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Aliases for SNX18P2 Gene

Subcategory (RNA class) for SNX18P2 Gene

lncRNA

Aliases for SNX18P2 Gene

  • Sorting Nexin 18 Pseudogene 2 2 3 5

External Ids for SNX18P2 Gene

ORGUL Members for SNX18P2 Gene

Previous GeneCards Identifiers for SNX18P2 Gene

  • GC09M095657

Summaries for SNX18P2 Gene

GeneCards Summary for SNX18P2 Gene

SNX18P2 (Sorting Nexin 18 Pseudogene 2) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNX18P2 Gene

Genomics for SNX18P2 Gene

Regulatory Elements for SNX18P2 Gene

Enhancers for SNX18P2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F092745 1.4 Ensembl ENCODE 16.2 +146.5 146505 5.6 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF302 NOL8 PHF2 ZNF484 CENPP MTND4P15 LINC00475 SPTLC1 RPL21P86 SNX18P2 LOC101927993
GH09F092145 1.3 Ensembl ENCODE 16.2 +747.1 747115 3.5 HDGF PKNOX1 ARNT CREB3L1 YBX1 ZNF2 ZNF207 FOS SP3 REST NOL8 MTND4P15 ENSG00000236115 HSPE1P22 RPL21P82 RPL21P86 SNX18P2 LOC101927993 SPTLC1 MTCO3P29
GH09F092323 1.2 ENCODE 16.2 +569.1 569074 3.0 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 CENPP NOL8 ENSG00000236115 HSPE1P22 RPL21P82 RPL21P86 SNX18P2 LOC101927993 SPTLC1 ASPN
GH09F093672 0.5 FANTOM5 16.2 -778.2 -778162 0.3 CTBP1 ZEB2 ZNF645 ZEB1 ENSG00000231990 LOC101927993 MIRLET7DHG SNX18P2 RPL21P86 ENSG00000237385 PHF2 MIR548AU LOC101928014
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNX18P2 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNX18P2 Gene

Chromosome:
9
Start:
92,893,668 bp from pter
End:
92,894,505 bp from pter
Size:
838 bases
Orientation:
Minus strand

Genomic View for SNX18P2 Gene

Genes around SNX18P2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNX18P2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNX18P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNX18P2 Gene

Proteins for SNX18P2 Gene

Post-translational modifications for SNX18P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNX18P2 Gene

Domains & Families for SNX18P2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNX18P2 Gene

Function for SNX18P2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNX18P2 Gene

Localization for SNX18P2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNX18P2 Gene

Pathways & Interactions for SNX18P2 Gene

SuperPathways for SNX18P2 Gene

No Data Available

Interacting Proteins for SNX18P2 Gene

Gene Ontology (GO) - Biological Process for SNX18P2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNX18P2 Gene

Transcripts for SNX18P2 Gene

mRNA/cDNA for SNX18P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNX18P2 Gene

No ASD Table

Relevant External Links for SNX18P2 Gene

GeneLoc Exon Structure for
SNX18P2
ECgene alternative splicing isoforms for
SNX18P2

Expression for SNX18P2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNX18P2 Gene

mRNA differential expression in normal tissues according to GTEx for SNX18P2 Gene

This gene is overexpressed in Testis (x45.4).

NURSA nuclear receptor signaling pathways regulating expression of SNX18P2 Gene:

SNX18P2
genes like me logo Genes that share expression patterns with SNX18P2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNX18P2 Gene

Orthologs for SNX18P2 Gene

Evolution for SNX18P2 Gene

ENSEMBL:
Gene Tree for SNX18P2 (if available)
TreeFam:
Gene Tree for SNX18P2 (if available)

No data available for Orthologs for SNX18P2 Gene

Paralogs for SNX18P2 Gene

No data available for Paralogs for SNX18P2 Gene

Variants for SNX18P2 Gene

Relevant External Links for SNX18P2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNX18P2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNX18P2 Gene

Disorders for SNX18P2 Gene

No disorders were found for SNX18P2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SNX18P2 Gene

Publications for SNX18P2 Gene

No publications were found for SNX18P2 Gene.

Products for SNX18P2 Gene

Sources for SNX18P2 Gene

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