORCS3-AS1 Gene

Subcategory (RNA class) for SORCS3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SORCS3-AS1 Gene

  • SORCS3 Antisense RNA 1 2 3 5

External Ids for SORCS3-AS1 Gene

Previous GeneCards Identifiers for SORCS3-AS1 Gene

  • GC10M106426

Summaries for SORCS3-AS1 Gene

GeneCards Summary for SORCS3-AS1 Gene

SORCS3-AS1 (SORCS3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SORCS3-AS1 Gene

Genomics for SORCS3-AS1 Gene

Regulatory Elements for SORCS3-AS1 Gene

Enhancers for SORCS3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F104231 0.5 ENCODE 16.2 +433.9 433916 1.5 ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF207 FOS ZNF263 SP3 SP5 LOC101927523 LOC105378464 SORCS3-AS1 RPEL1 GSTO2 CFAP43 MIR609
GH10F103965 0.8 ENCODE 16.2 +697.9 697882 5.0 PKNOX1 ZFP64 SIN3A DMAP1 YY1 GLIS2 ELK1 ZNF263 ZNF202 REST PDCD11 ENSG00000260461 TAF5 STN1 LOC105378464 LOC101927523 SORCS3-AS1 INA RPEL1 MARCKSL1P1
GH10F103692 0.9 FANTOM5 ENCODE 16.2 +973.5 973476 1.5 HDGF PKNOX1 ZNF133 ZNF2 GLIS2 EGR1 ZNF416 ZNF143 CREM EGR2 ENSG00000260461 LOC105378464 LOC101927523 SORCS3-AS1 SLK PDCD11 CALHM2 STN1 AS3MT ENSG00000222503
GH10F103691 0.9 FANTOM5 ENCODE 16.2 +974.6 974599 0.4 HDGF PKNOX1 WRNIP1 ZNF133 SIN3A ZNF2 GLIS2 EGR1 ZNF416 EGR2 ENSG00000260461 LOC105378464 LOC101927523 SORCS3-AS1 SLK SH3PXD2A NEURL1 NEURL1-AS1 INA ENSG00000222503
GH10F104642 1.2 FANTOM5 12.2 +23.8 23836 0.1 ZBTB48 EZH2 SORCS3-AS1 SORCS3 CFAP43
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SORCS3-AS1 Gene

Chromosome:
10
Start:
104,664,608 bp from pter
End:
104,666,216 bp from pter
Size:
1,609 bases
Orientation:
Minus strand

Genomic View for SORCS3-AS1 Gene

Genes around SORCS3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SORCS3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SORCS3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SORCS3-AS1 Gene

Proteins for SORCS3-AS1 Gene

Post-translational modifications for SORCS3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SORCS3-AS1 Gene

Domains & Families for SORCS3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SORCS3-AS1 Gene

Function for SORCS3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SORCS3-AS1 Gene

Localization for SORCS3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SORCS3-AS1 Gene

Pathways & Interactions for SORCS3-AS1 Gene

SuperPathways for SORCS3-AS1 Gene

No Data Available

Interacting Proteins for SORCS3-AS1 Gene

Gene Ontology (GO) - Biological Process for SORCS3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SORCS3-AS1 Gene

Transcripts for SORCS3-AS1 Gene

mRNA/cDNA for SORCS3-AS1 Gene

(5) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SORCS3-AS1 Gene

SORCS3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SORCS3-AS1 Gene

No ASD Table

Relevant External Links for SORCS3-AS1 Gene

GeneLoc Exon Structure for
SORCS3-AS1
ECgene alternative splicing isoforms for
SORCS3-AS1

Expression for SORCS3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SORCS3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SORCS3-AS1 Gene

This gene is overexpressed in Testis (x52.7).

SOURCE GeneReport for Unigene cluster for SORCS3-AS1 Gene:

Hs.348526
genes like me logo Genes that share expression patterns with SORCS3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SORCS3-AS1 Gene

Orthologs for SORCS3-AS1 Gene

Evolution for SORCS3-AS1 Gene

ENSEMBL:
Gene Tree for SORCS3-AS1 (if available)
TreeFam:
Gene Tree for SORCS3-AS1 (if available)

No data available for Orthologs for SORCS3-AS1 Gene

Paralogs for SORCS3-AS1 Gene

No data available for Paralogs for SORCS3-AS1 Gene

Variants for SORCS3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SORCS3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1034242 -- 104,666,603(+) GCTAT(C/G)CTGTA intron-variant, upstream-variant-2KB
rs10509774 -- 104,667,808(+) CTGGT(C/T)CAAGT intron-variant, upstream-variant-2KB
rs112835633 -- 104,667,417(+) TCTCT(G/T)TCTCT intron-variant, upstream-variant-2KB
rs113358499 -- 104,667,400(+) CTACT(A/G)ATCTC intron-variant, upstream-variant-2KB
rs113751946 -- 104,667,344(+) TTCTC(C/T)CTTCT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SORCS3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3579100 CNV loss 25503493
nsv831972 CNV gain 17160897

Relevant External Links for SORCS3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SORCS3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SORCS3-AS1 Gene

Disorders for SORCS3-AS1 Gene

Relevant External Links for SORCS3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SORCS3-AS1

No disorders were found for SORCS3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SORCS3-AS1 Gene

Publications for SORCS3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SORCS3-AS1 Gene

Sources for SORCS3-AS1 Gene

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