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Aliases for SOD2 Gene

Aliases for SOD2 Gene

  • Superoxide Dismutase 2 2 3 5
  • Superoxide Dismutase 2, Mitochondrial 2 3
  • EC 1.15.1.1 4 58
  • Manganese-Containing Superoxide Dismutase 3
  • Superoxide Dismutase [Mn], Mitochondrial 3
  • Mangano-Superoxide Dismutase 3
  • Mn Superoxide Dismutase 3
  • Indophenoloxidase B 3
  • Mn-SOD 3
  • IPO-B 3
  • MNSOD 3
  • MVCD6 3
  • IPOB 3

External Ids for SOD2 Gene

Previous GeneCards Identifiers for SOD2 Gene

  • GC06M159539
  • GC06M159973
  • GC06M160009
  • GC06M160012
  • GC06M160070
  • GC06M160020
  • GC06M160102
  • GC06M157570

Summaries for SOD2 Gene

Entrez Gene Summary for SOD2 Gene

  • This gene is a member of the iron/manganese superoxide dismutase family. It encodes a mitochondrial protein that forms a homotetramer and binds one manganese ion per subunit. This protein binds to the superoxide byproducts of oxidative phosphorylation and converts them to hydrogen peroxide and diatomic oxygen. Mutations in this gene have been associated with idiopathic cardiomyopathy (IDC), premature aging, sporadic motor neuron disease, and cancer. Alternative splicing of this gene results in multiple transcript variants. A related pseudogene has been identified on chromosome 1. [provided by RefSeq, Apr 2016]

GeneCards Summary for SOD2 Gene

SOD2 (Superoxide Dismutase 2) is a Protein Coding gene. Diseases associated with SOD2 include Microvascular Complications Of Diabetes 6 and Ischemia. Among its related pathways are Longevity regulating pathway and HIV Life Cycle. GO annotations related to this gene include identical protein binding and oxygen binding.

UniProtKB/Swiss-Prot for SOD2 Gene

  • Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.

Gene Wiki entry for SOD2 Gene

Additional gene information for SOD2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOD2 Gene

Genomics for SOD2 Gene

Regulatory Elements for SOD2 Gene

Enhancers for SOD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H159972 1.9 FANTOM5 Ensembl ENCODE dbSUPER 16.1 -211.4 -211367 3 PKNOX1 ATF1 ARNT FEZF1 DMAP1 YY1 TCF12 ZNF766 GATA2 FOS IGF2R WTAP SOD2 SLC22A1 LOC729603 MAS1 AIRN
GH06H159975 2 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -218.6 -218554 10 HDGF PKNOX1 ATF1 SIN3A ARID4B FEZF1 ZNF2 YY1 TCF12 ZNF121 IGF2R WTAP MAS1 SOD2 ENSG00000236823 SLC22A1 AIRN
GH06H159714 1.7 FANTOM5 Ensembl ENCODE dbSUPER 13.2 +46.0 45955 3 CTCF PKNOX1 ETV1 BACH1 CEBPG RAD21 ZNF507 YY1 FOSL1 FOXK2 IGF2R MRPL18 SOD2 WTAP TCP1 PNLDC1 HNRNPH1P1 RNU4ATAC18P
GH06H159699 1.4 Ensembl ENCODE dbSUPER 13.2 +61.5 61545 3 ATF7 FOS SP3 TSHZ1 REST ZNF623 ZNF518A MYNN STAT3 HNF4A MRPL18 WTAP PNLDC1 SOD2 SOD2-OT1 ACAT2 SNORA29 TCP1 GC06M159698 GC06M159668
GH06H159690 1.4 ENCODE dbSUPER 12.4 +69.1 69130 5 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 MRPL18 WTAP PNLDC1 SOD2-OT1 SOD2 ACAT2 SNORA29 TCP1 SNORA20 LOC105378085
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SOD2 on UCSC Golden Path with GeneCards custom track

Promoters for SOD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000206286 529 1601 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF207

Genomic Location for SOD2 Gene

Chromosome:
6
Start:
159,669,057 bp from pter
End:
159,762,529 bp from pter
Size:
93,473 bases
Orientation:
Minus strand

Genomic View for SOD2 Gene

Genes around SOD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOD2 Gene

Proteins for SOD2 Gene

  • Protein details for SOD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P04179-SODM_HUMAN
    Recommended name:
    Superoxide dismutase [Mn], mitochondrial
    Protein Accession:
    P04179
    Secondary Accessions:
    • B2R7R1
    • B3KUK2
    • B4DL20
    • B4E3K9
    • E1P5A9
    • P78434
    • Q16792
    • Q5TCM1
    • Q96EE6
    • Q9P2Z3

    Protein attributes for SOD2 Gene

    Size:
    222 amino acids
    Molecular mass:
    24722 Da
    Cofactor:
    Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    • Homotetramer.
    • Homotetramer.

