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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SOGA1 Gene

protein-coding   GIFtS: 42
GCID: GC20M035407

Suppressor Of Glucose, Autophagy Associated 1

(Previous names: chromosome 20 open reading frame 117, KIAA0889)
(Previous symbols: C20orf117, KIAA0889)
  Search for SOGA1
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Suppressor Of Glucose, Autophagy Associated 11 2     Suppressor Of Glucose, Autophagy-Associated Protein 12 3
C20orf1171 2 3     SOGA2 3
KIAA08891 2 3     SOGA Family Member 12 3
Suppressor Of Glucose By Autophagy1 2 3     Chromosome 20 Open Reading Frame 1171
Suppressor Of Glucose From Autophagy1 2     Protein SOGA12

External Ids:    HGNC: 161111   Entrez Gene: 1407102   Ensembl: ENSG000001496397   UniProtKB: O949643   

Export aliases for SOGA1 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SOGA1 Gene: 
SOGA1 (suppressor of glucose, autophagy associated 1) is a protein-coding gene. An important paralog of this gene is SOGA2.

UniProtKB/Swiss-Prot: SOGA1_HUMAN, O94964
Function: Regulates autophagy by playing a role in the reduction of glucose production in an adiponectin- and
insulin-dependent manner (By similarity)

Gene Wiki entry for SOGA1 (C20orf117) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000020.10  NC_018931.2  NT_011362.10  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for SOGA1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSOGA1 promoter sequence
   Search SABiosciences Chromatin IP Primers for SOGA1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SOGA1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20q11.23   Ensembl cytogenetic band:  20q11.23   HGNC cytogenetic band: 20q11.23

SOGA1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SOGA1 gene location

GeneLoc information about chromosome 20         GeneLoc Exon Structure

GeneLoc location for GC20M035407:  view genomic region     (about GC identifiers)

Start:
35,405,845 bp from pter      End:
35,492,089 bp from pter
Size:
86,245 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: SOGA1_HUMAN, O94964 (See protein sequence)
Recommended Name: Protein SOGA1  
Size: 1423 amino acids; 159760 Da
Subunit: The C-terminal 25 kDa form occurs as a monomer (By similarity)
Subcellular location: C-terminal 80 kDa form: Secreted (By similarity). Note=Secreted in primary
hepatocyte-conditioned media (By similarity)
Sequence caution: Sequence=BAA74912.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: A6NK10 Q14DB2 Q5JW51 Q6ZTG8
Alternative splicing: 4 isoforms:  O94964-1   O94964-2   O94964-3   O94964-4   (No experimental confirmation available. Gene prediction based on EST data)

Explore the universe of human proteins at neXtProt for SOGA1: NX_O94964

Explore proteomics data for SOGA1 at MOPED 

Post-translational modifications:

  • UniProtKB: Proteolytically cleaved in primary hepatocytes into a C-terminal 80 kDa form (By similarity). Proteolytically
    cleaved into a C-terminal SOGA 25 kDa form that is detected in plasma
  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_O94964

  • SOGA1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SOGA1 Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_542194.2  NP_954650.2  

    ENSEMBL proteins: 
     ENSP00000237536   ENSP00000433939   ENSP00000279034   ENSP00000350424   ENSP00000413886  

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    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space IDA--

    SOGA1 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR021507 DUF3166

    Graphical View of Domain Structure for InterPro Entry O94964

    ProtoNet protein and cluster: O94964

    UniProtKB/Swiss-Prot: SOGA1_HUMAN, O94964
    Similarity: Belongs to the SOGA family


    SOGA1 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SOGA1_HUMAN, O94964
    Function: Regulates autophagy by playing a role in the reduction of glucose production in an adiponectin- and
    insulin-dependent manner (By similarity)
    Induction: Up-regulated in the plasma by adiponectin in healthy fasting female

    Phenotypes:
         3 GenomeRNAi human phenotypes for SOGA1:

     Increased 8N DNA content  Increased gamma-H2AX phosphory  Increased number of mitotic ce 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for SOGA1 
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SOGA1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SOGA1

    STRING Interaction Network Preview (showing 5 interactants - click image to see more details)

    5/6 Interacting proteins for SOGA1 (O949643 ENSP000002790344) via UniProtKB, MINT, STRING, and/or I2D (see all 6)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MARK4Q96L343, ENSP000003008434I2D: score=2 STRING: ENSP00000300843
    PLEKHA5Q9HAU03, ENSP000002992754I2D: score=2 STRING: ENSP00000299275
    STAT1P422243I2D: score=1 
    UBCENSP000003448184STRING: ENSP00000344818
    SIRT7ENSP000003294664STRING: ENSP00000329466
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0010506regulation of autophagy ISS--

    SOGA1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SOGA1

    Search CenterWatch for drugs/clinical trials and news about SOGA1

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SOGA1 gene (3 alternative transcripts): 
    NM_152257.1  NM_080627.2  NM_199181.2  

    Unigene Cluster for SOGA1:

