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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

SNX32 Gene

protein-coding   GIFtS: 46
GCID: GC11P065601

Sorting Nexin 32

(Previous name: sorting nexin 6B)
(Previous symbol: SNX6B)
  Search for SNX32
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Sorting Nexin 321 2
SNX6B1 2 3
Sorting Nexin 6B1 2
Sorting Nexin-6B2 3
Sorting Nexin-322

External Ids:    HGNC: 264231   Entrez Gene: 2541222   Ensembl: ENSG000001728037   UniProtKB: Q86XE03   

Export aliases for SNX32 gene to outside databases

Previous GC identifers: GC11P065357 GC11P061927


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SNX32 Gene: 
SNX32 (sorting nexin 32) is a protein-coding gene. GO annotations related to this gene include phosphatidylinositol binding. An important paralog of this gene is SNX6.

UniProtKB/Swiss-Prot: SNX32_HUMAN, Q86XE0
Function: May be involved in several stages of intracellular trafficking (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NT_167190.1  NC_018922.2  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SNX32 gene promoter:
         NF-E2 p45   Gfi-1   RORalpha1   N-Myc   GATA-6   POU2F1   POU2F1a   NF-E2   Pax-4a   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSNX32 promoter sequence
   Search SABiosciences Chromatin IP Primers for SNX32

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SNX32


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.1   Ensembl cytogenetic band:  11q13.1   HGNC cytogenetic band: 11q13.1

SNX32 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SNX32 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P065601:  view genomic region     (about GC identifiers)

Start:
65,601,112 bp from pter      End:
65,624,367 bp from pter
Size:
23,256 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: SNX32_HUMAN, Q86XE0 (See protein sequence)
Recommended Name: Sorting nexin-32  
Size: 403 amino acids; 46399 Da
Secondary accessions: Q8IW53 Q96NG4
Alternative splicing: 2 isoforms:  Q86XE0-1   Q86XE0-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for SNX32: NX_Q86XE0

Explore proteomics data for SNX32 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q86XE0

  • SNX32 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SNX32 Protein Expression
    REFSEQ proteins: NP_689973.2  
    ENSEMBL proteins: 
     ENSP00000310620  

    Human Recombinant Protein Products for SNX32: 
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    Novus Biologicals SNX32 Protein
    Novus Biologicals SNX32 Lysates
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    Cloud-Clone Corp. Proteins for SNX32 


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    Cloud-Clone Corp. ELISAs for SNX32 
    Cloud-Clone Corp. CLIAs for SNX32


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    SNX: Sorting nexins

    3 InterPro protein domains:
     IPR015404 Vps5_C
     IPR014637 Snx5_Snx6
     IPR001683 Phox

    Graphical View of Domain Structure for InterPro Entry Q86XE0

    ProtoNet protein and cluster: Q86XE0

    1 Blocks protein domain: IPB001683 Phox-like

    UniProtKB/Swiss-Prot: SNX32_HUMAN, Q86XE0
    Similarity: Belongs to the sorting nexin family
    Similarity: Contains 1 PX (phox homology) domain


    SNX32 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SNX32_HUMAN, Q86XE0
    Function: May be involved in several stages of intracellular trafficking (By similarity)

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
    GO:0035091phosphatidylinositol binding IEA--
         
    SNX32 for ontologies           About GeneDecksing


    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for SNX32 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for SNX32

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for SNX32 
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for SNX32 

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNX32
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate SNX32:
    hsa-miR-146b-3p hsa-miR-548aa
    SwitchGear 3'UTR luciferase reporter plasmidSNX32 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
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    Gene Editing
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNX32


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SNX32

    STRING Interaction Network Preview (showing 4 interactants - click image to see more details)

    4 Interacting proteins for SNX32 (Q86XE03 ENSP000003106204) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SNX1Q135963, ENSP000003696384I2D: score=1 STRING: ENSP00000369638
    SNX2ENSP000003688314STRING: ENSP00000368831
    VPS35ENSP000002991384STRING: ENSP00000299138
    --ENSP000003807954STRING: ENSP00000380795
    About this table

    Gene Ontology (GO): 2 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007154cell communication IEA--
    GO:0015031protein transport IEA--

    SNX32 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SNX32

    Search CenterWatch for drugs/clinical trials and news about SNX32

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SNX32 gene: 
    NM_152760.2  

    Unigene Cluster for SNX32:

    Sorting nexin 32
    Hs.591950  [show with all ESTs]
    Unigene Representative Sequence: AL833261
    9 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000308342(uc001ofr.3) ENST00000533298(uc010rop.1) ENST00000531503(uc009yqt.3)
    ENST00000531795 ENST00000526972 ENST00000534387 ENST00000524729 ENST00000530101
    ENST00000533236
    miRNA
    Products:
         
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNX32
    2 QIAGEN miScript miRNA Assays for microRNAs that regulate SNX32:
    hsa-miR-146b-3p hsa-miR-548aa
    SwitchGear 3'UTR luciferase reporter plasmidSNX32 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene RNAi products in human, mouse, rat for SNX32
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SNX32
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    GenScript: all cDNA clones in your preferred vector: SNX32 (NM_152760)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for SNX32
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat SNX32
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                         Customized lentivirus expression plasmids for stable overexpression of SNX32 
    Primer
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SNX32
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SNX32

    Additional mRNA sequence: 

