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Aliases for SOD1P1 Gene

Subcategory (RNA class) for SOD1P1 Gene

lncRNA

Aliases for SOD1P1 Gene

  • Superoxide Dismutase 1, Soluble Pseudogene 1 2 3 5

External Ids for SOD1P1 Gene

ORGUL Members for SOD1P1 Gene

Previous GeneCards Identifiers for SOD1P1 Gene

  • GC06M053065

Summaries for SOD1P1 Gene

GeneCards Summary for SOD1P1 Gene

SOD1P1 (Superoxide Dismutase 1, Soluble Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOD1P1 Gene

Genomics for SOD1P1 Gene

Regulatory Elements for SOD1P1 Gene

Enhancers for SOD1P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F053192 0.9 Ensembl ENCODE 0.8 +4.3 4261 0.6 ZNF263 ZNF316 MAFF RNF2 SCRT2 MAFG NR3C1 PRDM1 EMSY ENSG00000218713 SOD1P1 RNU6-464P GC06M053154
GH06F053199 0.7 ENCODE 0.8 -2.3 -2259 0.2 CBFB JUNB EP300 EED IKZF1 TARDBP HMBOX1 ETV6 ZBTB33 PRDM1 SOD1P1 ENSG00000218713
GH06F053171 1.6 FANTOM5 Ensembl ENCODE 0.3 +25.0 24988 0.5 HDGF MLX WRNIP1 ARID4B ZNF48 BRCA1 ZNF2 ZNF207 ZNF143 MXD4 ENSG00000218713 GC06M053154 RNU6-464P SOD1P1
GH06F053187 1 Ensembl ENCODE 0.4 +8.9 8946 1.6 CTCF ZNF384 RAD21 ZFHX2 ZNF316 ETV6 MAFK EGR2 ZNF263 ZNF362 ENSG00000218713 SOD1P1 GC06M053154 RNU6-464P
GH06F053203 0.6 Ensembl 0.4 -6.6 -6642 0.4 GATAD2A CBX3 ATF3 HLF ADNP ATF2 ENSG00000218713 SOD1P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SOD1P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SOD1P1 Gene

Chromosome:
6
Start:
53,196,720 bp from pter
End:
53,197,159 bp from pter
Size:
440 bases
Orientation:
Minus strand

Genomic View for SOD1P1 Gene

Genes around SOD1P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOD1P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOD1P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOD1P1 Gene

Proteins for SOD1P1 Gene

Post-translational modifications for SOD1P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOD1P1 Gene

Domains & Families for SOD1P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOD1P1 Gene

Function for SOD1P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOD1P1 Gene

Localization for SOD1P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOD1P1 Gene

Pathways & Interactions for SOD1P1 Gene

SuperPathways for SOD1P1 Gene

No Data Available

Interacting Proteins for SOD1P1 Gene

Gene Ontology (GO) - Biological Process for SOD1P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOD1P1 Gene

Transcripts for SOD1P1 Gene

mRNA/cDNA for SOD1P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SOD1P1 Gene

No ASD Table

Relevant External Links for SOD1P1 Gene

GeneLoc Exon Structure for
SOD1P1
ECgene alternative splicing isoforms for
SOD1P1

Expression for SOD1P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SOD1P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SOD1P1 Gene:

SOD1P1
genes like me logo Genes that share expression patterns with SOD1P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SOD1P1 Gene

Orthologs for SOD1P1 Gene

Evolution for SOD1P1 Gene

ENSEMBL:
Gene Tree for SOD1P1 (if available)
TreeFam:
Gene Tree for SOD1P1 (if available)

No data available for Orthologs for SOD1P1 Gene

Paralogs for SOD1P1 Gene

No data available for Paralogs for SOD1P1 Gene

Variants for SOD1P1 Gene

Relevant External Links for SOD1P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOD1P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SOD1P1 Gene

Disorders for SOD1P1 Gene

No disorders were found for SOD1P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SOD1P1 Gene

Publications for SOD1P1 Gene

No publications were found for SOD1P1 Gene.

Products for SOD1P1 Gene

Sources for SOD1P1 Gene

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