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Aliases & Descriptions for SORBS2
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARGBP2 1 , 2 , 3 ArgBP2 3 FLJ93447 2 KIAA0777 1 , 2 , 3 PRO0618 2 Sorbin 3
Descriptions Arg binding protein 2 2 Arg/Abl interacting protein 2 Arg/Abl-interacting protein 2 2 , 3 sorbin and SH3 domain containing 2 2
Search outside databases for aliases for SORBS2 genePrevious GC identifer: GC04M186884
Summaries for SORBS2 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for SORBS2 : Arg and c-Abl represent the mammalian members of the Abelson family of non-receptorprotein-tyrosine kinases. They interact with the Arg/Abl binding proteins via the SH3 domainspresent in the carboxy end of the latter group of proteins. This gene encodes the sorbin and SH3domain containing 2 protein. It has three C-terminal SH3 domains and an N-terminal sorbin homology(SoHo) domain that interacts with lipid raft proteins. The subcellular localization of thisprotein in epithelial and cardiac muscle cells suggests that it functions as an adapter protein toassemble signaling complexes in stress fibers, and that it is a potential link between Abl familykinases and the actin cytoskeleton. Alternative splicing results in multiple transcript variantsencoding different isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: SRBS2_HUMAN, O94875 Function : Adapter protein that plays a role in the assembling of signaling complexes, being a linkbetween ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promotingubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediatedactivation of PAK1. Isoform 6 increases water and sodium absorption in the intestine andgall-bladder
Gene Wiki entry for SORBS2
Genomic Location for SORBS2
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the SORBS2 gene Entrez Gene cytogenetic band: 4q35.1 Ensembl cytogenetic band: 4q35.1 HGNC cytogenetic band: 4q35.1 SORBS2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 4 GeneLoc Exon Structure
GeneLoc location for GC04M186743:
(about GC identifiers )
Start:
186,743,592 bp from pter
End:
187,114,516 bp from pter
Size:
370,925 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000004.10 NT_022792.17 Proteins for SORBS2
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: SRBS2_HUMAN, O94875 (See
protein sequence )Recommended Name: Sorbin and SH3 domain-containing protein 2 Size : 1100 amino acids; 124108 Da
Subunit : Interacts with ABL, CBL, DNM1, DNM2, FLOT1, MLLT4/afadin, PTK2B/PYK2, SAPAP, SPTAN1,SYNJ1, SYNJ2, VCL/vinculin, and WASF (By similarity). Interacts with ABL1/c-Abl, ABL2/v-Abl/Arg,ACTN, AKT1, CBL, PALLD and PAK1
Subcellular location : Cytoplasm, perinuclear region. Note=Found at the Z-disk sarcomeres, stressfibers, dense bodies and focal adhesion
Secondary accessions : A6NEK9 O60592 O60593 Q96EX0Alternative splicing : 6 isoforms : O94875-1 O94875-2 O94875-3 O94875-4 O94875-5 O94875-6
Post-translational modifications:
Ubiquitinated by CBL1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (8 alternative transcripts):
NP_001139142.1 NP_001139143.1 NP_001139144.1 NP_001139145.1 NP_001139146.1 NP_001139147.1 NP_003594.3 NP_066547.1 ENSEMBL proteins: ENSP00000377158 ENSP00000284776 ENSP00000321983 ENSP00000377162 ENSP00000322182 ENSP00000347852 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 4 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for SORBS2: Assays for SORBS2:
Protein
Domains/ Families for SORBS2(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry O94875 ProtoNet protein and cluster: O94875
2 Blocks protein families : IPB001452 SH3 domain signature IPB003127 Sorbin-like UniProtKB/Swiss-Prot: SRBS2_HUMAN, O94875 Similarity : Contains 3 SH3 domainsSimilarity : Contains 1 SoHo domain
Gene Function for SORBS2
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_001145670 Applied Biosystems Silencer ® siRNAs for SORBS2 Sigma-Aldrich siRNA for SORBS2 Sigma-Aldrich shRNA Panels and shRNA for SORBS2 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 8 ): NM_001145670                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 8 ): NM_001145670                                  untagged cDNA clones in CMV expression vector (see all 10 ): AF396457  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: AK056628 UniProtKB/Swiss-Prot: SRBS2_HUMAN, O94875 Function : Adapter protein that plays a role in the assembling of signaling complexes, being a linkbetween ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promotingubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediatedactivation of PAK1. Isoform 6 increases water and sodium absorption in the intestine andgall-bladder
