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Aliases for SNX29P2 Gene

Aliases for SNX29P2 Gene

  • Sorting Nexin 29 Pseudogene 2 2 3 5
  • RUN Domain Containing 2C 2 3
  • RUNDC2C 3 4
  • Sorting Nexin 29 Protein Pseudogene 2 4
  • RUN Domain-Containing Protein 2C 4

External Ids for SNX29P2 Gene

Previous HGNC Symbols for SNX29P2 Gene

  • RUNDC2C

Previous GeneCards Identifiers for SNX29P2 Gene

  • GC16P029304

Summaries for SNX29P2 Gene

GeneCards Summary for SNX29P2 Gene

SNX29P2 (Sorting Nexin 29 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX29P2 Gene

Genomics for SNX29P2 Gene

Regulatory Elements for SNX29P2 Gene

Enhancers for SNX29P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G029299 1.7 FANTOM5 Ensembl ENCODE dbSUPER 6.2 -1.9 -1881 1.5 CTCF ELF3 FOXA2 SAP130 ETV1 BACH1 CEBPG RAD21 RARA ZNF7 SPNS1 ENSG00000260953 SNX29P2 C16orf54 LOC105371159
GH16G029273 1.8 FANTOM5 Ensembl ENCODE dbSUPER 4.7 -28.4 -28387 0.6 HDGF PKNOX1 FOXA2 ARNT YBX1 ZNF48 ZBTB7B TCF12 ZNF207 FOS NPIPB13 CDIPT ENSG00000260853 ENSG00000260367 NFATC2IP ENSG00000260953 RPS15AP33 ENSG00000198106 ENSG00000260796 SMG1P2
GH16G029326 1.3 Ensembl ENCODE dbSUPER 4.6 +25.8 25784 3.1 HDGF PKNOX1 ZSCAN4 BMI1 SCRT2 ETV6 FOS RELB CREM IKZF2 LOC101928188 SNX29P2 PIR61520 PIR48621
GH16G029284 1.2 Ensembl ENCODE dbSUPER 4.7 -17.0 -16995 1.4 SOX5 SOX13 GATAD2A RARA GABPB1 ETV4 ZBTB33 KDM1A ZNF24 NR2F6 ENSG00000260953 SNX29P2 ENSG00000198106 ENSG00000277999
GH16G029654 1.3 Ensembl ENCODE 4 +352.8 352770 1.1 HDGF PKNOX1 ATF1 ARNT TCF12 ZNF766 ELK1 GATA2 KLF13 NCOA1 SNX29P2 GC16M029645 CA5AP1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNX29P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNX29P2 Gene

Chromosome:
16
Start:
29,302,287 bp from pter
End:
29,370,272 bp from pter
Size:
67,986 bases
Orientation:
Plus strand

Genomic View for SNX29P2 Gene

Genes around SNX29P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX29P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX29P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNX29P2 Gene

Proteins for SNX29P2 Gene

  • Protein details for SNX29P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IUI4-S29P2_HUMAN
    Recommended name:
    Putative protein SNX29P2
    Protein Accession:
    Q8IUI4

    Protein attributes for SNX29P2 Gene

    Size:
    249 amino acids
    Molecular mass:
    27226 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNX29P2 Gene

Post-translational modifications for SNX29P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX29P2 Gene

Domains & Families for SNX29P2 Gene

Protein Domains for SNX29P2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8IUI4

UniProtKB/Swiss-Prot:

S29P2_HUMAN :
  • Belongs to the sorting nexin family.
Family:
  • Belongs to the sorting nexin family.
genes like me logo Genes that share domains with SNX29P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SNX29P2 Gene

Function for SNX29P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX29P2 Gene

Localization for SNX29P2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNX29P2 gene
Compartment Confidence
nucleus 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNX29P2 Gene

Pathways & Interactions for SNX29P2 Gene

SuperPathways for SNX29P2 Gene

No Data Available

Interacting Proteins for SNX29P2 Gene

Gene Ontology (GO) - Biological Process for SNX29P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNX29P2 Gene

Transcripts for SNX29P2 Gene

Unigene Clusters for SNX29P2 Gene

Sorting nexin 29 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNX29P2 Gene

No ASD Table

Relevant External Links for SNX29P2 Gene

GeneLoc Exon Structure for
SNX29P2
ECgene alternative splicing isoforms for
SNX29P2

Expression for SNX29P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNX29P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNX29P2 Gene

This gene is overexpressed in Liver (x5.7) and Ovary (x5.5).

Protein differential expression in normal tissues from HIPED for SNX29P2 Gene

This gene is overexpressed in Gallbladder (41.9) and Fetal heart (27.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SNX29P2 Gene



Protein tissue co-expression partners for SNX29P2 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNX29P2 Gene:

SNX29P2

SOURCE GeneReport for Unigene cluster for SNX29P2 Gene:

Hs.658149
genes like me logo Genes that share expression patterns with SNX29P2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNX29P2 Gene

Orthologs for SNX29P2 Gene

Evolution for SNX29P2 Gene

ENSEMBL:
Gene Tree for SNX29P2 (if available)
TreeFam:
Gene Tree for SNX29P2 (if available)

No data available for Orthologs for SNX29P2 Gene

Paralogs for SNX29P2 Gene

(2) SIMAP similar genes for SNX29P2 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with SNX29P2: view

No data available for Paralogs for SNX29P2 Gene

Variants for SNX29P2 Gene

Sequence variations from dbSNP and Humsavar for SNX29P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000054012 -- 29,308,006(+) GCCTG(C/T)GAGAG intron-variant
rs1000204522 -- 29,312,851(+) GAAGG(C/T)AAAAA intron-variant
rs1000241030 -- 29,321,229(+) TGAGG(G/T)GCACA intron-variant
rs1000248249 -- 29,336,587(+) AGCTG(C/T)GTAGA intron-variant
rs1000355631 -- 29,353,648(+) ATGCT(C/G)TAGAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNX29P2 Gene

Variant ID Type Subtype PubMed ID
esv2669019 CNV deletion 23128226
esv2758641 CNV gain 17122850
esv3638360 CNV gain 21293372
nsv1779 CNV deletion 18451855
nsv952965 CNV deletion 24416366
nsv977949 CNV duplication 23825009
nsv977950 CNV duplication 23825009
nsv977951 CNV duplication 23825009
nsv984306 CNV duplication 23825009

Relevant External Links for SNX29P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX29P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNX29P2 Gene

Disorders for SNX29P2 Gene

Relevant External Links for SNX29P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNX29P2

No disorders were found for SNX29P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNX29P2 Gene

Publications for SNX29P2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  3. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNX29P2 Gene

Sources for SNX29P2 Gene

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