    Three dimensional structures from OCA and Proteopedia for SOD2 Gene

    Alternative splice isoforms for SOD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for SOD2 Gene

Selected DME Specific Peptides for SOD2 Gene

P04179:
  • LPDLPYDY
  • WEHAYYL
  • IKRDFGS
  • EEKYQEAL
  • GGGHINH
  • EALAKGDVT
  • DYGALEP
  • KHHAAYV
  • KFKEKLTA
  • FGSFDKF
  • ALQPALKF
  • YVNNLNVTEEKY
  • KHSLPDL
  • NQDPLQGTTGL
  • KGDVTAQ
  • KNVRPDYLKAIW
  • YKNVRPDY
  • LHHSKHHA
  • DVWEHAYY
  • LSPNGGG
  • GSGWGWL

Post-translational modifications for SOD2 Gene

  • Acetylation at Lys-122 decreases enzymatic activity. Deacetylated by SIRT3 upon exposure to ionizing radiations or after long fasting (By similarity).
  • Nitrated under oxidative stress. Nitration coupled with oxidation inhibits the catalytic activity.
  • Ubiquitination at isoforms=2, 4130
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for SOD2 (SOD2)

Assay Products

  • Cloud-Clone Corp. Assay Kits for SOD2

Domains & Families for SOD2 Gene

Gene Families for SOD2 Gene

Human Protein Atlas (HPA):
  • Cancer-related genes
  • Disease related genes
  • Enzymes
  • Plasma proteins
  • Potential drug targets
  • Predicted intracellular proteins

Graphical View of Domain Structure for InterPro Entry

P04179

UniProtKB/Swiss-Prot:

SODM_HUMAN :
  • Belongs to the iron/manganese superoxide dismutase family.
Family:
  • Belongs to the iron/manganese superoxide dismutase family.
genes like me logo Genes that share domains with SOD2: view

Function for SOD2 Gene

Molecular function for SOD2 Gene

GENATLAS Biochemistry:
manganese superoxide dismutase 2,mitochondrial,catabolic pathway of activated oxygen species,free radical detoxification,susceptibility factor for non familial idiopathy dilated cardiomyopathy in Japanese
UniProtKB/Swiss-Prot CatalyticActivity:
2 superoxide + 2 H(+) = O(2) + H(2)O(2).
UniProtKB/Swiss-Prot Function:
Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
UniProtKB/Swiss-Prot Induction:
Expression is regulated by KRIT1.

Enzyme Numbers (IUBMB) for SOD2 Gene

Phenotypes From GWAS Catalog for SOD2 Gene

Gene Ontology (GO) - Molecular Function for SOD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0004784 superoxide dismutase activity IEA,TAS --
GO:0016491 oxidoreductase activity IEA --
GO:0019825 oxygen binding IEA --
GO:0019899 enzyme binding IEA --
genes like me logo Genes that share ontologies with SOD2: view
genes like me logo Genes that share phenotypes with SOD2: view

Animal Models for SOD2 Gene

MGI Knock Outs for SOD2:

Animal Model Products

  • Taconic Biosciences Mouse Models for SOD2

CRISPR Products

miRNA for SOD2 Gene

miRTarBase miRNAs that target SOD2

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for SOD2
  • Applied Biological Materials Clones for SOD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for SOD2 Gene

Localization for SOD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SOD2 Gene

Mitochondrion matrix.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SOD2 gene
Compartment Confidence
extracellular 5
mitochondrion 5
nucleus 2
cytosol 2
plasma membrane 1
cytoskeleton 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for SOD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005739 mitochondrion IDA 12551919
GO:0005743 mitochondrial inner membrane IEA --
GO:0005759 mitochondrial matrix TAS 10511315
GO:0042645 mitochondrial nucleoid IEA --
genes like me logo Genes that share ontologies with SOD2: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for SOD2 Gene

