SOD2 Gene
protein-coding GIFtS : 74
GCID: GC06 M160102
superoxide dismutase 2, mitochondrial
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Aliasesfor SOD2 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Superoxide Dismutase 2, Mitochondrial 1 2 Indophenoloxidase B2 EC 1.15.1.13 8 Manganese-Containing Superoxide Dismutase2 MNSOD2 5 Mangano-Superoxide Dismutase2 MVCD62 5 Mn Superoxide Dismutase2 IPOB2 Superoxide Dismutase [Mn], Mitochondrial2
Export aliases for SOD2 gene to outside databases Previous GC identifers: GC06M159539 GC06M159973 GC06M160009 GC06M160012 GC06M160070 GC06M160020 GC06M157570
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Summariesfor SOD2 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for SOD2 : This gene is a member of the iron/manganese superoxide dismutase family. It encodes a mitochondrial protein that forms a homotetramer and binds one manganese ion per subunit. This protein binds to the superoxide byproducts of oxidative phosphorylation and converts them to hydrogen peroxide and diatomic oxygen. Mutations in this gene have been associated with idiopathic cardiomyopathy (IDC), premature aging, sporadic motor neuron disease, and cancer. Alternate transcriptional splice variants, encoding different isoforms, have been characterized. (provided by RefSeq, Jul 2008) UniProtKB/Swiss-Prot: SODM_HUMAN, P04179 Function : Destroys superoxide anion radicals which are normally produced within the cells and which are toxic tobiological systems Gene Wiki entry for SOD2
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Genomic Viewsfor SOD2 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000006.11 NC_018917.1 NT_025741.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the SOD2 gene promoter: ATF-2 AP-2alpha isoform 2 c-Jun AP-2alpha Other transcription factors Search SABiosciences Chromatin IP Primers for SOD2 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SOD2
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 6q25.3 Ensembl cytogenetic band: 6q25.3 HGNC cytogenetic band: 6q25 SOD2 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 6 GeneLoc Exon Structure
GeneLoc location for GC06M160102: view genomic region
(about GC identifiers )
Start:
160,100,096 bp from pter
End:
160,183,561 bp from pter
Size:
83,466 bases
Orientation:
minus strand
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Proteinsfor SOD2 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: SODM_HUMAN, P04179 (See
protein sequence )Recommended Name: Superoxide dismutase [Mn], mitochondrial precursor Size : 222 amino acids; 24722 Da
Cofactor : Binds 1 manganese ion per subunit
Subunit : Homotetramer
Subcellular location : Mitochondrion matrix
6/27 PDB 3D structures from and Proteopedia for SOD2 (see all 27 ):1AP5 (3D)
  1AP6 (3D)
  1EM1 (3D)
  1JA8 (3D)
  1LUV (3D)
  1LUW (3D)
 
