Free for academic non-profit institutions. Other users need a Commercial license

SNX29P1 Gene(Pseudogene)

Sorting Nexin 29 Pseudogene 1

GCID:
GC16P021394
GIFtS:
17
Genes Participants
UDN Logo

Aliases for SNX29P1 Gene

Aliases for SNX29P1 Gene

  • Sorting Nexin 29 Pseudogene 1 2 3 5
  • RUN Domain Containing 2B 2 3
  • Putative RUN Domain-Containing Protein 2B 3
  • Sorting Nexin 29 Protein Pseudogene 1 3
  • RUNDC2-Like Protein 3
  • RUNDC2L 3
  • RUNDC2B 3

External Ids for SNX29P1 Gene

Previous HGNC Symbols for SNX29P1 Gene

  • RUNDC2B

Previous GeneCards Identifiers for SNX29P1 Gene

  • GC16P021358

Summaries for SNX29P1 Gene

GeneCards Summary for SNX29P1 Gene

SNX29P1 (Sorting Nexin 29 Pseudogene 1) is a Pseudogene.

Additional gene information for SNX29P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX29P1 Gene

Genomics for SNX29P1 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for SNX29P1 Gene

Promoters and enhancers for SNX29P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH16I021359 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 +11.0 11009 1.9 HDGF PKNOX1 SMAD1 ZSCAN4 BMI1 KLF5 IRF4 ZNF207 ZNF143 ATF7 SNX29P1 PIR32531
GH16I021358 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 +9.3 9273 1.1 HDGF PKNOX1 SMAD1 BACH1 BMI1 ATF7 IKZF2 ZNF687 NR2F1 TRIM22 SNX29P1 PIR32531
GH16I021363 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +14.7 14703 1.9 PKNOX1 IKZF1 ELF1 IKZF2 SPI1 METTL9 CRYM DNAH3 SNX29P1 PIR32531
GH16I021356 Enhancer 1 FANTOM5 ENCODE dbSUPER 0.4 +7.3 7265 0.8 SMARCA5 IKZF1 NBN ELF1 DPF2 IKZF2 SPI1 DNAH3 CRYM SNX29P1 PIR32531
GH16I021367 Enhancer 0.7 ENCODE dbSUPER 0.4 +18.7 18689 0.9 SMARCA5 IKZF1 IKZF2 SPI1 SNX29P1 PIR32531
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNX29P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNX29P1 Gene

Genomic Locations for SNX29P1 Gene
chr16:21,349,363-21,386,064
(GRCh38/hg38)
Size:
36,702 bases
Orientation:
Plus strand
chr16:21,358,484-21,403,412
(GRCh37/hg19)

Genomic View for SNX29P1 Gene

Genes around SNX29P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX29P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX29P1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNX29P1 Gene

Proteins for SNX29P1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNX29P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX29P1 Gene

Domains & Families for SNX29P1 Gene

Suggested Antigen Peptide Sequences for SNX29P1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for SNX29P1 Gene

Function for SNX29P1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes for SNX29P1 Gene

GenomeRNAi human phenotypes for SNX29P1:
genes like me logo Genes that share phenotypes with SNX29P1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX29P1 Gene

Localization for SNX29P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNX29P1 Gene

Pathways & Interactions for SNX29P1 Gene

SuperPathways for SNX29P1 Gene

PathCards logo More details on SuperPathways for SNX29P1
No Data Available

Interacting Proteins for SNX29P1 Gene

Gene Ontology (GO) - Biological Process for SNX29P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNX29P1 Gene

Drugs & Compounds for SNX29P1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNX29P1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNX29P1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNX29P1 Gene

Sorting nexin 29 pseudogene 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNX29P1 Gene

No ASD Table

Relevant External Links for SNX29P1 Gene

GeneLoc Exon Structure for
SNX29P1
ECgene alternative splicing isoforms for
SNX29P1

Expression for SNX29P1 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNX29P1 Gene

mRNA expression in normal human tissues for SNX29P1 Gene
mRNA expression by GTEx for SNX29P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNX29P1 Gene:

SNX29P1

SOURCE GeneReport for Unigene cluster for SNX29P1 Gene:

Hs.443656
genes like me logo Genes that share expression patterns with SNX29P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNX29P1 Gene

Orthologs for SNX29P1 Gene

Evolution for SNX29P1 Gene

ENSEMBL:
Gene Tree for SNX29P1 (if available)
TreeFam:
Gene Tree for SNX29P1 (if available)

No data available for Orthologs for SNX29P1 Gene

Paralogs for SNX29P1 Gene

No data available for Paralogs for SNX29P1 Gene

Variants for SNX29P1 Gene

Sequence variations from dbSNP and Humsavar for SNX29P1 Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1000036544 -- 21,365,930(+) G/C intron_variant
rs1000214464 -- 21,356,620(+) C/T intron_variant
rs1000323061 -- 21,351,384(+) G/A/T intron_variant
rs1000331792 -- 21,360,787(+) C/T intron_variant
rs1000360597 -- 21,356,213(+) C/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNX29P1 Gene

Variant ID Type Subtype PubMed ID
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv2758636 CNV gain+loss 17122850
esv34235 CNV gain 17911159
esv3638167 CNV loss 21293372
nsv433437 CNV gain 18776910
nsv436835 CNV insertion 17901297
nsv827583 CNV loss 20364138
nsv974781 CNV duplication 23825009
nsv974782 CNV duplication 23825009
nsv984290 CNV duplication 23825009

Additional Variant Information for SNX29P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX29P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNX29P1 Gene

Disorders for SNX29P1 Gene

Additional Disease Information for SNX29P1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for SNX29P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNX29P1 Gene

Publications for SNX29P1 Gene

  1. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PMID: 19690332) Mayya V … Han DK (Science signaling 2009) 3 58
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 58
  4. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SNX29P1 Gene

Sources for SNX29P1 Gene

Content
Loading form....