    Suppressor of glucose, autophagy associated 1
    Hs.460807  [show with all ESTs]
    Unigene Representative Sequence: NM_080627
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000237536(uc021wcx.1) ENST00000465671 ENST00000463491 ENST00000279034(uc002xgd.1)
    ENST00000357779 ENST00000456801
    miRNA
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    SwitchGear 3'UTR luciferase reporter plasmidSOGA1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
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                         Customized lentivirus expression plasmids for stable overexpression of SOGA1 
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for SOGA1
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SOGA1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SOGA1

    Additional mRNA sequence: 

    AK094762.1 AK126630.1 AL833153.1 BC113405.1 BC113433.1 

    11 DOTS entries:

    DT.447504  DT.100018265  DT.91703933  DT.100740201  DT.65288417  DT.40109885  DT.86842817  DT.97795757 
    DT.97803215  DT.91944842  DT.97815663 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SOGA1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AGAATAACTG
    SOGA1 Expression
    About this image


    See SOGA1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SOGA1

    SOURCE GeneReport for Unigene cluster: Hs.460807
        SABiosciences Custom PCR Arrays for SOGA1
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SOGA1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for SOGA1 gene from 4/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Soga11 , 5 RIKEN cDNA 9830001H06 gene5
    suppressor of glucose, autophagy associated 11
    87.28(n)1
    91.89(a)1
      2 (77.91 cM)5
    3207061  NM_001164663.11  NP_001158135.11 
     1570157995 
    chicken
    (Gallus gallus)
    Aves KIAA08891 KIAA0889 76.07(n)
    73.18(a)
      419159  XM_003642499.1  XP_003642547.1 
    lizard
    (Anolis carolinensis)
    Reptilia SOGA16
    Uncharacterized protein
    69(a)
    1 ↔ 1
    4(135171938-135269098)
    zebrafish
    (Danio rerio)
    Actinopterygii si:dkey-14p11.41 si:dkey-14p11.4 58.17(n)
    54.06(a)
      797906  XM_001338326.4  XP_001338362.2 


    ENSEMBL Gene Tree for SOGA1 (if available)
    TreeFam Gene Tree for SOGA1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SOGA1 gene
    SOGA22  SOGA32  
    3 SIMAP similar genes for SOGA1 using alignment to 3 protein entries:     SOGA1_HUMAN (see all proteins):
    C6orf174    SOGA3    SOGA2

    SOGA1 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1723 SNPs in SOGA1 are shown (see all 1723)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 20 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1137527981,2
    C,F--35405500(+) ATTACG/ACTTCA 1 -- int11Minor allele frequency- A:0.50CSA 2
    rs1128031041,2
    C--35405536(+) GTGTC-/TTTTTT 1 -- int11Minor allele frequency- T:0.00CSA 2
    rs1888797531,2
    --35405537(+) TGTCTC/TTTTTT 1 -- int10--------
    rs1416291141,2
    --35405577(+) GAAAAC/GTTCAA 1 -- int10--------
    rs1932358401,2
    --35405788(+) AGATCC/TGCTGG 1 -- int10--------
    rs1827391511,2
    --35406071(+) GCCCAA/CGGATG 1 -- ut310--------
    rs60721771,2
    H--35406160(+) CCAGGC/ATGAGT 1 -- ut314Minor allele frequency- A:0.00NS EA 416
    rs1867892891,2
    --35406255(+) CTGGGA/GGTTGG 1 -- int10--------
    rs1912506561,2
    C--35406272(+) TTTTTC/GGCACT 1 -- int10--------
    rs1842182511,2
    --35406355(+) ATTTCA/TTTCAG 1 -- int10--------

    HapMap Linkage Disequilibrium report for SOGA1 (35405845 - 35492089 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for SOGA1: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SOGA1
    DNA2.0 Custom Variant and Variant Library Synthesis for SOGA1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SOGA1 gene, integrated from 9 sources (see all 18):
    (articles sorted by number of sources associating them with SOGA1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Adiponectin lowers glucose production by increasing SOGA. (PubMed id 20813965)1, 2, 3 Cowerd R.B.... Combs T.P. (2010)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. The DNA sequence and comparative analysis of human chromosome 20. (PubMed id 11780052)1, 2 Deloukas P....Rogers J. (2001)
    5. Prediction of the coding sequences of unidentified human genes. XII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10048485)1, 2 Nagase T....Ohara O. (1998)
    6. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    7. Functional proteomics establishes the interaction of S IRT7 with chromatin remodeling complexes and expands its role in regulation of R NA polymerase I transcription. (PubMed id 22586326)1 Tsai Y.C....Cristea I.M. (2012)
    8. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    9. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    10. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 140710 HGNC: 16111 Ensembl:ENSG00000149639 euGenes: HUgn140710 ECgene: SOGA1
    H-InvDB: SOGA1

    (According to HUGE)
    About This Section
    HUGE: KIAA0889

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SOGA1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SOGA1 gene:
    Search GeneIP for patents involving SOGA1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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