Secondary accessions : B2R7R1 B4DL20 E1P5A9 P78434 Q16792 Q5TCM1 Q96EE6 Q9P2Z3Alternative splicing : 2 isoforms : P04179-1 P04179-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for SOD2: NX_P04179 Post-translational modifications:
Nitrated under oxidative stress. Nitration coupled with oxidation inhibits the catalytic activity1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P04179 4/21 DME Specific Peptides for SOD2 (P04179 ) (see all 21 )SOD2 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (3 alternative transcripts):
NP_000627.2 NP_001019636.1 NP_001019637.1 ENSEMBL proteins: ENSP00000356022 ENSP00000440131 ENSP00000446252 ENSP00000356021 ENSP00000442920 ENSP00000404804 ENSP00000337127 ENSP00000441362 ENSP00000445015 ENSP00000439191 ENSP00000384196 ENSP00000406713 Human Recombinant Protein Products: Gene Ontology (GO): 5/6 cellular component terms (GO ID links to tree view) (see all 6 ): About this table
SOD2 for ontologies About GeneDecksing SOD2 Antibody Products: Assay Products for SOD2:
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Protein
Domains / Familiesfor SOD2 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
SOD2 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry P04179 ProtoNet protein and cluster: P04179
1 Blocks protein family : IPB001189 Manganese and iron superoxide dismutase UniProtKB/Swiss-Prot: SODM_HUMAN, P04179 Similarity : Belongs to the iron/manganese superoxide dismutase family
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Functionfor SOD2 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: SODM_HUMAN, P04179 Function : Destroys superoxide anion radicals which are normally produced within the cells and which are toxic tobiological systems Catalytic activity : 2 superoxide + 2 H(+) = O(2) + H(2)O(2)Induction : Expression is regulated by KRIT1
Genatlas biochemistry entry for SOD2 : manganese superoxide dismutase 2,mitochondrial,catabolic pathway of activated oxygen species,free radical detoxification,susceptibility factor for non familial idiopathy dilated cardiomyopathy in Japanese Enzyme Number (IUBMB): EC 1.15.1.1 1 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SOD2 (NM_000636 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SOD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SOD2
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SOD2
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6 ): About this table
SOD2 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for SOD2 :Animal Models: Mouse knock-outs for SOD2: Sod2 tm1Cje Sod2 tm1.1Kskk Sod2 tm1Leb 15/20 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Sod2) (see all 20 ):
SOD2 for phenotypes About GeneDecksing
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Pathways & Interactionsfor SOD2 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/9 super-pathways (see all 9 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Development HGF signaling pathway 2 PEDF Induced Signaling 3 Oxidative Stress 4 Selenium Pathway 5 FoxO family signaling
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for SOD2 1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for SOD2 1 GeneGo (Thomson Reuters) Pathway for SOD2 5 BioSystems Pathways for SOD2 2
Kegg Pathways (Kegg details for SOD2) :
SOD2 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for SOD2 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/135 Interacting proteins for SOD2 (P04179 3 ENSP00000337127 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 135 )About this table Gene Ontology (GO): 5/58 biological process terms (GO ID links to tree view) (see all 58 ): About this table
SOD2 for ontologies About GeneDecksing
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Drugs & Compoundsfor SOD2 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
SOD2 for compounds About GeneDecksing Browse Tocris compounds for SOD2 7 HMDB Compounds for SOD2 About this table 2 DrugBank Compounds for SOD2 About this table 10/144 Novoseek chemical compound relationships for SOD2 gene (see all 144 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
manganese superoxide
99.1
2165
7856748 (7), 11207049 (7), 16365243 (6), 9081096 (5) (see all 99 )
superoxide
91.8
911
18247479 (4), 2230537 (4), 7969912 (4), 10529750 (3) (see all 99 )
zinc superoxide
84.7
77