4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for SORBS2
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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Gene Network CentralTM Interacting Genes and Proteins Network for SORBS2 5/8 Interacting proteins for SORBS2 (ENSP00000347852 3 O94875 2 ) via UniProtKB, MINT, and/or STRING (see all 8
)About this table 1 Gene Ontology (GO) biological process term (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0008150 biological_process
ND --
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Drugs & Compounds for SORBS2 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for SORBS2 1 Novoseek chemical compound relationship for SORBS2 gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
22.51
1
9211900 (1)
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Transcripts for SORBS2(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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shRNA from
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 8 ): NM_001145670 Sigma-Aldrich siRNA for SORBS2 Sigma-Aldrich shRNA Panels and shRNA for SORBS2 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_003603 NM_021069
REFSEQ mRNAs for SORBS2 gene (8 alternative transcripts): NM_001145670.1 NM_001145671.1 NM_001145672.1 NM_001145673.1 NM_001145674.1 NM_001145675.1 NM_003603.5 NM_021069.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003603 NM_021069
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 8 ): NM_001145670                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 8 ): NM_001145670                                  untagged cDNA clones in CMV expression vector (see all 10 ): AF396457  
Additional cDNA sequence: AB018320.1 AF049884.1 AF049885.1 AK000782.1 AK056628.1 AK056758.1 AK225327.1 AK225812.1 AK293400.1 AK295742.1 AK296461.1 AK304653.1 BC011883.1 BC035329.1 CR625998.1 EF139852.1
24/54 DOTS entries (see all 54
): DT.95296114 DT.121264072 DT.91765661 DT.121263879 DT.95296147 DT.454495 DT.102837396 DT.97846879 DT.95296143 DT.95182172 DT.121263881 DT.97799403 DT.307436 DT.121263920 DT.121264079 DT.121264030 DT.121264032 DT.95255892 DT.121263934 DT.304196 DT.70103389 DT.95296176 DT.97778169 DT.121264081
24/394 AceView cDNA sequences (see all 394
):BX486136 AI659181 BC011883 R58128 AW003712 BI226140 CB162502 BQ447625 BF002981 CA391426 CB270104 AA939266 AI377927 CR625998 CK300430 CA389522 AL702536 CB069742 BE407758 CN481856 AA877735 BC030082 AA682476 AL707786
highest scoring ESTs for SORBS2 :AA114994 BC035329 BI755847 AB018320 AK056628 AA001823 AA002027 AA035033 AA035086 AA035370
Unigene Clusters for SORBS2: Sorbin and SH3 domain containing 2 Hs.619806 [show with all ESTs ] , Hs.655143 [show with all ESTs ] Unigene Representative Sequences: BC069025 , NM_021069 GeneLoc Exon Structure 5/26 Alternative Splicing Database (ASD) splice patterns (SP) for SORBS2 (see all 26
) ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5a · 5b · 5c · 5d ^ 6 ^ 7a · 7b · 7c · 7d · 7e ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · SP1 :                               -         -   -   -   -         SP2 :                             -   -         -   -   -     -     -   SP3 :                                                     SP4 :                             -   -         -   -   -           SP5 :                             -   -         -   -   -   -   -      
ExUns: 13b ^ 14 ^ 15 ^ 16a · 16b · 16c · 16d ^ 17 ^ 18a · 18b · 18c ^ 19a · 19b ^ 20 ^ 21 ^ 22a · 22b · 22c ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29 ^ SP1 :   -   -         -     -   -   -             -   -   -     -           -   SP2 :   -   -         -     -   -   -             -   -   -   -             -   SP3 :                           -       -   -   -     -           -   SP4 :                                                     SP5 :   -   -                                                
