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SNX29P1 Gene(Pseudogene)

Sorting Nexin 29 Pseudogene 1

GCID:
GC16P021394
GIFtS:
21
Genes Participants
UDN Logo

Aliases for SNX29P1 Gene

Aliases for SNX29P1 Gene

  • Sorting Nexin 29 Pseudogene 1 2 3 5
  • RUN Domain Containing 2B 2 3
  • Putative RUN Domain-Containing Protein 2B 3
  • Sorting Nexin 29 Protein Pseudogene 1 3
  • RUNDC2-Like Protein 3
  • RUNDC2L 3
  • RUNDC2B 3

External Ids for SNX29P1 Gene

Previous HGNC Symbols for SNX29P1 Gene

  • RUNDC2B

Previous GeneCards Identifiers for SNX29P1 Gene

  • GC16P021358

Summaries for SNX29P1 Gene

GeneCards Summary for SNX29P1 Gene

SNX29P1 (Sorting Nexin 29 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX29P1 Gene

Genomics for SNX29P1 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNX29P1 Gene

Enhancers for SNX29P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G021363 1.4 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.7 14704 1.9 BCOR PKNOX1 ZNF146 BHLHE40 CEBPG ATF3 IKZF1 ZNF580 IKZF2 SPI1 METTL9 CRYM DNAH3 SNX29P1 PIR32531
GH16G021358 1.3 Ensembl ENCODE dbSUPER 0.4 +9.3 9273 1.1 HDGF PKNOX1 BACH1 BMI1 ARID3A RELB IKZF2 MTA2 NR2F1 BHLHE40 SNX29P1 PIR32531
GH16G021359 1.3 Ensembl ENCODE dbSUPER 0.4 +11.0 11009 1.9 HDGF PKNOX1 ZSCAN4 BMI1 ZNF143 ZNF207 RELB IKZF2 CREM GATAD2B SNX29P1 PIR32531
GH16G021356 1.1 FANTOM5 ENCODE dbSUPER 0.4 +7.3 7266 0.8 BHLHE40 IKZF1 NBN GATAD2B DPF2 IKZF2 SPI1 DNAH3 CRYM SNX29P1 PIR32531
GH16G021361 0.8 Ensembl dbSUPER 0.4 +12.6 12638 0.4 ZNF664 FOXA2 NR2F1 ATF2 ZNF644 CRYM SNX29P1 PIR32531
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNX29P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNX29P1 Gene

Chromosome:
16
Start:
21,349,363 bp from pter
End:
21,386,064 bp from pter
Size:
36,702 bases
Orientation:
Plus strand

Genomic View for SNX29P1 Gene

Genes around SNX29P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX29P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX29P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNX29P1 Gene

Proteins for SNX29P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNX29P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX29P1 Gene

Domains & Families for SNX29P1 Gene

Suggested Antigen Peptide Sequences for SNX29P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNX29P1 Gene

Function for SNX29P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for SNX29P1 Gene

GenomeRNAi human phenotypes for SNX29P1:
genes like me logo Genes that share phenotypes with SNX29P1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX29P1 Gene

Localization for SNX29P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNX29P1 Gene

Pathways & Interactions for SNX29P1 Gene

SuperPathways for SNX29P1 Gene

PathCards logo More details on SuperPathways for SNX29P1
No Data Available

Interacting Proteins for SNX29P1 Gene

Gene Ontology (GO) - Biological Process for SNX29P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNX29P1 Gene

Drugs & Compounds for SNX29P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNX29P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNX29P1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNX29P1 Gene

Sorting nexin 29 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNX29P1 Gene

No ASD Table

Relevant External Links for SNX29P1 Gene

GeneLoc Exon Structure for
SNX29P1
ECgene alternative splicing isoforms for
SNX29P1

Expression for SNX29P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNX29P1 Gene

mRNA expression in normal human tissues for SNX29P1 Gene
mRNA expression by GTEx for SNX29P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNX29P1 Gene:

SNX29P1

SOURCE GeneReport for Unigene cluster for SNX29P1 Gene:

Hs.443656
genes like me logo Genes that share expression patterns with SNX29P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNX29P1 Gene

Orthologs for SNX29P1 Gene

Evolution for SNX29P1 Gene

ENSEMBL:
Gene Tree for SNX29P1 (if available)
TreeFam:
Gene Tree for SNX29P1 (if available)

No data available for Orthologs for SNX29P1 Gene

Paralogs for SNX29P1 Gene

No data available for Paralogs for SNX29P1 Gene

Variants for SNX29P1 Gene

Sequence variations from dbSNP and Humsavar for SNX29P1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000036544 -- 21,365,930(+) TATGT(C/G)TCAGA intron-variant
rs1000214464 -- 21,356,620(+) CAGTG(C/T)TATCT intron-variant
rs1000323061 -- 21,351,384(+) CTAAC(A/G/T)ATGGC intron-variant
rs1000331792 -- 21,360,787(+) GTTGG(C/T)ATTGT intron-variant
rs1000360597 -- 21,356,213(+) TGGCA(C/G)AGCCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNX29P1 Gene

Variant ID Type Subtype PubMed ID
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv2758636 CNV gain+loss 17122850
esv34235 CNV gain 17911159
esv3638167 CNV loss 21293372
nsv433437 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv827583 CNV loss 20364138
nsv974781 CNV duplication 23825009
nsv974782 CNV duplication 23825009
nsv984290 CNV duplication 23825009

Relevant External Links for SNX29P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX29P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNX29P1 Gene

Disorders for SNX29P1 Gene

Relevant External Links for SNX29P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNX29P1

No disorders were found for SNX29P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNX29P1 Gene

Publications for SNX29P1 Gene

  1. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V. … Han D.K. (Sci. Signal. 2009) 3 64
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 64
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNX29P1 Gene

Sources for SNX29P1 Gene

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