Pathways & Interactions for SOD2 Gene

genes like me logo Genes that share pathways with SOD2: view

Gene Ontology (GO) - Biological Process for SOD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000303 response to superoxide IMP 16179351
GO:0001306 age-dependent response to oxidative stress IEA --
GO:0001315 age-dependent response to reactive oxygen species IMP 14980699
GO:0001666 response to hypoxia IEA --
GO:0001836 release of cytochrome c from mitochondria ISS --
genes like me logo Genes that share ontologies with SOD2: view

No data available for SIGNOR curated interactions for SOD2 Gene

Drugs & Compounds for SOD2 Gene

(82) Drugs for SOD2 Gene - From: DrugBank, PharmGKB, HMDB, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Methotrexate Approved Pharma Folate antagonist,inhibits DFHR 1576
Paclitaxel Approved, Vet_approved Pharma Tubulin and Bcl2 inhibitor, Taxanes 2948
Copper Approved Pharma 188
Oxygen Approved, Vet_approved Pharma 0
Zinc Approved Pharma 2359

(70) Additional Compounds for SOD2 Gene - From: HMDB and Novoseek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
superoxide
  • Dioxidanidyl
  • Dioxide(1-)
  • Hyperoxid
  • Superoxide
  • Superoxide anion
11062-77-4
Fe2+
  • Armco iron
  • Carbonyl iron
  • FE
  • Ferrovac e
  • Hematite
15438-31-0
Hydrogen Ion
  • Hydrogen cation
  • Hydron
  • Proton
genes like me logo Genes that share compounds with SOD2: view

Transcripts for SOD2 Gene

Unigene Clusters for SOD2 Gene

Superoxide dismutase 2, mitochondrial:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for SOD2
  • Applied Biological Materials Clones for SOD2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SOD2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d · 8e · 8f ^ 9
SP1: - - - - - -
SP2: - - -
SP3: - - -
SP4: - - - - - - -
SP5: - -
SP6: -
SP7: - -
SP8:

Relevant External Links for SOD2 Gene

GeneLoc Exon Structure for
SOD2
ECgene alternative splicing isoforms for
SOD2

Expression for SOD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SOD2 Gene

mRNA differential expression in normal tissues according to GTEx for SOD2 Gene

This gene is overexpressed in Muscle - Skeletal (x16.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for SOD2 Gene



Protein tissue co-expression partners for SOD2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SOD2 Gene:

SOD2

SOURCE GeneReport for Unigene cluster for SOD2 Gene:

Hs.487046

Evidence on tissue expression from TISSUES for SOD2 Gene

  • Nervous system(5)
  • Liver(4.9)
  • Lung(4.9)
  • Heart(4.7)
  • Intestine(4.6)
  • Muscle(4.1)
  • Blood(3.8)
  • Kidney(3.6)
  • Bone marrow(3)
  • Stomach(2.9)
  • Pancreas(2.7)
  • Spleen(2.6)
  • Adrenal gland(2.4)
  • Skin(2.2)
  • Eye(2.1)
  • Gall bladder(2.1)
  • Bone(2)
genes like me logo Genes that share expression patterns with SOD2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SOD2 Gene

Orthologs for SOD2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for SOD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SOD2 33 34
  • 99.83 (n)
dog
(Canis familiaris)
Mammalia SOD2 33 34
  • 88.59 (n)
cow
(Bos Taurus)
Mammalia SOD2 33 34
  • 88.29 (n)
oppossum
(Monodelphis domestica)
Mammalia SOD2 34
  • 88 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia SOD2 34
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Sod2 33 16 34
  • 86.94 (n)
rat
(Rattus norvegicus)
Mammalia Sod2 33
  • 86.04 (n)
chicken
(Gallus gallus)
Aves SOD2 33 34
  • 79.73 (n)
lizard
(Anolis carolinensis)
Reptilia SOD2 34
  • 81 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia sod2 33
  • 72.82 (n)
Str.15249 33
African clawed frog
(Xenopus laevis)
Amphibia Xl.23883 33
zebrafish
(Danio rerio)
Actinopterygii sod2 33 34
  • 72.58 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.13830 33
African malaria mosquito
(Anopheles gambiae)
Insecta MNSOD1 33
  • 63.62 (n)
fruit fly
(Drosophila melanogaster)
Insecta Sod2 35 33 34
  • 62.87 (n)
worm
(Caenorhabditis elegans)
Secernentea sod-2 35 33 34
  • 61.84 (n)
sod-3 35 34
  • 61 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADR160W 33
  • 55.61 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0E03609g 33
  • 55.4 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SOD2 33 34 36
  • 55.07 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons MSD1 33
  • 60.66 (n)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.7748 33
rice
(Oryza sativa)
Liliopsida Os05g0323900 33
  • 62.48 (n)
Os.4610 33
corn
(Zea mays)
Liliopsida Zm.1987 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2788 34
  • 71 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU09560 33
  • 57.01 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC1486.01 33
  • 56.54 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2423 33
Species where no ortholog for SOD2 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for SOD2 Gene

