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Aliases for SNX29P2 Gene

Aliases for SNX29P2 Gene

  • Sorting Nexin 29 Pseudogene 2 2 3
  • RUN Domain Containing 2C 2 3
  • RUNDC2C 3 4
  • Sorting Nexin 29 Protein Pseudogene 2 4
  • RUN Domain-Containing Protein 2C 4

External Ids for SNX29P2 Gene

Previous HGNC Symbols for SNX29P2 Gene

  • RUNDC2C

Summaries for SNX29P2 Gene

GeneCards Summary for SNX29P2 Gene

SNX29P2 (Sorting Nexin 29 Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX29P2 Gene

Genomics for SNX29P2 Gene

Genomic Location for SNX29P2 Gene

Chromosome:
16
Start:
29,291,220 bp from pter
End:
29,372,110 bp from pter
Size:
80,891 bases
Orientation:
Plus strand

Genomic View for SNX29P2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for SNX29P2 Gene

No data available for Regulatory Elements for SNX29P2 Gene

Proteins for SNX29P2 Gene

  • Protein details for SNX29P2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8IUI4-S29P2_HUMAN
    Recommended name:
    Putative protein SNX29P2
    Protein Accession:
    Q8IUI4

    Protein attributes for SNX29P2 Gene

    Size:
    249 amino acids
    Molecular mass:
    27226 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNX29P2 Gene

Proteomics data for SNX29P2 Gene at MOPED

Post-translational modifications for SNX29P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX29P2 Gene

Domains & Families for SNX29P2 Gene

Protein Domains for SNX29P2 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q8IUI4

UniProtKB/Swiss-Prot:

S29P2_HUMAN :
  • Belongs to the sorting nexin family.
Family:
  • Belongs to the sorting nexin family.
genes like me logo Genes that share domains with SNX29P2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for SNX29P2 Gene

Function for SNX29P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX29P2 Gene

Localization for SNX29P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNX29P2 Gene

Pathways & Interactions for SNX29P2 Gene

SuperPathways for SNX29P2 Gene

No Data Available

Interacting Proteins for SNX29P2 Gene

Gene Ontology (GO) - Biological Process for SNX29P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNX29P2 Gene

Drugs & Compounds for SNX29P2 Gene

No Compound Related Data Available

Transcripts for SNX29P2 Gene

mRNA/cDNA for SNX29P2 Gene

Unigene Clusters for SNX29P2 Gene

Sorting nexin 29 pseudogene 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNX29P2 Gene

No ASD Table

Relevant External Links for SNX29P2 Gene

GeneLoc Exon Structure for
SNX29P2
ECgene alternative splicing isoforms for
SNX29P2

Expression for SNX29P2 Gene

mRNA expression in normal human tissues for SNX29P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNX29P2 Gene

This gene is overexpressed in Liver (x5.7) and Ovary (x5.5).

Protein differential expression in normal tissues from HIPED for SNX29P2 Gene

This gene is overexpressed in Gallbladder (41.9) and Fetal heart (27.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for SNX29P2 Gene



SOURCE GeneReport for Unigene cluster for SNX29P2 Gene Hs.658149

genes like me logo Genes that share expression patterns with SNX29P2: view

Protein tissue co-expression partners for SNX29P2 Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for SNX29P2 Gene

Orthologs for SNX29P2 Gene

Evolution for SNX29P2 Gene

ENSEMBL:
Gene Tree for SNX29P2 (if available)
TreeFam:
Gene Tree for SNX29P2 (if available)

No data available for Orthologs for SNX29P2 Gene

Paralogs for SNX29P2 Gene

(2) SIMAP similar genes for SNX29P2 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for SNX29P2 Gene

genes like me logo Genes that share paralogs with SNX29P2: view

No data available for Paralogs for SNX29P2 Gene

Variants for SNX29P2 Gene

Sequence variations from dbSNP and Humsavar for SNX29P2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs192297 -- 29,333,038(-) GGGGC(A/G)GCAGC intron-variant
rs257878 -- 29,321,059(-) TCTCC(A/G)CGAGA nc-transcript-variant
rs257879 -- 29,315,853(-) GCATT(C/T)TTTAG intron-variant
rs257880 -- 29,311,195(-) CCCAC(A/G)AGGGG intron-variant
rs257881 -- 29,308,218(-) AAGAG(A/T)TCAGA intron-variant

Relevant External Links for SNX29P2 Gene

HapMap Linkage Disequilibrium report
SNX29P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNX29P2 Gene

Disorders for SNX29P2 Gene

Relevant External Links for SNX29P2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNX29P2
genes like me logo Genes that share disorders with SNX29P2: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNX29P2 Gene

Publications for SNX29P2 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 67
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 67
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for SNX29P2 Gene

Sources for SNX29P2 Gene

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