7856748 (6), 9989524 (2), 10692109 (2), 15258423 (2) (see all 44 )
oxygen
79.1
274
11536448 (4), 1385428 (3), 7914182 (2), 11159050 (2) (see all 99 )
manganese
76.3
184
1550052 (6), 10521117 (6), 12950012 (4), 12215453 (3) (see all 90 )
h2o2
73.6
158
16114557 (5), 9535218 (3), 10919671 (3), 19306099 (3) (see all 84 )
copper
64.4
150
7856748 (6), 14531733 (4), 1793616 (3), 9989524 (2) (see all 85 )
peroxynitrite
63.9
44
11152462 (5), 9603906 (4), 9425011 (2), 19917352 (2) (see all 20 )
n acetylcysteine
60.1
27
11709424 (2), 18829485 (2), 9518260 (1), 18281048 (1) (see all 16 )
3-nitrotyrosine
56.4
10
16895800 (3), 14656937 (2), 9848095 (1), 16765071 (1) (see all 5 )
1 PharmGKB related drug/compound annotation for SOD2 gene About this table Search CenterWatch for drugs/clinical trials and news about SOD2 / SODM
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Transcriptsfor SOD2 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for SOD2 gene (3 alternative transcripts): NM_000636.2 NM_001024465.1 NM_001024466.1 Unigene Cluster for SOD2:
Superoxide dismutase 2, mitochondrial Hs.487046 [show with all ESTs ] Unigene Representative Sequence: BC041951 16 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000367055 ENST00000546260 ENST00000538183 (uc003qsg.3 uc003qsh.3 uc003qsi.1 uc011efu.1 uc011efv.1 )ENST00000367054 ENST00000546087 ENST00000444946 ENST00000337404 ENST00000535459 ENST00000541573 ENST00000540491 ENST00000545162 ENST00000535561 ENST00000537657 ENST00000401980 ENST00000452684 (uc003qsj.3 ) ENST00000535372 (uc003qsp.3 )Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 (see all 5 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 3 ): SOD2 (NM_000636 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for SOD2 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SOD2
Additional cDNA sequence: AK296809.1 AK304766.1 AK313082.1 AL050388.1 AY280718.1 AY280719.1 AY280720.1 AY280721.1 BC012423.1 BC016015.1 BC016934.1 BC035422.1 BC041951.1 BT006967.1 DQ003134.1 M31163.1 M36693.1 X07834.1 X14322.1 X15132.1 X59445.1 Y00472.1 Y00985.1
24/48 DOTS entries (see all 48 ): DT.101985421 DT.95350909
DT.97856570 DT.100828782 DT.91763736 DT.420015 DT.121326878 DT.95189349 DT.121327136 DT.100828766 DT.86851629 DT.121327128 DT.87001758 DT.100692392 DT.100828787 DT.100828790 DT.100688162 DT.100828778 DT.121326777 DT.121327054 DT.121327061 DT.121326809 DT.121326891 DT.99947916 24/538 AceView cDNA sequences (see all 538 ):
N78706 BU621731 CA306232 AW875816 AA363542 AA622960 AA234454 BM976348 AU280001 BE795371 BE397333 BM768463 BQ691900 AI090959 AA361447 CA306165 AI601227 CB111188 AI424625 BQ009368 AA344744 AI339693 BM470662 BM272570 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for SOD2 (see all 8 ) About this scheme ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d · 8e · 8f ^ 9 SP1 :           -   -   -             -   -   -     SP2 :           -   -   -                     SP3 :           -   -   -                     SP4 :           -   -   -   -           -   -   -     SP5 :             -   -                    
ECgene alternative splicing isoforms for SOD2
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Expression for SOD2 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section SOD2 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GTCTTAAAGT
About this image SOD2 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category PureStem™ progenitor E44 (Embryonic Progenitor Cell)Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See SOD2 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for SOD2 SOURCE GeneReport for Unigene cluster: Hs.487046 SABiosciences Expression via Pathway-Focused PCR Arrays including SOD2 (see all 11 ): Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SOD2Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat SOD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SOD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SOD2 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SOD2
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Orthologsfor SOD2 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the last universal common ancestor (LUCA).
Orthologs for SOD2 gene from 11/43 species (see all 43 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Sod21 , 5
superoxide dismutase 2, mitochondrial1, 5
86.94(n) 1 90.09(a) 1
 