ExUns: 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 ^ 36 ^ 37 ^ 38a · 38b ^ 39a · 39b SP1 : -             -     -         SP2 : -             -             SP3 : -                         SP4 :                         SP5 :                        
About this scheme ECgene alternative splicing isoforms for SORBS2 6 Ensembl transcripts including schematic representations : ENST00000393523
ENST00000284776
ENST00000319454
ENST00000393528
ENST00000319471
ENST00000355634
Expression for SORBS2
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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SORBS2 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for SORBS2 1 / 2 / 3
15 probe-sets matching SORBS2 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CAGCTTTGCTSOURCE GeneReport for Unigene clusters: Hs.619806 Hs.655143 UniProtKB/Swiss-Prot: SRBS2_HUMAN, O94875 Tissue specificity : Abundantly expressed in heart. In cardiac muscle cells, located in the Z-disksof sarcomere. Also found, but to a lower extent, in small and large intestine, pancreas, thymus,colon, spleen, prostate, testis, brain, ovary and epithelial cells
Orthologs for SORBS2
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for SORBS2 gene from 5 species
About this table Species with no ortholog for SORBS2 ENSEMBL Gene Tree for SORBS2 Paralogs for SORBS2 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for SORBS2 gene SORBS3 2 SORBS1 2 SH3D19 2
SNPs/Variants for SORBS2 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for SORBS2 (up to first 250kb)
Disorders & Mutations for SORBS2
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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Human Genome Epidemiology Navigator: SORBS2 (1 document)
Medical News for SORBS2 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for SORBS2 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/38 PubMed articles for SORBS2 gene (see all 38
): ArgBP2, a multiple Src homology 3 domain-containing, Arg/Abl- interacting protein, is phosphorylated in v-Abl-transformed cells and localized in stress fibers and cardiocyte Z-disks. (PubMed id 9211900) 1, 2, 3, 4 Wang B.... Kruh G.D. (1997) Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9872452) 2, 3, 4 Nagase T....Ohara O. (1998) ArgBP2gamma interacts with Akt and p21-activated kinase-1 and promotes cell survival. (PubMed id 15784622) 3, 4 Yuan Z.Q....Cheng J.Q. (2005) Cbl-ArgBP2 complex mediates ubiquitination and degradation of c-Abl. (PubMed id 12475393) 3, 4 Soubeyran P....Dikic I. (2003) Human sorbin is generated via splicing of an alternative transcript from the ArgBP2 gene locus. (PubMed id 15949647) 1, 3 Hand D. and Eiden L.E. (2005) Recruitment of Pyk2 and Cbl to lipid rafts mediates signals important for actin reorganization in growing neurites. (PubMed id 15128873) 1, 3 Haglund K....Dikic I. (2004) The sorbin homology domain: a motif for the targeting of proteins to lipid rafts. (PubMed id 11481476) 1, 3 Kimura A....Saltiel A.R. (2001) Coeliac disease associated risk variants in TNFAIP3 and REL implicate altered NF-{kappa}B signalling. (PubMed id 19240061) 3 Trynka G....Wijmenga C. (2009) ArgBP2-dependent signaling regulates pancreatic cell migration, adhesion, and tumorigenicity. (PubMed id 18559503) 3 Taieb D....Soubeyran P. (2008) Combining protein-based IMAC, peptide-based IMAC, and MudPIT for efficient phosphoproteomic analysis. (PubMed id 18220336) 4 Cantin G.T....Yates J.R. III (2008)
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Genome Databases showing SORBS2
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing SORBS2
(According to HUGE )
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Specialized Databases showing SORBS2 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for SORBS2 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for SORBS2:
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Aliases for SORBS2
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Function for SORBS2
Location for SORBS2
Medical News for SORBS2
Orthologs for SORBS2
Paralogs for SORBS2
Pathways/Interactions for SORBS2
Proteins for SORBS2
Publications for SORBS2
SNPs for SORBS2
Search Box for SORBS2
Services for SORBS2
Summaries for SORBS2
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009