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Aliases for SOCS2-AS1 Gene

Subcategory (RNA class) for SOCS2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SOCS2-AS1 Gene

  • SOCS2 Antisense RNA 1 2 3 5
  • SOCS2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SOCS2-AS1 Gene

Previous GeneCards Identifiers for SOCS2-AS1 Gene

  • GC12M093938

Summaries for SOCS2-AS1 Gene

GeneCards Summary for SOCS2-AS1 Gene

SOCS2-AS1 (SOCS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SOCS2-AS1 Gene

Genomics for SOCS2-AS1 Gene

Regulatory Elements for SOCS2-AS1 Gene

Enhancers for SOCS2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F093740 1.1 FANTOM5 Ensembl ENCODE 12.9 -170.5 -170500 4.3 ATF1 PKNOX1 ARNT SIN3A FEZF1 ZNF2 YY1 ELK1 GATA2 KLF13 SOCS2 SOCS2-AS1 ENSG00000258365 NUDT4 GC12M093698 LOC101928731
GH12F093590 1.3 FANTOM5 Ensembl ENCODE 12.6 -21.3 -21307 5.5 ATF1 PKNOX1 CREB3L1 SIN3A YY1 KLF7 KLF13 JUNB NCOA1 REST SOCS2 SOCS2-AS1 LOC642969
GH12F093503 0.6 ENCODE 12.3 +68.5 68529 0.2 CTCF ZNF654 MAFG ZFP37 REST RAD21 ZNF664 MAFF SMC3 SOCS2 SOCS2-AS1 RN7SL737P MRPL42
GH12F094098 1.3 FANTOM5 Ensembl ENCODE 11.6 -528.9 -528931 4.6 PKNOX1 ATF1 ARNT CREB3L1 ARID4B SIN3A ZNF48 ZNF416 ZNF143 FOS SOCS2 SOCS2-AS1 PLXNC1 LOC441644 LOC105369913
GH12F093723 1.1 Ensembl ENCODE 10.9 -151.7 -151715 0.7 ZNF217 GATA3 CTBP1 NR2F1 CUX1 NR2F6 FOS SETDB1 SOCS2 SOCS2-AS1 ENSG00000258365 LOC101928731 CRADD
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SOCS2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000434951 -132 5000 PKNOX1 ARNT CREB3L1 MLX SIN3A FEZF1 ZNF2 YY1 ZNF143 KLF13

Genomic Location for SOCS2-AS1 Gene

Chromosome:
12
Start:
93,542,463 bp from pter
End:
93,571,768 bp from pter
Size:
29,306 bases
Orientation:
Minus strand

Genomic View for SOCS2-AS1 Gene

Genes around SOCS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SOCS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SOCS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SOCS2-AS1 Gene

Proteins for SOCS2-AS1 Gene

Post-translational modifications for SOCS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SOCS2-AS1 Gene

Domains & Families for SOCS2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SOCS2-AS1 Gene

Function for SOCS2-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SOCS2-AS1 Gene

Localization for SOCS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SOCS2-AS1 Gene

Pathways & Interactions for SOCS2-AS1 Gene

SuperPathways for SOCS2-AS1 Gene

No Data Available

Interacting Proteins for SOCS2-AS1 Gene

Gene Ontology (GO) - Biological Process for SOCS2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SOCS2-AS1 Gene

Transcripts for SOCS2-AS1 Gene

mRNA/cDNA for SOCS2-AS1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SOCS2-AS1 Gene

SOCS2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SOCS2-AS1 Gene

No ASD Table

Relevant External Links for SOCS2-AS1 Gene

GeneLoc Exon Structure for
SOCS2-AS1
ECgene alternative splicing isoforms for
SOCS2-AS1

Expression for SOCS2-AS1 Gene

mRNA expression in normal human tissues for SOCS2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SOCS2-AS1 Gene

This gene is overexpressed in Prostate (x6.7), Cervix - Ectocervix (x4.4), and Uterus (x4.1).

SOURCE GeneReport for Unigene cluster for SOCS2-AS1 Gene:

Hs.602278
genes like me logo Genes that share expression patterns with SOCS2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SOCS2-AS1 Gene

Orthologs for SOCS2-AS1 Gene

Evolution for SOCS2-AS1 Gene

ENSEMBL:
Gene Tree for SOCS2-AS1 (if available)
TreeFam:
Gene Tree for SOCS2-AS1 (if available)

No data available for Orthologs for SOCS2-AS1 Gene

Paralogs for SOCS2-AS1 Gene

No data available for Paralogs for SOCS2-AS1 Gene

Variants for SOCS2-AS1 Gene

Sequence variations from dbSNP and Humsavar for SOCS2-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10745656 -- 93,571,609(+) CCGAG(A/G)GTGGA intron-variant, upstream-variant-2KB
rs10777530 -- 93,567,334(+) TAGAA(C/T)GTCTG intron-variant
rs10859532 -- 93,567,141(+) GTGGT(C/G)GTACG nc-transcript-variant
rs11107111 -- 93,568,607(+) GACGG(G/T)GTTTC intron-variant, upstream-variant-2KB
rs112467440 -- 93,566,706(+) GAGAA(A/T)GCCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SOCS2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2791n54 CNV loss 21841781
dgv2792n54 CNV gain 21841781
esv25615 CNV loss 19812545
nsv559778 CNV gain 21841781
nsv7234 OTHER inversion 18451855

Relevant External Links for SOCS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SOCS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SOCS2-AS1 Gene

Disorders for SOCS2-AS1 Gene

Relevant External Links for SOCS2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SOCS2-AS1

No disorders were found for SOCS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SOCS2-AS1 Gene

Publications for SOCS2-AS1 Gene

  1. Transcriptome interrogation of human myometrium identifies differentially expressed sense-antisense pairs of protein-coding and long non-coding RNA genes in spontaneous labor at term. (PMID: 24168098) Romero R. … Lipovich L. (J. Matern. Fetal. Neonatal. Med. 2014) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SOCS2-AS1 Gene

Sources for SOCS2-AS1 Gene

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