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Aliases for SOCS2-AS1 Gene

Subcategory (RNA class) for SOCS2-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SOCS2-AS1 Gene

  • SOCS2 Antisense RNA 1 2 3
  • SOCS2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SOCS2-AS1 Gene

ORGUL Members for SOCS2-AS1 Gene

Previous GeneCards Identifiers for SOCS2-AS1 Gene

  • GC12M093938

Summaries for SOCS2-AS1 Gene

GeneCards Summary for SOCS2-AS1 Gene

SOCS2-AS1 (SOCS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOCS2-AS1 Gene

Genomics for SOCS2-AS1 Gene

Genomic Location for SOCS2-AS1 Gene

Start:
93,542,463 bp from pter
End:
93,571,768 bp from pter
Size:
29,306 bases
Orientation:
Minus strand

Genomic View for SOCS2-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SOCS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOCS2-AS1 Gene

No data available for Regulatory Elements for SOCS2-AS1 Gene

Proteins for SOCS2-AS1 Gene

Post-translational modifications for SOCS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOCS2-AS1 Gene

Domains for SOCS2-AS1 Gene

Gene Families for SOCS2-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SOCS2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOCS2-AS1 Gene

Function for SOCS2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SOCS2-AS1 Gene

Localization for SOCS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOCS2-AS1 Gene

Pathways for SOCS2-AS1 Gene

SuperPathways for SOCS2-AS1 Gene

No Data Available

Interacting Proteins for SOCS2-AS1 Gene

Gene Ontology (GO) - Biological Process for SOCS2-AS1 Gene

None

No data available for Pathways by source for SOCS2-AS1 Gene

Transcripts for SOCS2-AS1 Gene

mRNA/cDNA for SOCS2-AS1 Gene

(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOCS2-AS1 Gene

SOCS2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOCS2-AS1 Gene

No ASD Table

Relevant External Links for SOCS2-AS1 Gene

GeneLoc Exon Structure for
SOCS2-AS1
ECgene alternative splicing isoforms for
SOCS2-AS1

Expression for SOCS2-AS1 Gene

mRNA expression in normal human tissues for SOCS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOCS2-AS1 Gene

This gene is overexpressed in Prostate (6.7), Cervix - Ectocervix (4.4), and Uterus (4.1).

SOURCE GeneReport for Unigene cluster for SOCS2-AS1 Gene Hs.602278

genes like me logo Genes that share expressions with SOCS2-AS1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for SOCS2-AS1 Gene

Orthologs for SOCS2-AS1 Gene

Evolution for SOCS2-AS1 Gene

ENSEMBL:
Gene Tree for SOCS2-AS1 (if available)
TreeFam:
Gene Tree for SOCS2-AS1 (if available)

No data available for Orthologs for SOCS2-AS1 Gene

Paralogs for SOCS2-AS1 Gene

No data available for Paralogs for SOCS2-AS1 Gene

Variants for SOCS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOCS2-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs3869307 -- 93,566,116(-) GCCAT(A/G)AGGTC intron-variant
rs3869308 -- 93,566,142(-) ACCAG(A/G)TTTCT intron-variant
rs4761732 -- 93,566,452(+) CCCAT(C/T)CTGGG intron-variant
rs7963868 -- 93,567,248(+) GTTAC(C/T)CTATC intron-variant
rs10777530 -- 93,567,334(+) TAGAA(C/T)GTCTG intron-variant

Relevant External Links for SOCS2-AS1 Gene

HapMap Linkage Disequilibrium report
SOCS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for SOCS2-AS1 Gene

Disorders for SOCS2-AS1 Gene

No disorders were found for SOCS2-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for SOCS2-AS1 Gene

Publications for SOCS2-AS1 Gene

  1. Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term. (PMID: 24168098) Romero R. … Lipovich L. (J. Matern. Fetal. Neonatal. Med. 2014) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SOCS2-AS1 Gene

Sources for SOCS2-AS1 Gene

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