17 (8.75 cM) 5 20656 1 NM_013671.3 1 NP_038699.2 1 13007839 5
chicken (Gallus gallus)
Aves
SOD21
superoxide dismutase 2, mitochondrial
79.73(n) 84.68(a)
 
374042 NM_204211.1 NP_989542.1
lizard (Anolis carolinensis)
Reptilia
SOD26
--
80(a)
1 ↔ 1
1(212248300-212258218)
African clawed frog (Xenopus laevis)
Amphibia
Xl.238832
Xenopus laevis manganese superoxide dismutase mRNA, more
78.32(n)
 
AY362041.1
zebrafish (Danio rerio)
Actinopterygii
sod22
superoxide dismutase 2, mitochondrial
77.91(n)
 
335799 BC060895.1
fruit fly (Drosophila melanogaster)
Insecta
Sod21 , 3
superoxide metabolism manganese superoxide dismutase3 Superoxide dismutase 2 (Mn)1
62(a) 3 62.87(n) 1 62.38(a) 1
 
53C153 36878 1 NM_057577.3 1 NP_476925.1 1
worm (Caenorhabditis elegans)
Secernentea
sod-21 , 3
superoxide dismutase3 Protein SOD-21
64(a) (best of 2)3 62.96(n) 1 65.28(a) 1
 
I(8442616-8443737)3 172632 1 NM_059889.3 1 NP_492290.1 1
baker's yeast (Saccharomyces cerevisiae)
Saccharomycetes
SOD2(YHR008C)4 SOD21
Mitochondrial manganese superoxide dismutase, protects more 4 Sod2p1
54.9(n) 1 49.02(a) 1
 
8(123590-122889) 4 856399 1, 4 NP_011872.1 1, 4
thale cress (Arabidopsis thaliana)
eudicotyledons
MSD11
Superoxide dismutase [Mn]
60.98(n) 58.54(a)
 
820263 NM_111929.3 NP_187703.1
rice (Oryza sativa)
Liliopsida
Os.46102
Oryza sativa manganese superoxide dismutase (rmsod1) more
78.13(n)
 