ENSEMBL:
Gene Tree for SOD2 (if available)
TreeFam:
Gene Tree for SOD2 (if available)

Paralogs for SOD2 Gene

Pseudogenes.org Pseudogenes for SOD2 Gene

genes like me logo Genes that share paralogs with SOD2: view

No data available for Paralogs for SOD2 Gene

Variants for SOD2 Gene

Sequence variations from dbSNP and Humsavar for SOD2 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs4880 drug-response 159,692,840(-) TCCGG(C/T)TTTGG reference, missense, utr-variant-5-prime
rs1000024361 -- 159,731,391(+) TGAGC(A/C)CAAGA intron-variant
rs1000045877 -- 159,756,818(+) AGGCT(G/T)GCCTC intron-variant, downstream-variant-500B
rs1000046560 -- 159,714,348(+) GCTGA(C/T)ATATT intron-variant
rs1000138692 -- 159,741,814(+) GAGAC(A/C)CCATC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SOD2 Gene

Variant ID Type Subtype PubMed ID
esv2759483 CNV gain 17122850
esv33081 CNV gain 17666407

Variation tolerance for SOD2 Gene

Residual Variation Intolerance Score: 43.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.35; 85.37% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for SOD2 Gene

Human Gene Mutation Database (HGMD)
SOD2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SOD2 Gene

Disorders for SOD2 Gene

MalaCards: The human disease database

(22) MalaCards diseases for SOD2 Gene - From: HGMD, OMIM, ClinVar, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
microvascular complications of diabetes 6
  • diabetic nephropathy
ischemia
  • acute coronary syndrome
diabetic polyneuropathy
  • diabetes mellitus with polyneuropathy
extrinsic allergic alveolitis
  • alveolitis
lacrimal gland adenoid cystic carcinoma
  • adenoid cystic carcinoma of lacrimal gland
- elite association - COSMIC cancer census association via MalaCards
Search SOD2 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

SODM_HUMAN
  • Microvascular complications of diabetes 6 (MVCD6) [MIM:612634]: Pathological conditions that develop in numerous tissues and organs as a consequence of diabetes mellitus. They include diabetic retinopathy, diabetic nephropathy leading to end-stage renal disease, and diabetic neuropathy. Diabetic retinopathy remains the major cause of new-onset blindness among diabetic adults. It is characterized by vascular permeability and increased tissue ischemia and angiogenesis. {ECO:0000269 PubMed:12624725}. Note=Disease susceptibility is associated with variations affecting the gene represented in this entry.

Relevant External Links for SOD2

Genetic Association Database (GAD)
SOD2
Human Genome Epidemiology (HuGE) Navigator
SOD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SOD2
genes like me logo Genes that share disorders with SOD2: view

No data available for Genatlas for SOD2 Gene

Publications for SOD2 Gene

  1. The polymorphism of manganese superoxide dismutase is associated with diabetic nephropathy in Japanese type 2 diabetic patients. (PMID: 12624725) Nomiyama T … Kawamori R (Journal of human genetics 2003) 3 4 22 45 60
  2. Manganese superoxide dismutase (MnSOD) gene (Ala-9Val, Ile58Thr) polymorphism in patients with age-related macular degeneration (AMD). (PMID: 20357718) Kowalski M … Szemraj J (Medical science monitor : international medical journal of experimental and clinical research 2010) 3 22 45 60
  3. Genetic variants in selenoprotein genes increase risk of colorectal cancer. (PMID: 20378690) Méplan C … Hesketh JE (Carcinogenesis 2010) 3 22 45 60
  4. Association between manganese superoxide dismutase polymorphism and risk of lung cancer. (PMID: 19167605) Zejnilovic J … Isbir T (Cancer genetics and cytogenetics 2009) 3 22 45 60
  5. MnSOD genotype and prostate cancer risk as a function of NAT genotype and smoking status. (PMID: 19368118) Iguchi T … Haas GP (In vivo (Athens, Greece) 2009) 3 22 45 60

Products for SOD2 Gene

  • Addgene plasmids for SOD2

Sources for SOD2 Gene

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