    AK289587.1 AK293827.1 AK296055.1 AK299512.1 AK309435.1 AK309789.1 AK311588.1 AL833261.1 
    BC040981.2 BC045563.1 

    9 DOTS entries:

    DT.100045768  DT.95361135  DT.102839914  DT.120690027  DT.120690192  DT.100882412  DT.40208580  DT.425826 
    DT.91974206 

    24/124 AceView cDNA sequences (see all 124):

    BE464787 W67154 BE219367 BF933256 BI754340 AL833261 AW451684 BF724391 
    BM921257 BI063904 BX280533 CD638068 AK055496 BX395163 D25714 CD638070 
    AA351390 BF801710 BM922209 BF759385 T08800 BP348242 AA573956 AI688472 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SNX32 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b · 3c · 3d ^ 4 ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
    SP1:                                -                 -     -                       -                                                               
    SP2:                                -                 -     -                       -                                                               
    SP3:                                -                 -     -                                                                                       
    SP4:                                -           -     -     -                                                                                       
    SP5:                          -     -                 -     -                                                                                       


    ECgene alternative splicing isoforms for SNX32

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SNX32 expression in normal human tissues (normalized intensities)      SNX32 embryonic expression: see
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GGCATCATAA
    SNX32 Expression
    About this image


    SNX32 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/4 selected tissues (see all 4) fully expand
     
     Brain (Nervous System)    fully expand to see all 3 entries
             postcentral gyrus   
     
     Pancreas (Endocrine System)
             Posterior foregut-like cells ( A scalable, suspension protocol for derivation of...
     
     Epidermis (Integumentary System)
     
     Dermis (Integumentary System)

    See SNX32 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SNX32

    SOURCE GeneReport for Unigene cluster: Hs.591950
        SABiosciences Custom PCR Arrays for SNX32
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNX32

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals and fungi.

    Orthologs for SNX32 gene from 3/9 species (see all 9)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Snx321 , 5 sorting nexin 321, 5 87.06(n)1
    91.29(a)1
      19 (4.34 cM)5
    2258611  NM_001024560.21  NP_001019731.11 
     54952785 
    worm
    (Caenorhabditis elegans)
    Secernentea snx-61 Protein SNX-6 55.74(n)
    53.22(a)
      190399  NM_075117.7  NP_507518.4 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes VPS56
    Nexin-1 homolog required for localizing membrane p...
    9(a)
    1 → many
    XV(453768-455795)


    ENSEMBL Gene Tree for SNX32 (if available)
    TreeFam Gene Tree for SNX32 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SNX32 gene
    SNX62  SNX22  SNX12  SNX52  
    2 SIMAP similar genes for SNX32 using alignment to 1 protein entry:     SNX32_HUMAN:
    SNX6    SNX5

    SNX32 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/572 SNPs in SNX32 are shown (see all 572)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1809635301,2
    --65599415(+) AAACAA/GATTCA 1 -- us2k10--------
    rs112273201,2
    C,F--65599432(+) ATATCT/CTTCAC 1 -- us2k11Minor allele frequency- C:0.14EA 120
    rs767560501,2
    C,F--65599538(+) CATGAG/ATAAAT 1 -- us2k11Minor allele frequency- A:0.02NA 120
    rs1861528081,2
    --65599636(+) TCCCCA/GCTGGT 1 -- us2k10--------
    rs777791421,2
    C,F--65599656(+) CTCCTC/TACTAG 1 -- us2k13Minor allele frequency- T:0.16WA NA EA 358
    rs759554111,2
    F--65599676(+) TCTCCG/ACACTT 1 -- us2k12Minor allele frequency- A:0.04CSA WA 120
    rs1155007671,2
    F--65599677(+) CTCCGC/TACTTG 1 -- us2k11Minor allele frequency- T:0.03WA 118
    rs71103851,2
    C,H--65599743(+) TCCACT/CGGTTC 1 -- us2k14Minor allele frequency- C:0.00NS EA 404
    rs798793401,2
    C--65599744(+) CCACTA/GGTTCC 1 -- us2k10--------
    rs1474383731,2
    C--65600058(+) TCCAC-/TCAACCTCA
    GCTTCTCTCTGA
    TTGAT
    1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SNX32 (65601112 - 65624367 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 8 variations for SNX32:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2744634CNV Deletion23290073
    esv2744633CNV Deletion23290073
    esv2662850CNV Deletion23128226
    nsv897764CNV Loss21882294
    nsv897763CNV Loss21882294
    nsv897736CNV Loss21882294
    dgv1185n71CNV Loss21882294
    dgv393e1CNV Complex17122850

    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing SNX32
    DNA2.0 Custom Variant and Variant Library Synthesis for SNX32

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SNX32 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with SNX32)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The Phox (PX) domain proteins and membrane traffic. (PubMed id 16782399)1, 3 Seet L.F. and Hong W. (2006)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Large-scale genotyping identifies 41 new loci associat ed with breast cancer risk. (PubMed id 23535729)1 Michailidou K....Easton D.F. (2013)
    4. Host-microbe interactions have shaped the genetic arch itecture of inflammatory bowel disease. (PubMed id 23128233)1 Jostins L....Cho J.H. (2012)
    5. A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
    6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (2007)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
    8. Circular rapid amplification of cDNA ends for high-throughput extension cloning of partial genes. (PubMed id 15203218)1 Fu G.K....Stuve L.L. (2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 254122 HGNC: 26423 AceView: FLJ30934 Ensembl:ENSG00000172803 euGenes: HUgn254122
    ECgene: SNX32 H-InvDB: SNX32

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SNX32 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SNX32 gene:
    Search GeneIP for patents involving SNX32

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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