AK070528.1
ENSEMBL Gene Tree for SOD2 (if available)TreeFam Gene Tree for SOD2 (if available)
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Paralogsfor SOD2 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for SOD2 gene 1 SIMAP similar gene for SOD2 using alignment to 16 protein entries: SODM_HUMAN (see all proteins ):DKFZp564M2422
SOD2 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for SOD2 PGOHUM00000244124
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Genomic Variantsfor SOD2 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 6 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for SOD2 (160100096 - 160183561 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for SOD2 1 CNV : 3647 1 Indel : 11272 Human Gene Mutation Database (HGMD) : SOD2 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SOD2
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Disorders
/ Diseasesfor SOD2 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
SOD2 for disorders About GeneDecksing OMIM gene information: 147460 OMIM disorders : 612634 UniProtKB/Swiss-Prot: SODM_HUMAN, P04179
Genetic variation in SOD2 is associated with susceptibility to microvascular complications of diabetes type 6 (MVCD6) [MIM:612634]. These are pathological conditions that develop in numerous tissues and organs as a consequence of diabetes mellitus. They include diabetic retinopathy, diabetic nephropathy leading to end-stage renal disease, and diabetic neuropathy. Diabetic retinopathy remains the major cause of new-onset blindness among diabetic adults. It is characterized by vascular permeability and increased tissue ischemia and angiogenesis 20/247 diseases for SOD2 (see all 247 ): About MalaCards motor neuron disease spermatic cord torsion microvascular complications of diabetes 6 extrinsic allergic alveolitis cardiomyopathy hypersensitivity reaction type ii disease leber hereditary optic neuropathy mitochondrial complex i deficiency mitochondrial encephalomyopathy age related macular degeneration iron overload non-small cell lung carcinoma amyotrophic lateral sclerosis spinocerebellar ataxia type 3 barrett's esophagus multiple chemical sensitivity friedreich ataxia malignant mesothelioma testicular germ cell tumor malignant pleural mesothelioma 2 diseases from the University of Copenhagen DISEASES database for SOD2 :Cancer Vascular disease 10/92 Novoseek disease relationships for SOD2 gene (see all 92 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
necrosis
58.7
129
20514411 (4), 1960995 (3), 2406241 (2), 2222450 (2) (see all 75 )
tumors
54.5
432
12469139 (8), 10919671 (6), 1988135 (6), 7780953 (4) (see all 99 )
amyotrophic lateral sclerosis
49
18
7985495 (2), 9452823 (2), 7699393 (1), 7719145 (1) (see all 12 )
cancer
47.5
158
19074833 (5), 19405048 (4), 19467856 (4), 9926924 (3) (see all 87 )
cell damage
42.9
10
11729237 (3), 7524486 (1), 20107204 (1), 8360707 (1) (see all 7 )
neurodegenerative diseases
42
4
10762167 (1), 8334770 (1), 12618592 (1)
neurodegeneration
40.1
3
17251466 (1), 16485861 (1), 14681883 (1)
shock
35.5
46
15128298 (2), 1337859 (2), 7514009 (2), 8144583 (1) (see all 31 )
breast cancer
35.1
148
15386537 (5), 15184255 (5), 16945136 (4), 17965603 (4) (see all 49 )
merrf
34.2
3
11403514 (1), 11907800 (1)
Genetic Association Database (GAD): SOD2 Human Genome Epidemiology (HuGE) Navigator: SOD2 (302 documents) Export disorders for SOD2 gene to outside databases
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Publicationsfor SOD2 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for SOD2 gene, integrated from 9 sources (see all 1617 ): (articles sorted by number of sources associating them with SOD2) Utopia : connect your pdf to the dynamic world of online information
The polymorphism of manganese superoxide dismutase is associated with diabetic nephropathy in Japanese type 2 diabetic patients. (PubMed id 12624725) 1 , 2 , 4, 9 Nomiyama T....Kawamori R. (2003) Complementary DNA encoding human colon cancer manganese superoxide dismutase and the expression of its gene in human cells. (PubMed id 1988135) 1 , 2 , 9 St Clair D.K. and Holland J.C. (1991) Polymorphism in the manganese superoxide dismutase (MnSOD) gene and risk of breast cancer in young women. (PubMed id 15883815) 1 , 4, 9 Bergman M....Wingren S. (2005) Manganese superoxide dismutase (MnSOD) polymorphism, alpha-tocopherol supplementation and prostate cancer risk in the alpha-tocopherol, beta-carotene cancer prevention study (Finland). (PubMed id 12948282) 1 , 4, 9 Woodson K....Albanes D. (2003) Genetic polymorphism of manganese superoxide dismutase (MnSOD) and breast cancer susceptibility. (PubMed id 15386537) 1 , 4, 9 Kocabas N.A....Karakaya A.E. (2005) Prediction of progression to cirrhosis by a glutathione S-transferase P1 polymorphism in subjects with hereditary hemochromatosis. (PubMed id 16157826) 1 , 4, 9 Stickel F....Schuppan D. (2005) Association between manganese superoxide dismutase (MnSOD) gene polymorphism and breast cancer risk. (PubMed id 11323405) 1 , 4, 9 Mitrunen K....Hirvonen A. (2001) Manganese superoxide dismutase gene polymorphism (V16A) is associated with stages of albuminuria in Korean type 2 diabetic patients. (PubMed id 16324912) 1 , 4, 9 Lee S.J....Kim T.W. (2006) Oxidative stress-related gene polymorphism and the risk of preeclampsia. (PubMed id 15734083) 1 , 4, 9 Kim Y.J....Pang M.G. (2005) Manganese superoxide dismutase polymorphism, plasma antioxidants, cigarette smoking, and risk of breast cancer. (PubMed id 15184255) 1 , 4, 9 Tamimi R.M....Hunter D.J. (2004)
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External Searches for SOD2 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing SOD2 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing SOD2 gene
(According to HUGE )
About This Section --
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Specialized Databases showing SOD2 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for SOD2 Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for SOD2 Genetics and Cytogenetics in Oncology and Haematology NIEHS-SNPs http://egp.gs.washington.edu/data/sod2/ SHMPD http://shmpd.bii.a-star.edu.sg/gene.php?genestart=A&genename=SOD2 Wikipedia http://en.wikipedia.org/wiki/Superoxide_dismutase
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About This Section Patent Information for SOD2 gene: Search GeneIP for patents involving SOD2 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor SOD2 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for SOD2 OriGene shRNA RFP for SOD2 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for SOD2 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for SOD2 OriGene Protein Over-expression Lysate for SOD2 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for SOD2 OriGene 3'-UTR Clone for SOD2 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for SOD2 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for SOD2 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for SOD2 OriGene Custom Protein Services for SOD2 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat SOD2 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing SOD2 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat SOD2 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat SOD2 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat SOD2 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat SOD2
Search Tocris compounds for SOD2
Recombinant Protein for SOD2
SOD2 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SOD2
ThermoFisher Antibodies for SOD2
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat SOD2
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